Wall clock time and date at job start Tue Mar 31 2020 22:39:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30825 * 1
3 3 Si 1.86803 * 119.99833 * 2 1
4 4 H 1.48496 * 109.46989 * 239.99581 * 3 2 1
5 5 H 1.48495 * 109.47177 * 359.97438 * 3 2 1
6 6 H 1.48500 * 109.46974 * 120.00165 * 3 2 1
7 7 C 1.39951 * 120.00227 * 179.97438 * 2 1 3
8 8 H 1.07991 * 120.00105 * 177.09426 * 7 2 1
9 9 C 1.41394 * 119.99569 * 357.09653 * 7 2 1
10 10 C 1.40736 * 120.24714 * 323.06170 * 9 7 2
11 11 C 1.37599 * 119.74601 * 180.28031 * 10 9 7
12 12 C 1.38660 * 120.24856 * 359.70078 * 11 10 9
13 13 C 1.38615 * 120.50110 * 0.02562 * 12 11 10
14 14 C 1.37644 * 120.24569 * 359.97438 * 13 12 11
15 15 S 1.76204 * 120.12639 * 180.02562 * 14 13 12
16 16 O 1.42099 * 106.40001 * 142.15565 * 15 14 13
17 17 O 1.42102 * 106.40130 * 9.23874 * 15 14 13
18 18 N 1.65603 * 107.21837 * 255.69986 * 15 14 13
19 19 C 1.46493 * 120.00066 * 63.60208 * 18 15 14
20 20 H 1.08998 * 109.47410 * 332.37094 * 19 18 15
21 21 C 1.52998 * 109.47045 * 92.37335 * 19 18 15
22 22 O 1.42893 * 109.47510 * 64.99862 * 21 19 18
23 23 C 1.53002 * 109.46951 * 212.37183 * 19 18 15
24 24 C 1.52997 * 109.47185 * 65.00299 * 23 19 18
25 25 C 1.53784 * 113.61080 * 272.49613 * 24 23 19
26 26 C 1.53786 * 87.08000 * 220.01854 * 25 24 23
27 27 C 1.53777 * 113.61467 * 174.99902 * 24 23 19
28 28 H 0.97003 * 119.99970 * 0.02562 * 1 2 3
29 29 H 1.08000 * 120.12912 * 0.02562 * 10 9 7
30 30 H 1.07995 * 119.87559 * 179.72480 * 11 10 9
31 31 H 1.07993 * 119.74958 * 180.02562 * 12 11 10
32 32 H 1.07998 * 119.87922 * 179.97438 * 13 12 11
33 33 H 0.96997 * 119.99360 * 243.60436 * 18 15 14
34 34 H 1.09003 * 109.46862 * 304.99693 * 21 19 18
35 35 H 1.09006 * 109.47119 * 185.00074 * 21 19 18
36 36 H 0.96693 * 114.00480 * 179.97438 * 22 21 19
37 37 H 1.09000 * 109.46851 * 185.00239 * 23 19 18
38 38 H 1.08997 * 109.47332 * 304.99792 * 23 19 18
39 39 H 1.08999 * 112.85361 * 43.80228 * 24 23 19
40 40 H 1.08996 * 113.61407 * 334.56241 * 25 24 23
41 41 H 1.08996 * 113.61141 * 105.47245 * 25 24 23
42 42 H 1.08999 * 113.61426 * 270.88648 * 26 25 24
43 43 H 1.08994 * 113.61359 * 139.98286 * 26 25 24
44 44 H 1.09004 * 113.61687 * 254.52881 * 27 24 23
45 45 H 1.09006 * 113.61565 * 25.34723 * 27 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2422 1.6178 0.0000
4 1 3.0960 1.6964 -1.2124
5 1 1.2772 2.7464 -0.0006
6 1 3.0960 1.6964 1.2125
7 6 2.0080 -1.2120 0.0005
8 1 3.0869 -1.2126 -0.0469
9 6 1.3024 -2.4356 0.0631
10 6 0.1396 -2.5441 0.8486
11 6 -0.5358 -3.7415 0.9066
12 6 -0.0783 -4.8370 0.1900
13 6 1.0625 -4.7400 -0.5913
14 6 1.7540 -3.5521 -0.6642
15 16 3.2035 -3.4322 -1.6590
16 8 3.1774 -2.1412 -2.2521
17 8 3.2719 -4.6336 -2.4148
18 7 4.5042 -3.4499 -0.6341
19 6 4.7740 -4.6329 0.1867
20 1 3.8403 -5.1602 0.3822
21 6 5.7375 -5.5603 -0.5565
22 8 7.0009 -4.9106 -0.7101
23 6 5.4030 -4.2008 1.5128
24 6 4.3922 -3.3758 2.3119
25 6 4.4218 -1.8747 1.9788
26 6 4.2376 -1.6175 3.4838
27 6 4.8834 -2.9933 3.7180
28 1 -0.4850 0.8401 -0.0004
29 1 -0.2188 -1.6920 1.4069
30 1 -1.4257 -3.8283 1.5121
31 1 -0.6149 -5.7727 0.2411
32 1 1.4101 -5.5997 -1.1449
33 1 5.0873 -2.6768 -0.5774
34 1 5.3288 -5.7970 -1.5389
35 1 5.8688 -6.4801 0.0135
36 1 7.6627 -5.4419 -1.1736
37 1 5.6851 -5.0840 2.0859
38 1 6.2891 -3.5976 1.3153
39 1 3.3912 -3.8070 2.3014
40 1 5.3814 -1.5322 1.5917
41 1 3.5778 -1.5452 1.3731
42 1 3.1938 -1.5667 3.7935
43 1 4.8329 -0.7858 3.8606
44 1 4.4121 -3.5668 4.5162
45 1 5.9693 -2.9580 3.8066
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601407372.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:39:21
Heat of formation + Delta-G solvation = -114.878238 kcal
Electronic energy + Delta-G solvation = -29853.852035 eV
Core-core repulsion = 25962.420875 eV
Total energy + Delta-G solvation = -3891.431160 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.07829 -39.30800 -38.26838 -37.80603 -36.57623 -35.63406 -35.55093 -31.99940
-31.39160 -31.13850 -28.23968 -27.43554 -26.12634 -23.99621 -23.39945 -22.90813
-21.85115 -20.49761 -19.94734 -19.39060 -18.69444 -17.95562 -17.78281 -17.29059
-16.93345 -16.22407 -16.03864 -15.78945 -15.53957 -15.21587 -14.98545 -14.85958
-14.42817 -14.41446 -14.17195 -13.76385 -13.45457 -13.21839 -13.03090 -12.95787
-12.90646 -12.85019 -12.79235 -12.73353 -12.52906 -12.43777 -12.15816 -11.94269
-11.84531 -11.61156 -11.33895 -11.22213 -11.06143 -10.92469 -10.64477 -10.51947
-10.08553 -9.79105 -9.28336 -8.69162 -6.50500 -0.10458 0.55987 1.01681
1.36554 1.45280 1.53093 2.19606 2.42668 2.73400 3.05382 3.50904
3.52714 3.71912 3.86744 3.96492 3.98947 4.20732 4.27366 4.31768
4.36045 4.50249 4.53780 4.56699 4.72712 4.76816 4.84774 4.95737
4.99938 5.02198 5.05185 5.11664 5.17433 5.18430 5.31765 5.34446
5.47957 5.57586 5.64330 5.67202 5.74601 5.86579 5.91290 6.03395
6.16132 6.32059 6.53992 6.79668 6.88320 7.02992 8.27733
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.009613 B = 0.006629 C = 0.005715
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2911.942118 B = 4222.834738 C = 4898.440265
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.823 5.823
2 C 0.043 3.957
3 Si 0.956 3.044
4 H -0.268 1.268
5 H -0.267 1.267
6 H -0.241 1.241
7 C -0.464 4.464
8 H 0.103 0.897
9 C 0.175 3.825
10 C -0.174 4.174
11 C -0.078 4.078
12 C -0.241 4.241
13 C -0.019 4.019
14 C -0.778 4.778
15 S 2.711 3.289
16 O -0.998 6.998
17 O -1.011 7.011
18 N -1.095 6.095
19 C 0.153 3.847
20 H 0.089 0.911
21 C 0.059 3.941
22 O -0.577 6.577
23 C -0.093 4.093
24 C -0.104 4.104
25 C -0.178 4.178
26 C -0.144 4.144
27 C -0.122 4.122
28 H 0.289 0.711
29 H 0.107 0.893
30 H 0.119 0.881
31 H 0.127 0.873
32 H 0.123 0.877
33 H 0.418 0.582
34 H 0.043 0.957
35 H 0.080 0.920
36 H 0.392 0.608
37 H 0.091 0.909
38 H 0.078 0.922
39 H 0.068 0.932
40 H 0.078 0.922
41 H 0.086 0.914
42 H 0.061 0.939
43 H 0.066 0.934
44 H 0.066 0.934
45 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.323 -7.060 6.393 14.045
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.449 5.449
2 C -0.173 4.173
3 Si 0.777 3.223
4 H -0.192 1.192
5 H -0.192 1.192
6 H -0.165 1.165
7 C -0.492 4.492
8 H 0.120 0.880
9 C 0.171 3.829
10 C -0.194 4.194
11 C -0.097 4.097
12 C -0.261 4.261
13 C -0.039 4.039
14 C -0.872 4.872
15 S 2.807 3.193
16 O -0.988 6.988
17 O -1.001 7.001
18 N -0.855 5.855
19 C 0.046 3.954
20 H 0.107 0.893
21 C -0.021 4.021
22 O -0.385 6.385
23 C -0.132 4.132
24 C -0.122 4.122
25 C -0.215 4.215
26 C -0.181 4.181
27 C -0.159 4.159
28 H 0.100 0.900
29 H 0.125 0.875
30 H 0.137 0.863
31 H 0.145 0.855
32 H 0.141 0.859
33 H 0.253 0.747
34 H 0.062 0.938
35 H 0.098 0.902
36 H 0.241 0.759
37 H 0.110 0.890
38 H 0.097 0.903
39 H 0.087 0.913
40 H 0.097 0.903
41 H 0.104 0.896
42 H 0.080 0.920
43 H 0.085 0.915
44 H 0.084 0.916
45 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 9.762 -6.526 5.764 13.081
hybrid contribution -0.302 0.750 0.032 0.809
sum 9.460 -5.776 5.797 12.508
Atomic orbital electron populations
1.69797 1.08598 1.30722 1.35754 1.26557 0.95523 1.04112 0.91105
0.85604 0.79473 0.76564 0.80669 1.19231 1.19176 1.16460 1.20021
0.95819 0.90429 1.42972 0.87985 1.17207 0.90717 0.90170 0.84855
1.21508 0.99007 0.96704 1.02169 1.21243 0.97890 0.93260 0.97274
1.20897 1.00436 0.99221 1.05577 1.20581 0.94083 0.94808 0.94393
1.30250 1.26370 1.03358 1.27181 1.00646 0.73487 0.71685 0.73490
1.93507 1.87120 1.41650 1.76540 1.93416 1.87691 1.49385 1.69589
1.55278 1.44108 1.25334 1.60775 1.21031 0.98063 0.85031 0.91268
0.89330 1.22770 0.84627 0.95042 0.99638 1.86427 1.23007 1.47478
1.81549 1.21656 0.97825 1.00848 0.92861 1.22386 0.98636 0.95197
0.96001 1.23591 1.03279 0.97028 0.97559 1.22726 1.00199 0.98109
0.97109 1.22879 1.00844 0.95948 0.96207 0.90008 0.87496 0.86299
0.85535 0.85900 0.74708 0.93833 0.90188 0.75895 0.89033 0.90332
0.91342 0.90302 0.89553 0.91985 0.91501 0.91556 0.88960
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -41.86 11.04 21.83 0.24 -41.62 16
2 C 0.04 2.11 5.34 85.26 0.46 2.57 16
3 Si 0.96 38.46 29.56 68.60 2.03 40.49 16
4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16
5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16
6 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16
7 C -0.46 -22.96 5.29 23.46 0.12 -22.83 16
8 H 0.10 4.78 4.81 -2.92 -0.01 4.76 16
9 C 0.17 8.66 5.48 -21.29 -0.12 8.54 16
10 C -0.17 -8.42 8.62 22.73 0.20 -8.23 16
11 C -0.08 -3.31 10.02 22.22 0.22 -3.08 16
12 C -0.24 -9.66 10.05 22.46 0.23 -9.44 16
13 C -0.02 -0.80 9.53 22.22 0.21 -0.59 16
14 C -0.78 -35.67 5.71 22.73 0.13 -35.54 16
15 S 2.71 116.62 5.03 -56.49 -0.28 116.33 16
16 O -1.00 -50.50 15.84 -128.00 -2.03 -52.52 16
17 O -1.01 -44.54 15.97 -128.00 -2.04 -46.58 16
18 N -1.10 -36.86 4.49 -169.40 -0.76 -37.62 16
19 C 0.15 4.23 2.55 44.99 0.11 4.34 16
20 H 0.09 2.53 7.77 -2.39 -0.02 2.51 16
21 C 0.06 1.37 6.88 71.98 0.50 1.87 16
22 O -0.58 -12.44 12.83 -148.98 -1.91 -14.35 16
23 C -0.09 -2.20 4.38 30.59 0.13 -2.07 16
24 C -0.10 -2.87 3.52 -10.27 -0.04 -2.91 16
25 C -0.18 -5.58 6.55 31.12 0.20 -5.38 16
26 C -0.14 -4.08 8.08 31.12 0.25 -3.82 16
27 C -0.12 -2.86 7.64 31.12 0.24 -2.62 16
28 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16
29 H 0.11 5.40 6.59 -2.91 -0.02 5.39 16
30 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16
31 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16
32 H 0.12 4.70 7.37 -2.91 -0.02 4.68 16
33 H 0.42 13.39 8.36 -96.75 -0.81 12.58 16
34 H 0.04 1.18 7.29 -2.39 -0.02 1.17 16
35 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16
36 H 0.39 4.92 9.12 -74.06 -0.68 4.24 16
37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
38 H 0.08 1.86 7.43 -2.39 -0.02 1.84 16
39 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16
40 H 0.08 2.26 7.90 -2.39 -0.02 2.25 16
41 H 0.09 3.30 3.52 -2.39 -0.01 3.29 16
42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
43 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
45 H 0.09 1.85 8.10 -2.38 -0.02 1.83 16
Total: -1.00 -64.89 367.24 -2.36 -67.25
By element:
Atomic # 1 Polarization: 48.28 SS G_CDS: -0.45 Total: 47.83 kcal
Atomic # 6 Polarization: -82.04 SS G_CDS: 2.85 Total: -79.19 kcal
Atomic # 7 Polarization: -78.73 SS G_CDS: -0.52 Total: -79.25 kcal
Atomic # 8 Polarization: -107.48 SS G_CDS: -5.98 Total: -113.46 kcal
Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal
Atomic # 16 Polarization: 116.62 SS G_CDS: -0.28 Total: 116.33 kcal
Total: -64.89 -2.36 -67.25 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601407372.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.626 kcal
(2) G-P(sol) polarization free energy of solvation -64.892 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.518 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.360 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.878 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds