Wall clock time and date at job start Tue Mar 31 2020 22:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48502 * 109.47257 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47289 * 299.99299 * 3 2 1 6 6 H 1.48504 * 109.47571 * 59.99659 * 3 2 1 7 7 C 1.39944 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99685 * 168.82354 * 7 2 1 9 9 C 1.41394 * 119.99859 * 348.82309 * 7 2 1 10 10 C 1.40733 * 120.24697 * 331.55760 * 9 7 2 11 11 C 1.37598 * 119.74266 * 180.32038 * 10 9 7 12 12 C 1.38658 * 120.25326 * 359.66326 * 11 10 9 13 13 C 1.38613 * 120.49903 * 0.02562 * 12 11 10 14 14 C 1.37648 * 120.24747 * 0.02562 * 13 12 11 15 15 S 1.76198 * 120.12614 * 179.97438 * 14 13 12 16 16 O 1.42110 * 106.40075 * 132.26341 * 15 14 13 17 17 O 1.42101 * 106.40529 * 359.34549 * 15 14 13 18 18 N 1.65599 * 107.21853 * 245.80406 * 15 14 13 19 19 C 1.46492 * 120.00171 * 62.81690 * 18 15 14 20 20 C 1.53002 * 109.47430 * 165.96566 * 19 18 15 21 21 C 1.53000 * 109.47132 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.46942 * 180.02562 * 21 20 19 23 23 H 1.09001 * 110.75184 * 302.98602 * 22 21 20 24 24 C 1.55298 * 110.85029 * 179.28696 * 22 21 20 25 25 C 1.54943 * 100.94462 * 207.67658 * 24 22 21 26 26 O 1.43641 * 105.13538 * 36.44450 * 25 24 22 27 27 C 1.43234 * 109.97160 * 335.57205 * 26 25 24 28 28 H 0.97002 * 120.00065 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12709 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.87549 * 179.68204 * 11 10 9 31 31 H 1.07998 * 119.75273 * 180.02562 * 12 11 10 32 32 H 1.07993 * 119.88044 * 179.97438 * 13 12 11 33 33 H 0.97009 * 119.99605 * 242.82320 * 18 15 14 34 34 H 1.09006 * 109.47151 * 45.97247 * 19 18 15 35 35 H 1.08996 * 109.47340 * 285.97266 * 19 18 15 36 36 H 1.09006 * 109.46398 * 60.00220 * 20 19 18 37 37 H 1.08996 * 109.47431 * 300.00644 * 20 19 18 38 38 H 1.08997 * 109.47292 * 60.00538 * 21 20 19 39 39 H 1.09001 * 109.47358 * 299.99812 * 21 20 19 40 40 H 1.08996 * 111.12668 * 89.75327 * 24 22 21 41 41 H 1.09005 * 111.12747 * 325.59645 * 24 22 21 42 42 H 1.09002 * 110.30889 * 277.53023 * 25 24 22 43 43 H 1.09000 * 110.31095 * 155.35756 * 25 24 22 44 44 H 1.09000 * 109.83301 * 121.22745 * 27 26 25 45 45 H 1.09010 * 109.82953 * 242.10794 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8834 2.3966 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0726 -1.2209 -0.1807 9 6 1.3211 -2.4247 0.2384 10 6 0.1569 -2.4368 1.0291 11 6 -0.4996 -3.6239 1.2594 12 6 -0.0223 -4.8041 0.7101 13 6 1.1197 -4.8031 -0.0755 14 6 1.7932 -3.6275 -0.3184 15 16 3.2449 -3.6300 -1.3169 16 8 3.0910 -2.5706 -2.2514 17 8 3.4649 -4.9801 -1.7019 18 7 4.5135 -3.2102 -0.3387 19 6 4.8810 -4.0660 0.7920 20 6 6.2626 -3.6612 1.3101 21 6 6.6467 -4.5554 2.4907 22 6 8.0279 -4.1502 3.0092 23 1 8.7709 -4.2064 2.2136 24 6 8.4425 -5.0275 4.2216 25 6 9.3844 -4.0575 4.9783 26 8 8.7987 -2.7570 4.8082 27 6 7.9899 -2.7355 3.6262 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2170 -1.5185 1.4574 30 1 -1.3903 -3.6364 1.8701 31 1 -0.5442 -5.7312 0.8957 32 1 1.4829 -5.7283 -0.4980 33 1 5.0131 -2.3974 -0.5145 34 1 4.9053 -5.1063 0.4675 35 1 4.1461 -3.9509 1.5887 36 1 6.2383 -2.6208 1.6346 37 1 6.9975 -3.7762 0.5134 38 1 6.6710 -5.5955 2.1658 39 1 5.9119 -4.4407 3.2876 40 1 8.9768 -5.9201 3.8963 41 1 7.5774 -5.2901 4.8307 42 1 10.3830 -4.0827 4.5422 43 1 9.4258 -4.3183 6.0359 44 1 6.9642 -2.4723 3.8847 45 1 8.3902 -2.0105 2.9174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601433902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:04 Heat of formation + Delta-G solvation = -145.082270 kcal Electronic energy + Delta-G solvation = -27585.736726 eV Core-core repulsion = 23692.995821 eV Total energy + Delta-G solvation = -3892.740905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.42280 -39.37748 -38.05153 -37.33702 -36.64945 -35.67467 -34.79052 -32.04752 -31.69227 -31.34245 -29.67472 -27.36045 -26.10809 -23.70096 -23.43671 -22.94146 -22.36109 -21.29376 -20.16036 -19.50442 -18.43500 -17.86286 -17.71563 -17.27959 -17.04703 -16.65831 -16.14742 -15.98464 -15.73689 -15.53697 -15.07129 -14.93777 -14.55604 -14.47711 -13.99611 -13.94063 -13.70372 -13.52597 -13.26249 -12.99659 -12.95531 -12.89457 -12.83932 -12.79757 -12.56868 -12.47631 -12.35077 -12.10940 -12.07979 -11.64743 -11.58502 -11.48917 -11.38430 -11.20210 -11.11029 -10.45552 -10.21213 -9.83544 -9.42632 -8.78985 -6.61317 -0.14389 0.53295 0.97173 1.36744 1.49750 1.51862 2.15485 2.37467 2.63937 2.99737 3.00534 3.47772 3.55191 3.69750 3.88906 3.97030 4.10913 4.23753 4.29636 4.34290 4.35205 4.47780 4.50571 4.53218 4.72262 4.73510 4.77040 4.85449 4.91956 4.95494 4.96399 5.02417 5.04705 5.14879 5.16153 5.26571 5.30960 5.40658 5.48791 5.52502 5.71078 5.83293 6.00909 6.08487 6.09436 6.26100 6.48172 6.68096 6.84010 8.16995 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010186 B = 0.003600 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.271069 B = 7776.924615 C = 8783.718733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.038 3.962 3 Si 0.976 3.024 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.474 4.474 8 H 0.095 0.905 9 C 0.162 3.838 10 C -0.187 4.187 11 C -0.076 4.076 12 C -0.250 4.250 13 C -0.016 4.016 14 C -0.792 4.792 15 S 2.719 3.281 16 O -1.001 7.001 17 O -1.009 7.009 18 N -1.111 6.111 19 C 0.116 3.884 20 C -0.121 4.121 21 C -0.104 4.104 22 C -0.115 4.115 23 H 0.096 0.904 24 C -0.148 4.148 25 C 0.042 3.958 26 O -0.416 6.416 27 C 0.046 3.954 28 H 0.295 0.705 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.420 0.580 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.198 -5.562 8.362 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.180 4.180 3 Si 0.795 3.205 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.502 4.502 8 H 0.112 0.888 9 C 0.157 3.843 10 C -0.207 4.207 11 C -0.095 4.095 12 C -0.270 4.270 13 C -0.036 4.036 14 C -0.885 4.885 15 S 2.816 3.184 16 O -0.991 6.991 17 O -1.000 7.000 18 N -0.872 5.872 19 C -0.010 4.010 20 C -0.160 4.160 21 C -0.142 4.142 22 C -0.134 4.134 23 H 0.114 0.886 24 C -0.186 4.186 25 C -0.033 4.033 26 O -0.336 6.336 27 C -0.030 4.030 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.256 0.744 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.999 -5.612 7.609 16.892 hybrid contribution -0.577 1.093 0.226 1.256 sum 13.422 -4.519 7.835 16.185 Atomic orbital electron populations 1.69826 1.09037 1.31259 1.33261 1.26817 0.95655 1.04852 0.90658 0.85232 0.80228 0.75847 0.79150 1.16901 1.19408 1.17992 1.20184 0.97259 0.91480 1.41309 0.88753 1.17322 0.90939 0.90579 0.85445 1.21596 0.99162 0.97419 1.02524 1.21256 0.97994 0.92957 0.97280 1.20901 1.00646 0.98074 1.07419 1.20588 0.94004 0.95393 0.93610 1.30186 1.27009 1.00819 1.30532 1.00352 0.73302 0.71650 0.73135 1.93490 1.86660 1.57308 1.61642 1.93419 1.86270 1.38015 1.82261 1.55282 1.49172 1.36874 1.45860 1.21383 0.98183 0.93844 0.87549 1.21794 0.94598 1.00854 0.98770 1.21484 0.95294 1.00276 0.97191 1.22713 0.98465 0.93794 0.98402 0.88597 1.23335 1.00152 0.99015 0.96091 1.23559 0.96694 0.81493 1.01593 1.88368 1.66280 1.33574 1.45398 1.23362 0.95219 0.97893 0.86511 0.89445 0.86780 0.86037 0.85465 0.85896 0.74419 0.90661 0.92418 0.90864 0.89985 0.89918 0.91420 0.88019 0.90247 0.91369 0.89046 0.91585 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.47 10.84 21.83 0.24 -40.24 16 2 C 0.04 1.83 5.25 85.26 0.45 2.27 16 3 Si 0.98 36.48 29.57 68.60 2.03 38.51 16 4 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 7 C -0.47 -23.91 7.63 23.46 0.18 -23.73 16 8 H 0.09 4.41 5.83 -2.91 -0.02 4.39 16 9 C 0.16 8.28 5.55 -21.29 -0.12 8.16 16 10 C -0.19 -9.33 8.66 22.73 0.20 -9.13 16 11 C -0.08 -3.33 10.02 22.22 0.22 -3.11 16 12 C -0.25 -10.44 10.05 22.46 0.23 -10.22 16 13 C -0.02 -0.72 9.54 22.22 0.21 -0.51 16 14 C -0.79 -37.60 5.90 22.73 0.13 -37.46 16 15 S 2.72 117.28 4.96 -56.49 -0.28 117.00 16 16 O -1.00 -50.03 16.53 -128.00 -2.12 -52.14 16 17 O -1.01 -44.78 16.53 -128.00 -2.12 -46.90 16 18 N -1.11 -36.64 5.13 -187.50 -0.96 -37.60 16 19 C 0.12 3.14 6.19 86.38 0.53 3.68 16 20 C -0.12 -2.35 5.20 30.59 0.16 -2.19 16 21 C -0.10 -1.66 4.60 30.59 0.14 -1.51 16 22 C -0.12 -1.67 3.03 -9.53 -0.03 -1.70 16 23 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 24 C -0.15 -1.84 6.62 32.05 0.21 -1.63 16 25 C 0.04 0.63 7.78 72.65 0.56 1.19 16 26 O -0.42 -9.17 11.36 -148.98 -1.69 -10.86 16 27 C 0.05 0.87 6.57 72.45 0.48 1.34 16 28 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 29 H 0.11 5.83 6.21 -2.91 -0.02 5.82 16 30 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 31 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.12 4.94 7.32 -2.91 -0.02 4.92 16 33 H 0.42 12.22 8.48 -96.74 -0.82 11.40 16 34 H 0.08 1.99 7.82 -2.38 -0.02 1.97 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.42 7.48 -2.38 -0.02 1.40 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.15 8.07 -2.39 -0.02 1.13 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 1.02 8.04 -2.38 -0.02 1.00 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.32 7.73 -2.39 -0.02 1.30 16 45 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -67.09 375.36 -1.16 -68.25 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.18 Total: 38.51 kcal Atomic # 6 Polarization: -78.10 SS G_CDS: 3.56 Total: -74.54 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -0.73 Total: -77.84 kcal Atomic # 8 Polarization: -103.98 SS G_CDS: -5.92 Total: -109.90 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 16 Polarization: 117.28 SS G_CDS: -0.28 Total: 117.00 kcal Total: -67.09 -1.16 -68.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601433902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.829 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds