Wall clock time and date at job start Tue Mar 31 2020 22:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46518 * 2 1 4 4 S 1.80994 * 109.47216 * 120.00091 * 2 1 3 5 5 C 1.76204 * 100.00119 * 295.00348 * 4 2 1 6 6 N 1.31547 * 126.45243 * 0.18432 * 5 4 2 7 7 N 1.28413 * 110.49883 * 180.28932 * 6 5 4 8 8 N 1.28901 * 110.34381 * 359.72103 * 7 6 5 9 9 N 1.35389 * 126.45457 * 180.02562 * 5 4 2 10 10 C 1.46501 * 127.38539 * 359.97438 * 9 5 4 11 11 C 1.53000 * 117.50040 * 239.71306 * 10 9 5 12 12 C 1.53002 * 60.02940 * 252.49639 * 11 10 9 13 13 C 1.50704 * 109.47016 * 240.00434 * 2 1 3 14 14 O 1.21279 * 119.99393 * 264.99614 * 13 2 1 15 15 N 1.34779 * 120.00048 * 84.99882 * 13 2 1 16 16 C 1.47067 * 136.05898 * 359.62576 * 15 13 2 17 17 C 1.53746 * 87.88872 * 152.96346 * 16 15 13 18 18 O 1.42897 * 114.39620 * 272.67667 * 17 16 15 19 19 C 1.50698 * 114.26618 * 139.78867 * 17 16 15 20 20 H 1.08006 * 120.00521 * 266.47731 * 19 17 16 21 21 C 1.37877 * 119.99888 * 86.48158 * 19 17 16 22 22 N 1.31514 * 119.99970 * 359.97438 * 21 19 17 23 23 Si 1.86801 * 120.00237 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47370 * 89.99114 * 23 21 19 25 25 H 1.48496 * 109.47168 * 209.99740 * 23 21 19 26 26 H 1.48504 * 109.46643 * 329.99296 * 23 21 19 27 27 C 1.47063 * 136.05612 * 180.02562 * 15 13 2 28 28 H 1.08994 * 109.47090 * 299.99832 * 1 2 3 29 29 H 1.09000 * 109.46993 * 60.00210 * 1 2 3 30 30 H 1.09003 * 109.46518 * 179.97438 * 1 2 3 31 31 H 1.09007 * 115.54992 * 25.38027 * 10 9 5 32 32 H 1.09002 * 117.49833 * 359.97438 * 11 10 9 33 33 H 1.09002 * 117.49953 * 144.99785 * 11 10 9 34 34 H 1.09000 * 117.49996 * 107.50493 * 12 11 10 35 35 H 1.08999 * 117.49664 * 252.51862 * 12 11 10 36 36 H 1.08999 * 113.46714 * 267.70294 * 16 15 13 37 37 H 1.09001 * 113.46329 * 38.13388 * 16 15 13 38 38 H 0.96700 * 113.99960 * 273.58116 * 18 17 16 39 39 H 0.96996 * 120.00214 * 180.02562 * 22 21 19 40 40 H 1.09003 * 113.46756 * 321.86145 * 27 15 13 41 41 H 1.09001 * 113.46843 * 92.24014 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1334 -0.8532 1.4778 5 6 1.5439 0.2422 2.7257 6 7 0.8589 1.3488 2.5343 7 7 0.5923 1.9125 3.6569 8 7 1.0723 1.2190 4.6317 9 7 1.7081 0.1019 4.0623 10 6 2.4039 -0.9794 4.7644 11 6 1.5941 -1.8099 5.7621 12 6 2.6370 -0.8112 6.2678 13 6 2.0324 -0.7103 -1.2306 14 8 2.3208 -1.8871 -1.1760 15 7 2.1611 -0.0379 -2.3915 16 6 1.9194 1.3382 -2.8506 17 6 3.0048 1.1129 -3.9160 18 8 4.3328 1.4046 -3.4764 19 6 2.6807 1.7021 -5.2646 20 1 2.2029 1.0944 -6.0188 21 6 2.9943 3.0171 -5.5357 22 7 3.5758 3.7573 -4.6172 23 14 2.5920 3.7478 -7.2071 24 1 1.2301 4.3387 -7.1742 25 1 3.5822 4.8042 -7.5368 26 1 2.6440 2.6811 -8.2391 27 6 2.5983 -0.3591 -3.7584 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1743 -1.4937 4.1898 32 1 0.5437 -1.5515 5.8964 33 1 1.8317 -2.8705 5.8439 34 1 2.2727 0.1039 6.7347 35 1 3.5609 -1.2149 6.6820 36 1 0.9243 1.4876 -3.2695 37 1 2.1843 2.0949 -2.1122 38 1 4.5855 2.3325 -3.5772 39 1 3.7961 4.6824 -4.8078 40 1 3.4417 -1.0487 -3.7936 41 1 1.7821 -0.6579 -4.4163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619443982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:52 Heat of formation + Delta-G solvation = 90.735072 kcal Electronic energy + Delta-G solvation = -26749.016330 eV Core-core repulsion = 22795.253640 eV Total energy + Delta-G solvation = -3953.762690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.10088 -41.44033 -39.32979 -38.73990 -35.93826 -34.68331 -34.28842 -34.11266 -33.19572 -30.39179 -27.41945 -26.87717 -26.56801 -25.39247 -24.63856 -23.49772 -22.80531 -21.95480 -20.27438 -19.54633 -19.08025 -18.24879 -18.16258 -17.72774 -17.25056 -16.87974 -16.41047 -16.28905 -16.10557 -15.78893 -15.26209 -14.74437 -14.67051 -14.55325 -14.32893 -13.97949 -13.80069 -13.58553 -13.40989 -13.29760 -13.25927 -13.15731 -12.80577 -12.75129 -12.61298 -12.32510 -12.23243 -12.18447 -12.11022 -11.73388 -11.70668 -11.41953 -11.05108 -10.99352 -10.66644 -10.25884 -9.68736 -9.23374 -8.27175 -6.43753 -0.59862 -0.38284 0.40714 0.86132 0.91514 1.39193 1.48165 1.52152 1.60690 1.83945 2.41340 2.46600 2.93655 3.00305 3.13255 3.38853 3.58206 3.60400 3.71780 3.72052 3.85232 3.98757 4.10173 4.16476 4.39746 4.43402 4.53592 4.61115 4.61759 4.62252 4.74975 4.84942 4.87942 4.91033 5.01897 5.04965 5.08955 5.23367 5.73905 5.90578 6.62268 6.68644 6.88305 7.13782 7.30182 7.48397 8.78901 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.002606 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.042417 B =10743.030011 C =11285.958169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.120 0.880 4 S 0.131 5.869 5 C 0.202 3.798 6 N -0.350 5.350 7 N -0.057 5.057 8 N -0.091 5.091 9 N -0.324 5.324 10 C 0.020 3.980 11 C -0.149 4.149 12 C -0.142 4.142 13 C 0.557 3.443 14 O -0.574 6.574 15 N -0.625 5.625 16 C 0.082 3.918 17 C 0.219 3.781 18 O -0.585 6.585 19 C -0.549 4.549 20 H 0.078 0.922 21 C 0.032 3.968 22 N -0.918 5.918 23 Si 0.969 3.031 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.268 1.268 27 C 0.112 3.888 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.175 0.825 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.101 0.899 35 H 0.148 0.852 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.390 0.610 39 H 0.276 0.724 40 H 0.060 0.940 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -9.151 16.758 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.239 4.239 3 H 0.138 0.862 4 S 0.357 5.643 5 C -0.182 4.182 6 N -0.208 5.208 7 N -0.052 5.052 8 N -0.078 5.078 9 N -0.122 5.122 10 C -0.082 4.082 11 C -0.187 4.187 12 C -0.180 4.180 13 C 0.344 3.656 14 O -0.456 6.456 15 N -0.357 5.357 16 C -0.041 4.041 17 C 0.177 3.823 18 O -0.398 6.398 19 C -0.587 4.587 20 H 0.096 0.904 21 C -0.169 4.169 22 N -0.559 5.559 23 Si 0.794 3.206 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.193 1.193 27 C -0.010 4.010 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.192 0.808 32 H 0.112 0.888 33 H 0.167 0.833 34 H 0.119 0.881 35 H 0.166 0.834 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.246 0.754 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.552 -10.137 17.717 20.719 hybrid contribution -0.281 1.855 -1.166 2.208 sum -3.834 -8.283 16.551 18.901 Atomic orbital electron populations 1.21971 0.87944 1.04264 1.05072 1.23524 1.03595 1.03939 0.92814 0.86188 1.86098 1.66087 1.21888 0.90232 1.28078 0.99942 0.99621 0.90544 1.74887 1.19380 1.06940 1.19567 1.77837 1.14050 1.20043 0.93317 1.82306 1.12720 0.94193 1.18624 1.51200 1.38837 1.18978 1.03156 1.22903 1.01760 0.90458 0.93057 1.23654 0.97911 0.99820 0.97309 1.23557 1.03003 1.01937 0.89507 1.19266 0.77640 0.85639 0.83022 1.90673 1.53432 1.16370 1.85082 1.49621 1.62669 1.14835 1.08559 1.24208 1.02276 0.80969 0.96637 1.19852 0.80607 0.90583 0.91242 1.86025 1.31399 1.35353 1.87051 1.21653 1.40852 0.96977 0.99201 0.90395 1.25761 0.93453 0.97006 1.00644 1.69322 1.41979 1.09334 1.35227 0.85376 0.77999 0.77905 0.79297 1.19773 1.21187 1.19264 1.23415 0.98817 0.98537 0.80207 0.89582 0.89980 0.90322 0.80796 0.88801 0.83334 0.88098 0.83447 0.88072 0.92069 0.75448 0.91421 0.92186 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.99 71.98 0.65 -2.84 16 2 C -0.11 -3.22 2.54 29.85 0.08 -3.14 16 3 H 0.12 3.81 8.01 -2.39 -0.02 3.79 16 4 S 0.13 3.43 20.71 -56.49 -1.17 2.26 16 5 C 0.20 5.47 7.84 179.84 1.41 6.88 16 6 N -0.35 -10.98 9.70 -57.41 -0.56 -11.54 16 7 N -0.06 -1.84 13.38 37.02 0.50 -1.34 16 8 N -0.09 -2.55 13.45 37.02 0.50 -2.06 16 9 N -0.32 -7.63 4.01 -327.17 -1.31 -8.94 16 10 C 0.02 0.29 6.74 45.01 0.30 0.59 16 11 C -0.15 -1.36 10.45 30.60 0.32 -1.04 16 12 C -0.14 -1.33 10.23 30.62 0.31 -1.02 16 13 C 0.56 20.55 7.20 87.66 0.63 21.18 16 14 O -0.57 -23.62 16.91 -3.03 -0.05 -23.67 16 15 N -0.62 -24.30 3.69 -858.25 -3.16 -27.47 16 16 C 0.08 3.27 7.79 83.26 0.65 3.92 16 17 C 0.22 9.95 1.58 -11.11 -0.02 9.93 16 18 O -0.59 -29.47 13.55 -148.98 -2.02 -31.49 16 19 C -0.55 -25.98 8.70 25.60 0.22 -25.75 16 20 H 0.08 3.53 7.81 -2.91 -0.02 3.51 16 21 C 0.03 1.51 5.39 84.65 0.46 1.97 16 22 N -0.92 -45.29 11.01 21.45 0.24 -45.05 16 23 Si 0.97 38.20 29.54 68.60 2.03 40.23 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 25 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 27 C 0.11 4.54 8.02 83.18 0.67 5.21 16 28 H 0.09 2.27 5.90 -2.39 -0.01 2.26 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.17 1.83 8.07 -2.38 -0.02 1.81 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 1.28 7.91 -2.39 -0.02 1.26 16 35 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.10 3.72 8.10 -2.39 -0.02 3.70 16 37 H 0.06 2.50 8.08 -2.39 -0.02 2.48 16 38 H 0.39 20.11 6.32 -74.06 -0.47 19.64 16 39 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 40 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.11 3.94 8.10 -2.39 -0.02 3.92 16 Total: -1.00 -61.41 368.23 1.27 -60.14 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.61 Total: 33.05 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 5.68 Total: 15.88 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -3.80 Total: -96.40 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -2.07 Total: -55.16 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.17 Total: 2.26 kcal Total: -61.41 1.27 -60.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619443982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.872 kcal (2) G-P(sol) polarization free energy of solvation -61.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds