Wall clock time and date at job start Tue Mar 31 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00300 * 2 1 4 4 H 1.48501 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47428 * 300.00374 * 3 2 1 6 6 H 1.48500 * 109.46710 * 60.00359 * 3 2 1 7 7 C 1.37881 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47503 * 180.02562 * 9 7 2 11 11 S 1.81392 * 109.47503 * 180.02562 * 10 9 7 12 12 O 1.42096 * 110.54523 * 68.37185 * 11 10 9 13 13 O 1.42106 * 110.53862 * 291.62089 * 11 10 9 14 14 N 1.65602 * 104.45041 * 180.02562 * 11 10 9 15 15 C 1.47499 * 118.76111 * 89.99974 * 14 11 10 16 16 C 1.53574 * 111.03190 * 138.37180 * 15 14 11 17 17 C 1.51530 * 109.57992 * 320.02336 * 16 15 14 18 18 O 1.42155 * 108.76771 * 91.39452 * 17 16 15 19 19 C 1.38011 * 119.43762 * 272.78276 * 18 17 16 20 20 H 1.09003 * 109.46964 * 303.41544 * 19 18 17 21 21 C 1.50706 * 109.46556 * 183.42533 * 19 18 17 22 22 C 1.38238 * 119.99744 * 144.99669 * 21 19 18 23 23 C 1.38234 * 119.99693 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.00240 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00173 * 324.97051 * 21 19 18 27 27 C 1.45124 * 118.75680 * 269.99355 * 14 11 10 28 28 H 0.97002 * 119.99626 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47566 * 59.99355 * 9 7 2 30 30 H 1.09002 * 109.46838 * 299.99636 * 9 7 2 31 31 H 1.09001 * 109.47347 * 59.99085 * 10 9 7 32 32 H 1.09002 * 109.46665 * 299.99606 * 10 9 7 33 33 H 1.09007 * 109.16895 * 17.96795 * 15 14 11 34 34 H 1.09003 * 109.12460 * 258.74704 * 15 14 11 35 35 H 1.08994 * 109.45503 * 199.98279 * 16 15 14 36 36 H 1.09004 * 109.44792 * 80.05046 * 16 15 14 37 37 H 1.09007 * 109.59209 * 331.61222 * 17 16 15 38 38 H 1.08999 * 109.59106 * 211.18086 * 17 16 15 39 39 H 1.07997 * 119.99846 * 359.97438 * 22 21 19 40 40 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 43 43 H 1.07999 * 120.00025 * 0.02562 * 26 21 19 44 44 H 1.09004 * 109.45958 * 149.26749 * 27 14 11 45 45 H 1.09003 * 109.45728 * 29.31345 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 16 1.3381 -5.2331 -0.0036 12 8 0.6654 -5.4188 -1.2414 13 8 0.6628 -5.4206 1.2326 14 7 2.5202 -6.3928 -0.0024 15 6 3.0249 -6.8905 1.2911 16 6 3.2179 -8.4137 1.2582 17 6 2.0716 -9.0546 0.5023 18 8 2.4326 -9.1649 -0.8683 19 6 2.1885 -8.1077 -1.7212 20 1 1.1281 -7.8568 -1.6947 21 6 2.5781 -8.4945 -3.1247 22 6 1.8481 -8.0225 -4.1996 23 6 2.2058 -8.3769 -5.4869 24 6 3.2938 -9.2028 -5.6995 25 6 4.0208 -9.6787 -4.6245 26 6 3.6658 -9.3208 -3.3373 27 6 3.0204 -6.8812 -1.2742 28 1 -0.4850 0.8401 0.0004 29 1 0.6245 -2.5564 -0.8919 30 1 0.6240 -2.5575 0.8881 31 1 2.8712 -3.6048 0.8890 32 1 2.8723 -3.6041 -0.8910 33 1 2.3113 -6.6369 2.0752 34 1 3.9803 -6.4133 1.5091 35 1 3.2409 -8.7988 2.2776 36 1 4.1582 -8.6497 0.7600 37 1 1.1798 -8.4349 0.5965 38 1 1.8746 -10.0464 0.9092 39 1 0.9984 -7.3770 -4.0334 40 1 1.6353 -8.0085 -6.3267 41 1 3.5729 -9.4799 -6.7054 42 1 4.8681 -10.3275 -4.7903 43 1 4.2361 -9.6896 -2.4975 44 1 4.0656 -7.1710 -1.1662 45 1 2.9377 -6.0938 -2.0234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609542279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:20 Heat of formation + Delta-G solvation = -91.145406 kcal Electronic energy + Delta-G solvation = -28114.812848 eV Core-core repulsion = 24224.410821 eV Total energy + Delta-G solvation = -3890.402027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24851 -38.66824 -36.78820 -35.79573 -35.43502 -33.92969 -33.61372 -31.20610 -31.03207 -30.87338 -27.69697 -26.46469 -25.61390 -23.36423 -22.56026 -21.72797 -21.10747 -21.01943 -18.58929 -17.78277 -17.29811 -16.74878 -16.65844 -16.39641 -15.90406 -15.36848 -15.27105 -14.65327 -14.62897 -14.57866 -14.30830 -13.82234 -13.47025 -13.41641 -13.19851 -12.95246 -12.69027 -12.55656 -12.44177 -12.15763 -11.81136 -11.72159 -11.64239 -11.38613 -11.24650 -11.14301 -11.12153 -11.00233 -10.80419 -10.59730 -10.43528 -10.41241 -9.84942 -9.73297 -9.37575 -9.04732 -8.97495 -8.58154 -8.53824 -6.15659 -4.21370 0.66466 1.22797 1.34907 2.89892 3.23223 3.30583 3.34005 3.45288 3.74914 4.20028 4.34758 4.46859 4.54734 4.71289 4.72755 4.83292 4.90912 4.95243 5.04624 5.08169 5.10682 5.19603 5.29963 5.35084 5.44522 5.51005 5.53701 5.56254 5.62682 5.69148 5.77607 5.83104 5.86402 5.91566 6.02109 6.06135 6.38985 6.43608 6.43977 6.54477 6.62448 6.91859 7.25431 7.31155 7.50906 7.77523 8.13839 8.82228 9.43679 10.95387 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.003266 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.809269 B = 8570.667362 C = 9832.820724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.587 4.587 11 S 2.580 3.420 12 O -0.961 6.961 13 O -0.964 6.964 14 N -1.005 6.005 15 C 0.107 3.893 16 C -0.158 4.158 17 C 0.076 3.924 18 O -0.383 6.383 19 C 0.126 3.874 20 H 0.071 0.929 21 C -0.078 4.078 22 C -0.103 4.103 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.093 4.093 27 C 0.099 3.901 28 H 0.265 0.735 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 -20.529 -4.156 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.721 4.721 11 S 2.679 3.321 12 O -0.951 6.951 13 O -0.954 6.954 14 N -0.840 5.840 15 C -0.017 4.017 16 C -0.197 4.197 17 C 0.000 4.000 18 O -0.302 6.302 19 C 0.066 3.934 20 H 0.089 0.911 21 C -0.079 4.079 22 C -0.121 4.121 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.111 4.111 27 C -0.028 4.028 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.104 0.896 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.876 -20.791 -4.196 22.625 hybrid contribution 0.974 1.596 0.132 1.874 sum 8.850 -19.195 -4.064 21.524 Atomic orbital electron populations 1.69964 1.06121 1.27132 1.49581 1.25074 0.94983 0.99577 0.94857 0.86409 0.79939 0.83121 0.77807 1.19628 1.20740 1.20764 1.21035 0.93101 0.89716 1.52137 0.91984 1.18971 0.92674 0.90600 0.98847 1.30461 1.13658 1.17894 1.10069 1.06031 0.75104 0.76698 0.74231 1.93538 1.71347 1.85174 1.45042 1.93524 1.71350 1.85202 1.45352 1.57628 1.59802 1.56133 1.10480 1.21758 1.00597 0.94936 0.84430 1.22384 1.00623 0.94920 1.01810 1.22176 0.96615 1.00977 0.80274 1.86189 1.84027 1.40665 1.19294 1.20839 0.99136 0.86855 0.86552 0.91105 1.19532 0.96383 0.98881 0.93066 1.21149 0.99642 0.99296 0.92045 1.21126 0.97520 0.98536 0.96807 1.21174 0.95828 0.97968 0.98861 1.21140 1.00135 1.00608 0.92716 1.20996 0.96329 0.96789 0.96962 1.22041 0.99197 0.97219 0.84326 0.92549 0.94841 0.94895 0.86224 0.86270 0.88316 0.91455 0.89659 0.90282 0.92663 0.89028 0.85152 0.85861 0.86274 0.86208 0.85575 0.89565 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.22 6.11 37.16 0.23 -10.99 16 11 S 2.58 45.89 5.30 -107.50 -0.57 45.32 16 12 O -0.96 -19.12 16.14 -57.54 -0.93 -20.05 16 13 O -0.96 -19.40 16.37 -57.54 -0.94 -20.35 16 14 N -1.00 -13.55 2.42 -113.25 -0.27 -13.83 16 15 C 0.11 1.19 6.27 -3.20 -0.02 1.17 16 16 C -0.16 -1.44 5.79 -27.18 -0.16 -1.60 16 17 C 0.08 0.82 6.37 36.41 0.23 1.05 16 18 O -0.38 -4.70 8.61 -26.52 -0.23 -4.93 16 19 C 0.13 1.65 2.78 -26.93 -0.07 1.58 16 20 H 0.07 1.06 7.28 -51.93 -0.38 0.69 16 21 C -0.08 -0.96 5.01 -104.62 -0.52 -1.48 16 22 C -0.10 -1.25 9.68 -39.58 -0.38 -1.64 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 25 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 26 C -0.09 -1.01 9.35 -39.58 -0.37 -1.38 16 27 C 0.10 1.24 4.65 -3.83 -0.02 1.22 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 32 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 33 H 0.10 1.18 6.61 -51.93 -0.34 0.83 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 37 H 0.05 0.69 7.40 -51.92 -0.38 0.31 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.13 1.26 7.64 -52.49 -0.40 0.85 16 44 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 45 H 0.09 1.13 7.64 -51.93 -0.40 0.73 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -33.84 376.67 -11.32 -45.15 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.93 Total: 1.97 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.83 Total: -29.45 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.46 Total: -39.43 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -2.10 Total: -45.32 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 45.89 SS G_CDS: -0.57 Total: 45.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.84 -11.32 -45.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609542279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.991 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds