Wall clock time and date at job start Tue Mar 31 2020 22:37:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30819 * 1
3 3 Si 1.86800 * 120.00333 * 2 1
4 4 H 1.48505 * 109.46798 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.47234 * 300.00027 * 3 2 1
6 6 H 1.48497 * 109.46930 * 60.00508 * 3 2 1
7 7 C 1.39952 * 119.99622 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99962 * 170.01408 * 7 2 1
9 9 C 1.41392 * 119.99800 * 349.74529 * 7 2 1
10 10 C 1.40732 * 120.24639 * 329.50204 * 9 7 2
11 11 C 1.37592 * 119.74532 * 180.02562 * 10 9 7
12 12 C 1.38659 * 120.25092 * 0.02842 * 11 10 9
13 13 C 1.38612 * 120.49965 * 359.97218 * 12 11 10
14 14 C 1.37638 * 120.24869 * 359.72281 * 13 12 11
15 15 S 1.76204 * 120.13087 * 180.30350 * 14 13 12
16 16 O 1.42096 * 106.40021 * 230.44139 * 15 14 13
17 17 O 1.42105 * 106.40013 * 3.35733 * 15 14 13
18 18 N 1.65593 * 107.21942 * 116.89856 * 15 14 13
19 19 C 1.46924 * 120.63193 * 96.23420 * 18 15 14
20 20 C 1.53189 * 108.78112 * 126.36407 * 19 18 15
21 21 C 1.53040 * 109.31032 * 54.63361 * 20 19 18
22 22 C 1.53039 * 109.54180 * 298.63789 * 21 20 19
23 23 H 1.09002 * 109.49733 * 301.41158 * 22 21 20
24 24 C 1.52998 * 109.49893 * 181.34611 * 22 21 20
25 25 C 1.53003 * 109.47045 * 65.00347 * 24 22 21
26 26 O 1.42899 * 109.47208 * 179.97438 * 25 24 22
27 27 C 1.46926 * 120.63030 * 275.94815 * 18 15 14
28 28 H 0.97001 * 119.99553 * 359.97438 * 1 2 3
29 29 H 1.07998 * 120.12281 * 359.97438 * 10 9 7
30 30 H 1.07998 * 119.87557 * 180.02562 * 11 10 9
31 31 H 1.08004 * 119.74902 * 180.02562 * 12 11 10
32 32 H 1.08000 * 119.87331 * 179.97438 * 13 12 11
33 33 H 1.08999 * 109.58718 * 246.15738 * 19 18 15
34 34 H 1.09010 * 109.58520 * 6.57912 * 19 18 15
35 35 H 1.08997 * 109.50238 * 174.59060 * 20 19 18
36 36 H 1.09003 * 109.50043 * 294.68881 * 20 19 18
37 37 H 1.09005 * 109.45703 * 58.66102 * 21 20 19
38 38 H 1.09001 * 109.45877 * 178.62816 * 21 20 19
39 39 H 1.08998 * 109.46969 * 184.99725 * 24 22 21
40 40 H 1.08997 * 109.47047 * 305.00137 * 24 22 21
41 41 H 1.08998 * 109.46729 * 299.99525 * 25 24 22
42 42 H 1.08992 * 109.47412 * 59.99520 * 25 24 22
43 43 H 0.96696 * 114.00321 * 179.97438 * 26 25 24
44 44 H 1.08998 * 109.59255 * 353.42086 * 27 18 15
45 45 H 1.09008 * 109.58256 * 113.84769 * 27 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.7023 1.3461 -0.0006
5 1 1.8836 2.3964 -1.2124
6 1 1.8836 2.3963 1.2125
7 6 2.0079 -1.2121 -0.0005
8 1 3.0756 -1.2191 -0.1627
9 6 1.3177 -2.4268 0.2169
10 6 0.1669 -2.4532 1.0266
11 6 -0.4964 -3.6411 1.2317
12 6 -0.0347 -4.8094 0.6446
13 6 1.0977 -4.7952 -0.1547
14 6 1.7735 -3.6173 -0.3788
15 16 3.2080 -3.6014 -1.4019
16 8 4.2193 -2.9286 -0.6644
17 8 3.3594 -4.9232 -1.9012
18 7 2.8672 -2.6438 -2.7091
19 6 3.2713 -1.2314 -2.7282
20 6 4.0812 -0.9672 -4.0013
21 6 3.2650 -1.4039 -5.2201
22 6 2.9779 -2.9045 -5.1329
23 1 3.9188 -3.4528 -5.0856
24 6 2.1908 -3.3465 -6.3682
25 6 3.0596 -3.1728 -7.6156
26 8 2.3247 -3.5862 -8.7693
27 6 2.1605 -3.1921 -3.8747
28 1 -0.4849 0.8401 0.0004
29 1 -0.1936 -1.5446 1.4858
30 1 -1.3799 -3.6637 1.8523
31 1 -0.5618 -5.7372 0.8107
32 1 1.4487 -5.7111 -0.6066
33 1 2.3846 -0.5975 -2.7210
34 1 3.8848 -1.0150 -1.8534
35 1 4.3053 0.0969 -4.0758
36 1 5.0117 -1.5337 -3.9648
37 1 2.3236 -0.8547 -5.2424
38 1 3.8291 -1.1944 -6.1289
39 1 1.9099 -4.3945 -6.2642
40 1 1.2921 -2.7372 -6.4636
41 1 3.3405 -2.1248 -7.7195
42 1 3.9583 -3.7821 -7.5201
43 1 2.8149 -3.5029 -9.5986
44 1 2.0411 -4.2691 -3.7565
45 1 1.1813 -2.7214 -3.9630
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601354000.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:37:17
Heat of formation + Delta-G solvation = -143.574676 kcal
Electronic energy + Delta-G solvation = -29026.401749 eV
Core-core repulsion = 25133.726218 eV
Total energy + Delta-G solvation = -3892.675531 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-39.89925 -39.38554 -38.18829 -37.70317 -36.72001 -35.68550 -34.58091 -32.70973
-32.01588 -31.37035 -29.37491 -27.35337 -25.67135 -24.24491 -23.42479 -22.94987
-22.49670 -20.95851 -19.75268 -19.32849 -18.75071 -18.22509 -17.72091 -17.13695
-16.89759 -16.30671 -16.05476 -15.73718 -15.54031 -15.11142 -15.05658 -14.85458
-14.71310 -14.46876 -14.40147 -14.21750 -13.73398 -13.50897 -13.10249 -13.01186
-12.94057 -12.90627 -12.89603 -12.79170 -12.55776 -12.41043 -12.24676 -12.13374
-11.93392 -11.65682 -11.61900 -11.34302 -11.22728 -11.18719 -11.01026 -10.73072
-9.90520 -9.69357 -9.41927 -8.77808 -6.62405 -0.21301 0.52114 0.95535
1.38269 1.46767 1.53087 2.16399 2.23329 2.62158 2.97301 3.31127
3.49218 3.65491 3.76678 3.91168 4.06984 4.16273 4.24572 4.29816
4.40208 4.45525 4.47699 4.54126 4.64220 4.66235 4.69350 4.80211
4.87479 4.94917 4.98884 5.05456 5.09302 5.13805 5.19829 5.27605
5.28130 5.32823 5.45477 5.53138 5.55229 5.68547 5.82019 5.89289
5.98323 6.12627 6.50779 6.71098 6.82779 6.96477 8.18586
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.011019 B = 0.005047 C = 0.004161
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2540.370392 B = 5546.359994 C = 6727.523000
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.803 5.803
2 C 0.053 3.947
3 Si 0.955 3.045
4 H -0.251 1.251
5 H -0.248 1.248
6 H -0.264 1.264
7 C -0.493 4.493
8 H 0.105 0.895
9 C 0.166 3.834
10 C -0.184 4.184
11 C -0.078 4.078
12 C -0.250 4.250
13 C -0.020 4.020
14 C -0.797 4.797
15 S 2.717 3.283
16 O -0.999 6.999
17 O -1.007 7.007
18 N -0.985 5.985
19 C 0.119 3.881
20 C -0.132 4.132
21 C -0.109 4.109
22 C -0.089 4.089
23 H 0.076 0.924
24 C -0.112 4.112
25 C 0.077 3.923
26 O -0.598 6.598
27 C 0.124 3.876
28 H 0.295 0.705
29 H 0.114 0.886
30 H 0.122 0.878
31 H 0.127 0.873
32 H 0.120 0.880
33 H 0.064 0.936
34 H 0.078 0.922
35 H 0.094 0.906
36 H 0.066 0.934
37 H 0.066 0.934
38 H 0.091 0.909
39 H 0.063 0.937
40 H 0.069 0.931
41 H 0.065 0.935
42 H 0.053 0.947
43 H 0.397 0.603
44 H 0.078 0.922
45 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.886 2.081 -12.720 13.462
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.427 5.427
2 C -0.166 4.166
3 Si 0.775 3.225
4 H -0.175 1.175
5 H -0.172 1.172
6 H -0.189 1.189
7 C -0.521 4.521
8 H 0.123 0.877
9 C 0.162 3.838
10 C -0.204 4.204
11 C -0.096 4.096
12 C -0.270 4.270
13 C -0.040 4.040
14 C -0.890 4.890
15 S 2.815 3.185
16 O -0.990 6.990
17 O -0.998 6.998
18 N -0.823 5.823
19 C -0.006 4.006
20 C -0.171 4.171
21 C -0.146 4.146
22 C -0.109 4.109
23 H 0.095 0.905
24 C -0.150 4.150
25 C 0.000 4.000
26 O -0.406 6.406
27 C -0.002 4.002
28 H 0.106 0.894
29 H 0.132 0.868
30 H 0.140 0.860
31 H 0.145 0.855
32 H 0.137 0.863
33 H 0.082 0.918
34 H 0.097 0.903
35 H 0.113 0.887
36 H 0.085 0.915
37 H 0.085 0.915
38 H 0.109 0.891
39 H 0.082 0.918
40 H 0.088 0.912
41 H 0.083 0.917
42 H 0.071 0.929
43 H 0.247 0.753
44 H 0.097 0.903
45 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 4.029 1.686 -12.133 12.895
hybrid contribution -0.434 0.708 0.468 0.953
sum 3.595 2.395 -11.665 12.440
Atomic orbital electron populations
1.69818 1.08829 1.31220 1.32832 1.26621 0.95354 1.03940 0.90638
0.85530 0.80357 0.76635 0.79998 1.17454 1.17195 1.18895 1.20534
0.97425 0.91082 1.43051 0.87724 1.17343 0.90447 0.90626 0.85403
1.21578 0.99409 0.97284 1.02110 1.21253 0.98074 0.92987 0.97313
1.20899 1.00559 0.98344 1.07168 1.20567 0.93594 0.95333 0.94471
1.30297 1.29130 1.01498 1.28106 1.00449 0.73935 0.71460 0.72627
1.93418 1.58009 1.75428 1.72126 1.93404 1.87194 1.38443 1.80730
1.57277 1.73090 1.21829 1.30103 1.21636 0.99199 0.80148 0.99652
1.21984 0.98559 1.02766 0.93818 1.21611 1.00757 0.94088 0.98169
1.21281 0.99090 0.97967 0.92609 0.90531 1.21435 0.99071 1.02109
0.92428 1.22227 0.93634 0.99364 0.84764 1.86425 1.46232 1.89443
1.18521 1.21404 0.95491 0.98634 0.84648 0.89403 0.86848 0.85964
0.85507 0.86253 0.91770 0.90329 0.88714 0.91529 0.91535 0.89108
0.91828 0.91228 0.91724 0.92876 0.75349 0.90346 0.91546
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -37.62 10.94 21.83 0.24 -37.38 16
2 C 0.05 2.43 5.25 85.26 0.45 2.88 16
3 Si 0.96 34.40 29.57 68.60 2.03 36.43 16
4 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16
5 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16
6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16
7 C -0.49 -24.52 6.57 23.46 0.15 -24.36 16
8 H 0.11 5.26 3.99 -2.91 -0.01 5.24 16
9 C 0.17 8.62 5.53 -21.29 -0.12 8.50 16
10 C -0.18 -9.27 8.65 22.73 0.20 -9.07 16
11 C -0.08 -3.47 10.02 22.22 0.22 -3.25 16
12 C -0.25 -10.81 10.05 22.46 0.23 -10.58 16
13 C -0.02 -0.92 9.53 22.22 0.21 -0.71 16
14 C -0.80 -39.25 5.96 22.73 0.14 -39.11 16
15 S 2.72 122.72 5.10 -56.49 -0.29 122.43 16
16 O -1.00 -49.45 14.48 -128.00 -1.85 -51.30 16
17 O -1.01 -46.50 15.74 -128.00 -2.02 -48.52 16
18 N -0.99 -36.98 3.23 -513.83 -1.66 -38.64 16
19 C 0.12 4.07 4.80 86.36 0.41 4.49 16
20 C -0.13 -3.28 6.08 30.67 0.19 -3.09 16
21 C -0.11 -2.30 4.95 30.62 0.15 -2.15 16
22 C -0.09 -2.16 2.32 -10.86 -0.03 -2.18 16
23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
24 C -0.11 -2.41 5.06 30.59 0.15 -2.26 16
25 C 0.08 1.32 6.80 71.98 0.49 1.81 16
26 O -0.60 -10.94 13.66 -148.98 -2.03 -12.98 16
27 C 0.12 3.93 5.71 86.22 0.49 4.43 16
28 H 0.29 12.35 8.30 -92.71 -0.77 11.58 16
29 H 0.11 5.80 6.34 -2.91 -0.02 5.78 16
30 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16
31 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16
32 H 0.12 5.08 7.33 -2.91 -0.02 5.06 16
33 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16
34 H 0.08 2.99 5.41 -2.38 -0.01 2.98 16
35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16
36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16
37 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16
38 H 0.09 1.41 6.50 -2.39 -0.02 1.40 16
39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
41 H 0.06 0.88 6.54 -2.39 -0.02 0.87 16
42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16
43 H 0.40 3.34 9.12 -74.06 -0.68 2.67 16
44 H 0.08 2.59 7.07 -2.39 -0.02 2.58 16
45 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16
Total: -1.00 -64.95 361.23 -1.90 -66.86
By element:
Atomic # 1 Polarization: 37.42 SS G_CDS: 0.34 Total: 37.76 kcal
Atomic # 6 Polarization: -78.00 SS G_CDS: 3.34 Total: -74.66 kcal
Atomic # 7 Polarization: -74.60 SS G_CDS: -1.42 Total: -76.02 kcal
Atomic # 8 Polarization: -106.89 SS G_CDS: -5.90 Total: -112.79 kcal
Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal
Atomic # 16 Polarization: 122.72 SS G_CDS: -0.29 Total: 122.43 kcal
Total: -64.95 -1.90 -66.86 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601354000.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.720 kcal
(2) G-P(sol) polarization free energy of solvation -64.955 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.675 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.900 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal
(6) G-S(sol) free energy of system = (1) + (5) -143.575 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds