Wall clock time and date at job start Tue Mar 31 2020 22:37:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30819 * 1
3 3 Si 1.86800 * 120.00333 * 2 1
4 4 H 1.48505 * 109.46798 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.47234 * 300.00027 * 3 2 1
6 6 H 1.48497 * 109.46930 * 60.00508 * 3 2 1
7 7 C 1.39952 * 119.99622 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99962 * 170.01408 * 7 2 1
9 9 C 1.41392 * 119.99800 * 349.74529 * 7 2 1
10 10 C 1.40732 * 120.24639 * 329.50204 * 9 7 2
11 11 C 1.37592 * 119.74532 * 180.02562 * 10 9 7
12 12 C 1.38659 * 120.25092 * 0.02842 * 11 10 9
13 13 C 1.38612 * 120.49965 * 359.97218 * 12 11 10
14 14 C 1.37638 * 120.24869 * 359.72281 * 13 12 11
15 15 S 1.76204 * 120.13087 * 180.30350 * 14 13 12
16 16 O 1.42096 * 106.40021 * 230.44139 * 15 14 13
17 17 O 1.42105 * 106.40013 * 3.35733 * 15 14 13
18 18 N 1.65593 * 107.21942 * 116.89856 * 15 14 13
19 19 C 1.46924 * 120.63193 * 96.23420 * 18 15 14
20 20 C 1.53189 * 108.78112 * 126.36407 * 19 18 15
21 21 C 1.53040 * 109.31032 * 54.63361 * 20 19 18
22 22 C 1.53039 * 109.54180 * 298.63789 * 21 20 19
23 23 H 1.09002 * 109.49733 * 301.41158 * 22 21 20
24 24 C 1.52998 * 109.49893 * 181.34611 * 22 21 20
25 25 C 1.53003 * 109.47045 * 65.00347 * 24 22 21
26 26 O 1.42899 * 109.47208 * 179.97438 * 25 24 22
27 27 C 1.46926 * 120.63030 * 275.94815 * 18 15 14
28 28 H 0.97001 * 119.99553 * 359.97438 * 1 2 3
29 29 H 1.07998 * 120.12281 * 359.97438 * 10 9 7
30 30 H 1.07998 * 119.87557 * 180.02562 * 11 10 9
31 31 H 1.08004 * 119.74902 * 180.02562 * 12 11 10
32 32 H 1.08000 * 119.87331 * 179.97438 * 13 12 11
33 33 H 1.08999 * 109.58718 * 246.15738 * 19 18 15
34 34 H 1.09010 * 109.58520 * 6.57912 * 19 18 15
35 35 H 1.08997 * 109.50238 * 174.59060 * 20 19 18
36 36 H 1.09003 * 109.50043 * 294.68881 * 20 19 18
37 37 H 1.09005 * 109.45703 * 58.66102 * 21 20 19
38 38 H 1.09001 * 109.45877 * 178.62816 * 21 20 19
39 39 H 1.08998 * 109.46969 * 184.99725 * 24 22 21
40 40 H 1.08997 * 109.47047 * 305.00137 * 24 22 21
41 41 H 1.08998 * 109.46729 * 299.99525 * 25 24 22
42 42 H 1.08992 * 109.47412 * 59.99520 * 25 24 22
43 43 H 0.96696 * 114.00321 * 179.97438 * 26 25 24
44 44 H 1.08998 * 109.59255 * 353.42086 * 27 18 15
45 45 H 1.09008 * 109.58256 * 113.84769 * 27 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.7023 1.3461 -0.0006
5 1 1.8836 2.3964 -1.2124
6 1 1.8836 2.3963 1.2125
7 6 2.0079 -1.2121 -0.0005
8 1 3.0756 -1.2191 -0.1627
9 6 1.3177 -2.4268 0.2169
10 6 0.1669 -2.4532 1.0266
11 6 -0.4964 -3.6411 1.2317
12 6 -0.0347 -4.8094 0.6446
13 6 1.0977 -4.7952 -0.1547
14 6 1.7735 -3.6173 -0.3788
15 16 3.2080 -3.6014 -1.4019
16 8 4.2193 -2.9286 -0.6644
17 8 3.3594 -4.9232 -1.9012
18 7 2.8672 -2.6438 -2.7091
19 6 3.2713 -1.2314 -2.7282
20 6 4.0812 -0.9672 -4.0013
21 6 3.2650 -1.4039 -5.2201
22 6 2.9779 -2.9045 -5.1329
23 1 3.9188 -3.4528 -5.0856
24 6 2.1908 -3.3465 -6.3682
25 6 3.0596 -3.1728 -7.6156
26 8 2.3247 -3.5862 -8.7693
27 6 2.1605 -3.1921 -3.8747
28 1 -0.4849 0.8401 0.0004
29 1 -0.1936 -1.5446 1.4858
30 1 -1.3799 -3.6637 1.8523
31 1 -0.5618 -5.7372 0.8107
32 1 1.4487 -5.7111 -0.6066
33 1 2.3846 -0.5975 -2.7210
34 1 3.8848 -1.0150 -1.8534
35 1 4.3053 0.0969 -4.0758
36 1 5.0117 -1.5337 -3.9648
37 1 2.3236 -0.8547 -5.2424
38 1 3.8291 -1.1944 -6.1289
39 1 1.9099 -4.3945 -6.2642
40 1 1.2921 -2.7372 -6.4636
41 1 3.3405 -2.1248 -7.7195
42 1 3.9583 -3.7821 -7.5201
43 1 2.8149 -3.5029 -9.5986
44 1 2.0411 -4.2691 -3.7565
45 1 1.1813 -2.7214 -3.9630
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601354000.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:37:18
Heat of formation + Delta-G solvation = -123.502299 kcal
Electronic energy + Delta-G solvation = -29025.531345 eV
Core-core repulsion = 25133.726218 eV
Total energy + Delta-G solvation = -3891.805127 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-38.76869 -37.60862 -36.87363 -36.37641 -34.90271 -33.95984 -33.41550 -31.52431
-30.23512 -29.57087 -28.34024 -25.58416 -24.46923 -23.16363 -21.66696 -21.39776
-21.14913 -19.86618 -18.08594 -17.60386 -17.51857 -17.04715 -16.01900 -15.51997
-15.44436 -15.28087 -14.59618 -14.37227 -14.12567 -13.85626 -13.68478 -13.41878
-13.22320 -13.12647 -13.05512 -12.77726 -12.06802 -11.97806 -11.83796 -11.54614
-11.42489 -11.28933 -11.26896 -11.22222 -11.14876 -11.06862 -10.81324 -10.63547
-10.61249 -10.53675 -10.20501 -10.12890 -9.91006 -9.86311 -9.49639 -9.24465
-8.34854 -8.01818 -7.59409 -7.05871 -4.80274 1.48377 2.32266 2.68739
2.93898 3.01589 3.05066 3.73378 3.80067 4.11111 4.37078 4.71420
4.76349 4.91281 5.03628 5.10404 5.23995 5.27833 5.33507 5.42073
5.55504 5.62739 5.70525 5.75200 5.76890 5.96295 6.02391 6.08521
6.10889 6.16856 6.21888 6.24287 6.29385 6.39124 6.44147 6.64532
6.68190 6.80058 6.95098 7.04224 7.26202 7.32962 7.46293 7.50152
7.67994 7.79122 7.92295 8.32742 8.50075 8.64045 9.87651
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.011019 B = 0.005047 C = 0.004161
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2540.370392 B = 5546.359994 C = 6727.523000
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.780 5.780
2 C 0.082 3.918
3 Si 0.900 3.100
4 H -0.249 1.249
5 H -0.268 1.268
6 H -0.268 1.268
7 C -0.476 4.476
8 H 0.112 0.888
9 C 0.193 3.807
10 C -0.156 4.156
11 C -0.078 4.078
12 C -0.246 4.246
13 C -0.005 4.005
14 C -0.774 4.774
15 S 2.704 3.296
16 O -0.974 6.974
17 O -0.996 6.996
18 N -0.989 5.989
19 C 0.125 3.875
20 C -0.136 4.136
21 C -0.113 4.113
22 C -0.097 4.097
23 H 0.076 0.924
24 C -0.114 4.114
25 C 0.075 3.925
26 O -0.577 6.577
27 C 0.132 3.868
28 H 0.286 0.714
29 H 0.123 0.877
30 H 0.094 0.906
31 H 0.095 0.905
32 H 0.107 0.893
33 H 0.071 0.929
34 H 0.098 0.902
35 H 0.070 0.930
36 H 0.063 0.937
37 H 0.066 0.934
38 H 0.059 0.941
39 H 0.073 0.927
40 H 0.072 0.928
41 H 0.048 0.952
42 H 0.044 0.956
43 H 0.376 0.624
44 H 0.087 0.913
45 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.537 1.114 -10.862 11.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.404 5.404
2 C -0.138 4.138
3 Si 0.723 3.277
4 H -0.172 1.172
5 H -0.193 1.193
6 H -0.193 1.193
7 C -0.504 4.504
8 H 0.130 0.870
9 C 0.189 3.811
10 C -0.176 4.176
11 C -0.096 4.096
12 C -0.267 4.267
13 C -0.025 4.025
14 C -0.869 4.869
15 S 2.804 3.196
16 O -0.965 6.965
17 O -0.987 6.987
18 N -0.825 5.825
19 C -0.001 4.001
20 C -0.175 4.175
21 C -0.151 4.151
22 C -0.117 4.117
23 H 0.094 0.906
24 C -0.153 4.153
25 C -0.003 4.003
26 O -0.382 6.382
27 C 0.006 3.994
28 H 0.097 0.903
29 H 0.141 0.859
30 H 0.112 0.888
31 H 0.113 0.887
32 H 0.125 0.875
33 H 0.090 0.910
34 H 0.116 0.884
35 H 0.089 0.911
36 H 0.082 0.918
37 H 0.084 0.916
38 H 0.078 0.922
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.066 0.934
42 H 0.063 0.937
43 H 0.223 0.777
44 H 0.105 0.895
45 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 3.696 0.737 -10.271 10.940
hybrid contribution -0.258 1.076 -0.103 1.111
sum 3.438 1.813 -10.374 11.078
Atomic orbital electron populations
1.69794 1.07703 1.29870 1.33012 1.25953 0.94760 1.01553 0.91578
0.86341 0.81819 0.80328 0.79184 1.17190 1.19261 1.19320 1.20458
0.97655 0.90337 1.41976 0.87035 1.17018 0.89686 0.89740 0.84696
1.21518 0.98452 0.96661 1.00948 1.20916 0.97591 0.93567 0.97573
1.20513 1.00827 0.97196 1.08137 1.20246 0.93056 0.95107 0.94103
1.29929 1.28430 1.01287 1.27271 1.00955 0.74631 0.71541 0.72482
1.93463 1.57087 1.74986 1.70970 1.93433 1.87130 1.37531 1.80573
1.57487 1.72875 1.21426 1.30671 1.21523 0.99172 0.81285 0.98087
1.21974 0.99045 1.01077 0.95448 1.21602 1.00513 0.95273 0.97664
1.21360 0.99621 0.96876 0.93860 0.90590 1.21497 0.98958 1.02830
0.91980 1.22274 0.94124 0.98167 0.85686 1.86485 1.45119 1.89268
1.17333 1.21167 0.94928 0.99208 0.84109 0.90336 0.85878 0.88814
0.88680 0.87475 0.91036 0.88415 0.91146 0.91813 0.91554 0.92228
0.90863 0.90915 0.93410 0.93737 0.77744 0.89508 0.91508
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -18.10 10.94 55.55 0.61 -17.49 16
2 C 0.08 1.86 5.25 -17.34 -0.09 1.77 16
3 Si 0.90 17.00 29.57 -169.99 -5.03 11.98 16
4 H -0.25 -4.69 7.11 56.52 0.40 -4.29 16
5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16
6 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16
7 C -0.48 -11.52 6.57 -37.74 -0.25 -11.77 16
8 H 0.11 2.70 3.99 -52.48 -0.21 2.49 16
9 C 0.19 4.86 5.53 -106.82 -0.59 4.27 16
10 C -0.16 -3.84 8.65 -38.88 -0.34 -4.18 16
11 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16
12 C -0.25 -5.42 10.05 -39.29 -0.39 -5.81 16
13 C -0.01 -0.12 9.53 -39.66 -0.38 -0.50 16
14 C -0.77 -18.58 5.96 -38.87 -0.23 -18.82 16
15 S 2.70 59.63 5.10 -107.50 -0.55 59.09 16
16 O -0.97 -23.39 14.48 -57.17 -0.83 -24.22 16
17 O -1.00 -22.65 15.74 -57.17 -0.90 -23.55 16
18 N -0.99 -18.39 3.23 -113.76 -0.37 -18.76 16
19 C 0.12 2.15 4.80 -3.71 -0.02 2.14 16
20 C -0.14 -1.84 6.08 -26.61 -0.16 -2.00 16
21 C -0.11 -1.35 4.95 -26.69 -0.13 -1.49 16
22 C -0.10 -1.25 2.32 -90.72 -0.21 -1.46 16
23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
24 C -0.11 -1.33 5.06 -26.73 -0.14 -1.46 16
25 C 0.08 0.75 6.80 37.16 0.25 1.00 16
26 O -0.58 -6.00 13.66 -35.23 -0.48 -6.48 16
27 C 0.13 2.11 5.71 -3.93 -0.02 2.08 16
28 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16
29 H 0.12 3.05 6.34 -52.49 -0.33 2.72 16
30 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16
31 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16
32 H 0.11 2.27 7.33 -52.49 -0.38 1.89 16
33 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16
34 H 0.10 1.83 5.41 -51.92 -0.28 1.55 16
35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.06 0.59 6.50 -51.93 -0.34 0.26 16
39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
41 H 0.05 0.42 6.54 -51.93 -0.34 0.08 16
42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.38 2.10 9.12 45.56 0.42 2.51 16
44 H 0.09 1.41 7.07 -51.93 -0.37 1.04 16
45 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16
LS Contribution 361.23 15.07 5.44 5.44
Total: -1.00 -29.77 361.23 -10.81 -40.59
By element:
Atomic # 1 Polarization: 17.37 SS G_CDS: -5.62 Total: 11.75 kcal
Atomic # 6 Polarization: -35.27 SS G_CDS: -3.10 Total: -38.36 kcal
Atomic # 7 Polarization: -36.48 SS G_CDS: 0.24 Total: -36.24 kcal
Atomic # 8 Polarization: -52.03 SS G_CDS: -2.21 Total: -54.24 kcal
Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.98 kcal
Atomic # 16 Polarization: 59.63 SS G_CDS: -0.55 Total: 59.09 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -29.77 -10.81 -40.59 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601354000.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -82.917 kcal
(2) G-P(sol) polarization free energy of solvation -29.773 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.502 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds