Wall clock time and date at job start Tue Mar 31 2020 22:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46518 * 2 1 4 4 S 1.80994 * 109.47216 * 120.00091 * 2 1 3 5 5 C 1.76204 * 100.00119 * 295.00348 * 4 2 1 6 6 N 1.31547 * 126.45243 * 0.18432 * 5 4 2 7 7 N 1.28413 * 110.49883 * 180.28932 * 6 5 4 8 8 N 1.28901 * 110.34381 * 359.72103 * 7 6 5 9 9 N 1.35389 * 126.45457 * 180.02562 * 5 4 2 10 10 C 1.46501 * 127.38539 * 359.97438 * 9 5 4 11 11 C 1.53000 * 117.50040 * 239.71306 * 10 9 5 12 12 C 1.53002 * 60.02940 * 252.49639 * 11 10 9 13 13 C 1.50704 * 109.47016 * 240.00434 * 2 1 3 14 14 O 1.21279 * 119.99393 * 264.99614 * 13 2 1 15 15 N 1.34779 * 120.00048 * 84.99882 * 13 2 1 16 16 C 1.47067 * 136.05898 * 359.62576 * 15 13 2 17 17 C 1.53746 * 87.88872 * 152.96346 * 16 15 13 18 18 O 1.42897 * 114.39620 * 272.67667 * 17 16 15 19 19 C 1.50698 * 114.26618 * 139.78867 * 17 16 15 20 20 H 1.08006 * 120.00521 * 266.47731 * 19 17 16 21 21 C 1.37877 * 119.99888 * 86.48158 * 19 17 16 22 22 N 1.31514 * 119.99970 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 120.00237 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47370 * 89.99114 * 23 21 19 25 25 H 1.48496 * 109.47168 * 209.99740 * 23 21 19 26 26 H 1.48504 * 109.46643 * 329.99296 * 23 21 19 27 27 C 1.47063 * 136.05612 * 180.02562 * 15 13 2 28 28 H 1.08994 * 109.47090 * 299.99832 * 1 2 3 29 29 H 1.09000 * 109.46993 * 60.00210 * 1 2 3 30 30 H 1.09003 * 109.46518 * 179.97438 * 1 2 3 31 31 H 1.09007 * 115.54992 * 25.38027 * 10 9 5 32 32 H 1.09002 * 117.49833 * 359.97438 * 11 10 9 33 33 H 1.09002 * 117.49953 * 144.99785 * 11 10 9 34 34 H 1.09000 * 117.49996 * 107.50493 * 12 11 10 35 35 H 1.08999 * 117.49664 * 252.51862 * 12 11 10 36 36 H 1.08999 * 113.46714 * 267.70294 * 16 15 13 37 37 H 1.09001 * 113.46329 * 38.13388 * 16 15 13 38 38 H 0.96700 * 113.99960 * 273.58116 * 18 17 16 39 39 H 0.96996 * 120.00214 * 180.02562 * 22 21 19 40 40 H 1.09003 * 113.46756 * 321.86145 * 27 15 13 41 41 H 1.09001 * 113.46843 * 92.24014 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1334 -0.8532 1.4778 5 6 1.5439 0.2422 2.7257 6 7 0.8589 1.3488 2.5343 7 7 0.5923 1.9125 3.6569 8 7 1.0723 1.2190 4.6317 9 7 1.7081 0.1019 4.0623 10 6 2.4039 -0.9794 4.7644 11 6 1.5941 -1.8099 5.7621 12 6 2.6370 -0.8112 6.2678 13 6 2.0324 -0.7103 -1.2306 14 8 2.3208 -1.8871 -1.1760 15 7 2.1611 -0.0379 -2.3915 16 6 1.9194 1.3382 -2.8506 17 6 3.0048 1.1129 -3.9160 18 8 4.3328 1.4046 -3.4764 19 6 2.6807 1.7021 -5.2646 20 1 2.2029 1.0944 -6.0188 21 6 2.9943 3.0171 -5.5357 22 7 3.5758 3.7573 -4.6172 23 14 2.5920 3.7478 -7.2071 24 1 1.2301 4.3387 -7.1742 25 1 3.5822 4.8042 -7.5368 26 1 2.6440 2.6811 -8.2391 27 6 2.5983 -0.3591 -3.7584 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1743 -1.4937 4.1898 32 1 0.5437 -1.5515 5.8964 33 1 1.8317 -2.8705 5.8439 34 1 2.2727 0.1039 6.7347 35 1 3.5609 -1.2149 6.6820 36 1 0.9243 1.4876 -3.2695 37 1 2.1843 2.0949 -2.1122 38 1 4.5855 2.3325 -3.5772 39 1 3.7961 4.6824 -4.8078 40 1 3.4417 -1.0487 -3.7936 41 1 1.7821 -0.6579 -4.4163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619443982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:53 Heat of formation + Delta-G solvation = 109.997654 kcal Electronic energy + Delta-G solvation = -26748.181042 eV Core-core repulsion = 22795.253640 eV Total energy + Delta-G solvation = -3952.927402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.02415 -39.84045 -38.11773 -37.68949 -34.15795 -33.43465 -33.34774 -32.25544 -32.05302 -28.74860 -25.76282 -25.60249 -25.23507 -24.05281 -23.61598 -22.98909 -21.92810 -20.34255 -18.95452 -18.17044 -17.50051 -17.14969 -16.80942 -16.60734 -15.71168 -15.62744 -15.21537 -14.87828 -14.77244 -14.18581 -14.04857 -13.70875 -13.45119 -13.11003 -12.91540 -12.63799 -12.49030 -12.38297 -12.16091 -12.15627 -12.05750 -11.89825 -11.62626 -11.36923 -11.12853 -11.08745 -11.06287 -11.02078 -10.59420 -10.54440 -10.33523 -10.23905 -9.80300 -9.35828 -8.85509 -8.51720 -8.16239 -8.02498 -6.46336 -4.57076 0.50708 0.65452 1.58408 1.74051 2.05428 2.88213 3.02816 3.11386 3.19966 3.22291 3.34344 3.72949 4.09172 4.13428 4.21534 4.39766 4.56778 4.78663 4.79743 4.87698 5.02340 5.07167 5.11109 5.15993 5.37155 5.45495 5.49001 5.63434 5.69451 5.80936 5.87646 6.02010 6.10134 6.28396 6.37784 6.44720 6.58093 7.00985 7.56953 7.72164 8.23305 8.24529 8.42765 8.47452 9.14597 9.40954 10.60541 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.002606 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.042417 B =10743.030011 C =11285.958169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.126 0.874 4 S 0.104 5.896 5 C 0.211 3.789 6 N -0.332 5.332 7 N -0.031 5.031 8 N -0.089 5.089 9 N -0.338 5.338 10 C 0.058 3.942 11 C -0.164 4.164 12 C -0.155 4.155 13 C 0.557 3.443 14 O -0.552 6.552 15 N -0.623 5.623 16 C 0.067 3.933 17 C 0.242 3.758 18 O -0.571 6.571 19 C -0.535 4.535 20 H 0.074 0.926 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.910 3.090 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.110 3.890 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.395 0.605 39 H 0.275 0.725 40 H 0.069 0.931 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 -8.066 16.027 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.237 4.237 3 H 0.145 0.855 4 S 0.330 5.670 5 C -0.173 4.173 6 N -0.189 5.189 7 N -0.027 5.027 8 N -0.076 5.076 9 N -0.135 5.135 10 C -0.046 4.046 11 C -0.203 4.203 12 C -0.193 4.193 13 C 0.343 3.657 14 O -0.432 6.432 15 N -0.355 5.355 16 C -0.055 4.055 17 C 0.200 3.800 18 O -0.384 6.384 19 C -0.573 4.573 20 H 0.092 0.908 21 C -0.130 4.130 22 N -0.537 5.537 23 Si 0.737 3.263 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.012 4.012 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.252 0.748 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.131 -9.034 16.963 19.472 hybrid contribution -0.482 1.610 -1.044 1.978 sum -3.613 -7.424 15.919 17.933 Atomic orbital electron populations 1.22010 0.89512 1.03677 1.04861 1.23612 1.02355 1.04582 0.93159 0.85545 1.86246 1.66190 1.22867 0.91698 1.28117 0.99629 0.99728 0.89781 1.74981 1.18656 1.06110 1.19112 1.77856 1.12738 1.19092 0.93002 1.82400 1.12746 0.93730 1.18689 1.50922 1.39993 1.19068 1.03546 1.22240 1.00281 0.90371 0.91735 1.23534 0.98666 0.98387 0.99683 1.23426 1.01733 1.02369 0.91742 1.18817 0.78430 0.85827 0.82636 1.90688 1.52510 1.15329 1.84684 1.49638 1.62419 1.15075 1.08348 1.24427 1.02515 0.80921 0.97684 1.19555 0.80878 0.88896 0.90656 1.86042 1.29829 1.35735 1.86783 1.21398 1.40747 0.96635 0.98518 0.90821 1.25085 0.93485 0.96619 0.97836 1.69249 1.41355 1.09173 1.33911 0.86295 0.78338 0.78859 0.82846 1.20234 1.20859 1.19488 1.23425 0.98380 1.00213 0.79187 0.89682 0.90313 0.91143 0.82487 0.87584 0.86271 0.86729 0.86402 0.89549 0.91423 0.74813 0.91454 0.91214 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.99 37.16 0.33 -1.59 16 2 C -0.10 -1.62 2.54 -27.88 -0.07 -1.69 16 3 H 0.13 2.02 8.01 -51.91 -0.42 1.60 16 4 S 0.10 1.42 20.71 -107.50 -2.23 -0.81 16 5 C 0.21 2.94 7.84 -89.18 -0.70 2.24 16 6 N -0.33 -5.23 9.70 30.50 0.30 -4.94 16 7 N -0.03 -0.50 13.38 60.35 0.81 0.30 16 8 N -0.09 -1.26 13.45 60.35 0.81 -0.45 16 9 N -0.34 -4.15 4.01 -54.76 -0.22 -4.37 16 10 C 0.06 0.47 6.74 -67.89 -0.46 0.01 16 11 C -0.16 -0.97 10.45 -26.73 -0.28 -1.25 16 12 C -0.15 -0.92 10.23 -26.69 -0.27 -1.19 16 13 C 0.56 10.48 7.20 -10.98 -0.08 10.40 16 14 O -0.55 -11.59 16.91 5.56 0.09 -11.49 16 15 N -0.62 -12.29 3.69 -185.05 -0.68 -12.97 16 16 C 0.07 1.36 7.79 -8.38 -0.07 1.29 16 17 C 0.24 5.52 1.58 -91.12 -0.14 5.37 16 18 O -0.57 -14.15 13.55 -35.23 -0.48 -14.63 16 19 C -0.53 -12.79 8.70 -34.44 -0.30 -13.08 16 20 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 21 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 22 N -0.90 -22.06 11.01 55.43 0.61 -21.45 16 23 Si 0.91 18.86 29.54 -169.99 -5.02 13.84 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 C 0.11 2.25 8.02 -8.50 -0.07 2.18 16 28 H 0.08 1.16 5.90 -51.93 -0.31 0.85 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.16 1.02 8.07 -51.93 -0.42 0.60 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.11 0.82 7.91 -51.93 -0.41 0.41 16 35 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 37 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 38 H 0.40 9.97 6.32 45.56 0.29 10.26 16 39 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -28.81 368.23 -7.26 -36.07 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -4.61 Total: 11.01 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.20 Total: 4.34 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 1.62 Total: -43.88 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.38 Total: -26.13 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.23 Total: -0.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.81 -7.26 -36.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619443982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.067 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds