Wall clock time and date at job start Tue Mar 31 2020 22:39:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30825 * 1
3 3 Si 1.86803 * 119.99833 * 2 1
4 4 H 1.48496 * 109.46989 * 239.99581 * 3 2 1
5 5 H 1.48495 * 109.47177 * 359.97438 * 3 2 1
6 6 H 1.48500 * 109.46974 * 120.00165 * 3 2 1
7 7 C 1.39951 * 120.00227 * 179.97438 * 2 1 3
8 8 H 1.07991 * 120.00105 * 177.09426 * 7 2 1
9 9 C 1.41394 * 119.99569 * 357.09653 * 7 2 1
10 10 C 1.40736 * 120.24714 * 323.06170 * 9 7 2
11 11 C 1.37599 * 119.74601 * 180.28031 * 10 9 7
12 12 C 1.38660 * 120.24856 * 359.70078 * 11 10 9
13 13 C 1.38615 * 120.50110 * 0.02562 * 12 11 10
14 14 C 1.37644 * 120.24569 * 359.97438 * 13 12 11
15 15 S 1.76204 * 120.12639 * 180.02562 * 14 13 12
16 16 O 1.42099 * 106.40001 * 142.15565 * 15 14 13
17 17 O 1.42102 * 106.40130 * 9.23874 * 15 14 13
18 18 N 1.65603 * 107.21837 * 255.69986 * 15 14 13
19 19 C 1.46493 * 120.00066 * 63.60208 * 18 15 14
20 20 H 1.08998 * 109.47410 * 332.37094 * 19 18 15
21 21 C 1.52998 * 109.47045 * 92.37335 * 19 18 15
22 22 O 1.42893 * 109.47510 * 64.99862 * 21 19 18
23 23 C 1.53002 * 109.46951 * 212.37183 * 19 18 15
24 24 C 1.52997 * 109.47185 * 65.00299 * 23 19 18
25 25 C 1.53784 * 113.61080 * 272.49613 * 24 23 19
26 26 C 1.53786 * 87.08000 * 220.01854 * 25 24 23
27 27 C 1.53777 * 113.61467 * 174.99902 * 24 23 19
28 28 H 0.97003 * 119.99970 * 0.02562 * 1 2 3
29 29 H 1.08000 * 120.12912 * 0.02562 * 10 9 7
30 30 H 1.07995 * 119.87559 * 179.72480 * 11 10 9
31 31 H 1.07993 * 119.74958 * 180.02562 * 12 11 10
32 32 H 1.07998 * 119.87922 * 179.97438 * 13 12 11
33 33 H 0.96997 * 119.99360 * 243.60436 * 18 15 14
34 34 H 1.09003 * 109.46862 * 304.99693 * 21 19 18
35 35 H 1.09006 * 109.47119 * 185.00074 * 21 19 18
36 36 H 0.96693 * 114.00480 * 179.97438 * 22 21 19
37 37 H 1.09000 * 109.46851 * 185.00239 * 23 19 18
38 38 H 1.08997 * 109.47332 * 304.99792 * 23 19 18
39 39 H 1.08999 * 112.85361 * 43.80228 * 24 23 19
40 40 H 1.08996 * 113.61407 * 334.56241 * 25 24 23
41 41 H 1.08996 * 113.61141 * 105.47245 * 25 24 23
42 42 H 1.08999 * 113.61426 * 270.88648 * 26 25 24
43 43 H 1.08994 * 113.61359 * 139.98286 * 26 25 24
44 44 H 1.09004 * 113.61687 * 254.52881 * 27 24 23
45 45 H 1.09006 * 113.61565 * 25.34723 * 27 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2422 1.6178 0.0000
4 1 3.0960 1.6964 -1.2124
5 1 1.2772 2.7464 -0.0006
6 1 3.0960 1.6964 1.2125
7 6 2.0080 -1.2120 0.0005
8 1 3.0869 -1.2126 -0.0469
9 6 1.3024 -2.4356 0.0631
10 6 0.1396 -2.5441 0.8486
11 6 -0.5358 -3.7415 0.9066
12 6 -0.0783 -4.8370 0.1900
13 6 1.0625 -4.7400 -0.5913
14 6 1.7540 -3.5521 -0.6642
15 16 3.2035 -3.4322 -1.6590
16 8 3.1774 -2.1412 -2.2521
17 8 3.2719 -4.6336 -2.4148
18 7 4.5042 -3.4499 -0.6341
19 6 4.7740 -4.6329 0.1867
20 1 3.8403 -5.1602 0.3822
21 6 5.7375 -5.5603 -0.5565
22 8 7.0009 -4.9106 -0.7101
23 6 5.4030 -4.2008 1.5128
24 6 4.3922 -3.3758 2.3119
25 6 4.4218 -1.8747 1.9788
26 6 4.2376 -1.6175 3.4838
27 6 4.8834 -2.9933 3.7180
28 1 -0.4850 0.8401 -0.0004
29 1 -0.2188 -1.6920 1.4069
30 1 -1.4257 -3.8283 1.5121
31 1 -0.6149 -5.7727 0.2411
32 1 1.4101 -5.5997 -1.1449
33 1 5.0873 -2.6768 -0.5774
34 1 5.3288 -5.7970 -1.5389
35 1 5.8688 -6.4801 0.0135
36 1 7.6627 -5.4419 -1.1736
37 1 5.6851 -5.0840 2.0859
38 1 6.2891 -3.5976 1.3153
39 1 3.3912 -3.8070 2.3014
40 1 5.3814 -1.5322 1.5917
41 1 3.5778 -1.5452 1.3731
42 1 3.1938 -1.5667 3.7935
43 1 4.8329 -0.7858 3.8606
44 1 4.4121 -3.5668 4.5162
45 1 5.9693 -2.9580 3.8066
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601407372.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:39:22
Heat of formation + Delta-G solvation = -94.408237 kcal
Electronic energy + Delta-G solvation = -29852.964389 eV
Core-core repulsion = 25962.420875 eV
Total energy + Delta-G solvation = -3890.543514 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-38.91551 -37.60031 -37.10638 -36.13924 -34.76869 -34.47349 -33.80110 -30.27453
-29.94033 -29.57261 -27.16211 -25.76701 -24.88618 -22.87934 -21.67637 -21.18085
-20.65535 -19.17161 -18.50517 -17.67797 -17.38791 -16.58813 -16.28337 -15.74321
-15.35470 -14.81687 -14.57431 -14.33380 -14.29264 -14.00332 -13.35993 -13.20838
-13.13350 -13.05240 -12.69299 -12.24907 -12.19429 -11.79512 -11.69027 -11.43351
-11.27110 -11.24897 -11.11559 -11.05489 -10.98320 -10.85981 -10.82800 -10.53607
-10.47851 -10.09777 -9.95166 -9.88678 -9.71860 -9.53634 -9.31837 -9.12677
-8.73236 -8.05040 -7.52067 -6.92774 -4.70640 1.56477 2.31774 2.75290
3.03025 3.05801 3.18277 3.87115 3.96732 4.42887 4.49049 4.75985
4.84095 5.06435 5.11035 5.23741 5.34061 5.39110 5.42790 5.49465
5.61208 5.67602 5.88590 5.92953 5.99844 6.03508 6.11009 6.15549
6.18559 6.21532 6.28743 6.36533 6.44764 6.62965 6.75975 6.80791
6.88791 6.96179 7.07176 7.12819 7.30993 7.46712 7.62243 7.70972
7.75452 7.77791 7.91247 8.29493 8.58414 8.64275 10.01560
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.009613 B = 0.006629 C = 0.005715
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2911.942118 B = 4222.834738 C = 4898.440265
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.790 5.790
2 C 0.084 3.916
3 Si 0.907 3.093
4 H -0.255 1.255
5 H -0.277 1.277
6 H -0.258 1.258
7 C -0.448 4.448
8 H 0.097 0.903
9 C 0.194 3.806
10 C -0.148 4.148
11 C -0.079 4.079
12 C -0.243 4.243
13 C -0.009 4.009
14 C -0.766 4.766
15 S 2.693 3.307
16 O -0.959 6.959
17 O -1.001 7.001
18 N -1.108 6.108
19 C 0.165 3.835
20 H 0.094 0.906
21 C 0.054 3.946
22 O -0.566 6.566
23 C -0.105 4.105
24 C -0.105 4.105
25 C -0.166 4.166
26 C -0.140 4.140
27 C -0.138 4.138
28 H 0.286 0.714
29 H 0.122 0.878
30 H 0.093 0.907
31 H 0.094 0.906
32 H 0.106 0.894
33 H 0.413 0.587
34 H 0.062 0.938
35 H 0.048 0.952
36 H 0.372 0.628
37 H 0.065 0.935
38 H 0.075 0.925
39 H 0.091 0.909
40 H 0.069 0.931
41 H 0.116 0.884
42 H 0.078 0.922
43 H 0.055 0.945
44 H 0.057 0.943
45 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.661 -5.569 5.268 11.566
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.414 5.414
2 C -0.136 4.136
3 Si 0.731 3.269
4 H -0.179 1.179
5 H -0.202 1.202
6 H -0.182 1.182
7 C -0.476 4.476
8 H 0.114 0.886
9 C 0.189 3.811
10 C -0.168 4.168
11 C -0.098 4.098
12 C -0.264 4.264
13 C -0.029 4.029
14 C -0.862 4.862
15 S 2.791 3.209
16 O -0.949 6.949
17 O -0.991 6.991
18 N -0.864 5.864
19 C 0.057 3.943
20 H 0.112 0.888
21 C -0.026 4.026
22 O -0.370 6.370
23 C -0.143 4.143
24 C -0.123 4.123
25 C -0.203 4.203
26 C -0.178 4.178
27 C -0.176 4.176
28 H 0.097 0.903
29 H 0.140 0.860
30 H 0.111 0.889
31 H 0.112 0.888
32 H 0.124 0.876
33 H 0.247 0.753
34 H 0.080 0.920
35 H 0.066 0.934
36 H 0.218 0.782
37 H 0.084 0.916
38 H 0.094 0.906
39 H 0.110 0.890
40 H 0.087 0.913
41 H 0.133 0.867
42 H 0.097 0.903
43 H 0.074 0.926
44 H 0.076 0.924
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 8.101 -5.018 4.631 10.595
hybrid contribution 0.205 0.432 0.390 0.617
sum 8.306 -4.586 5.021 10.735
Atomic orbital electron populations
1.69738 1.07593 1.29981 1.34098 1.25829 0.94857 1.01501 0.91403
0.86320 0.80371 0.79457 0.80777 1.17879 1.20174 1.18227 1.19798
0.95352 0.90035 1.42439 0.88557 1.16982 0.90214 0.89536 0.84385
1.21497 0.98034 0.96066 1.01194 1.20920 0.97487 0.93917 0.97473
1.20508 1.00846 0.98218 1.06808 1.20267 0.93845 0.94668 0.94136
1.30031 1.25352 1.03228 1.27541 1.01326 0.73294 0.72789 0.73517
1.93564 1.86399 1.39755 1.75189 1.93437 1.87417 1.49339 1.68930
1.55659 1.45728 1.24074 1.60932 1.20708 0.97346 0.85774 0.90498
0.88842 1.22908 0.84699 0.94533 1.00426 1.86482 1.22932 1.46505
1.81088 1.21722 0.98613 1.00095 0.93910 1.22475 0.99187 0.96125
0.94524 1.23577 1.04048 0.95560 0.97123 1.22733 1.00683 0.96349
0.97991 1.22953 0.99861 0.97589 0.97168 0.90333 0.86041 0.88886
0.88802 0.87582 0.75331 0.91963 0.93414 0.78244 0.91609 0.90642
0.89050 0.91268 0.86657 0.90340 0.92577 0.92436 0.90906
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -19.37 11.04 55.55 0.61 -18.76 16
2 C 0.08 2.00 5.34 -17.34 -0.09 1.91 16
3 Si 0.91 18.40 29.56 -169.99 -5.03 13.38 16
4 H -0.25 -5.36 7.11 56.52 0.40 -4.95 16
5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16
6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16
7 C -0.45 -10.73 5.29 -37.74 -0.20 -10.93 16
8 H 0.10 2.18 4.81 -52.49 -0.25 1.92 16
9 C 0.19 4.66 5.48 -106.82 -0.59 4.08 16
10 C -0.15 -3.50 8.62 -38.87 -0.34 -3.83 16
11 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16
12 C -0.24 -5.08 10.05 -39.29 -0.39 -5.47 16
13 C -0.01 -0.20 9.53 -39.66 -0.38 -0.58 16
14 C -0.77 -17.42 5.71 -38.87 -0.22 -17.64 16
15 S 2.69 57.51 5.03 -107.50 -0.54 56.97 16
16 O -0.96 -23.67 15.84 -57.17 -0.91 -24.58 16
17 O -1.00 -22.22 15.97 -57.17 -0.91 -23.13 16
18 N -1.11 -18.91 4.49 -4.90 -0.02 -18.93 16
19 C 0.17 2.42 2.55 -67.93 -0.17 2.24 16
20 H 0.09 1.39 7.77 -51.93 -0.40 0.99 16
21 C 0.05 0.70 6.88 37.16 0.26 0.96 16
22 O -0.57 -6.91 12.83 -35.23 -0.45 -7.36 16
23 C -0.10 -1.37 4.38 -26.73 -0.12 -1.49 16
24 C -0.10 -1.52 3.52 -89.81 -0.32 -1.84 16
25 C -0.17 -2.65 6.55 -25.91 -0.17 -2.82 16
26 C -0.14 -2.04 8.08 -25.91 -0.21 -2.25 16
27 C -0.14 -1.79 7.64 -25.92 -0.20 -1.99 16
28 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16
29 H 0.12 2.93 6.59 -52.49 -0.35 2.59 16
30 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16
31 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16
32 H 0.11 2.10 7.37 -52.49 -0.39 1.72 16
33 H 0.41 6.69 8.36 -34.47 -0.29 6.40 16
34 H 0.06 0.90 7.29 -51.93 -0.38 0.52 16
35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
36 H 0.37 2.90 9.12 45.56 0.42 3.32 16
37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
38 H 0.07 1.01 7.43 -51.93 -0.39 0.62 16
39 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16
40 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16
41 H 0.12 2.16 3.52 -51.93 -0.18 1.97 16
42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
45 H 0.07 0.87 8.10 -51.93 -0.42 0.44 16
LS Contribution 367.24 15.07 5.53 5.53
Total: -1.00 -29.69 367.24 -10.80 -40.49
By element:
Atomic # 1 Polarization: 23.71 SS G_CDS: -5.56 Total: 18.15 kcal
Atomic # 6 Polarization: -38.23 SS G_CDS: -3.53 Total: -41.76 kcal
Atomic # 7 Polarization: -38.28 SS G_CDS: 0.59 Total: -37.69 kcal
Atomic # 8 Polarization: -52.80 SS G_CDS: -2.27 Total: -55.07 kcal
Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.38 kcal
Atomic # 16 Polarization: 57.51 SS G_CDS: -0.54 Total: 56.97 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -29.69 -10.80 -40.49 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601407372.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.920 kcal
(2) G-P(sol) polarization free energy of solvation -29.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.608 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds