Wall clock time and date at job start Tue Mar 31 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 S 1.81009 * 109.46810 * 240.00517 * 2 1 3 5 5 C 1.76199 * 100.00085 * 64.99832 * 4 2 1 6 6 N 1.31548 * 126.44947 * 359.68831 * 5 4 2 7 7 N 1.28432 * 110.49322 * 179.81611 * 6 5 4 8 8 N 1.28900 * 110.34428 * 0.46121 * 7 6 5 9 9 N 1.35396 * 126.45400 * 180.02562 * 5 4 2 10 10 C 1.46501 * 127.38395 * 359.96528 * 9 5 4 11 11 C 1.52999 * 117.50077 * 188.62413 * 10 9 5 12 12 C 1.52996 * 117.50183 * 119.99818 * 10 9 5 13 13 C 1.50693 * 109.47262 * 120.00684 * 2 1 3 14 14 O 1.21276 * 120.00097 * 99.99825 * 13 2 1 15 15 N 1.34781 * 119.99837 * 279.99684 * 13 2 1 16 16 C 1.47571 * 134.49423 * 180.02562 * 15 13 2 17 17 C 1.53946 * 86.11996 * 155.35733 * 16 15 13 18 18 O 1.42904 * 113.73883 * 269.15369 * 17 16 15 19 19 C 1.50701 * 113.74318 * 137.95533 * 17 16 15 20 20 H 1.08002 * 119.99761 * 1.91855 * 19 17 16 21 21 C 1.37871 * 119.99694 * 182.20418 * 19 17 16 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 17 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 17 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47301 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47430 * 239.99516 * 23 21 19 27 27 C 1.47807 * 134.45550 * 359.86561 * 15 13 2 28 28 H 1.09004 * 109.46835 * 300.00028 * 1 2 3 29 29 H 1.08998 * 109.47329 * 59.99676 * 1 2 3 30 30 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 31 31 H 1.09002 * 115.54940 * 334.33189 * 10 9 5 32 32 H 1.09001 * 117.49418 * 0.02562 * 11 10 9 33 33 H 1.08996 * 117.50109 * 145.01586 * 11 10 9 34 34 H 1.09000 * 117.50217 * 214.97829 * 12 10 9 35 35 H 1.09001 * 117.49780 * 359.97438 * 12 10 9 36 36 H 1.09004 * 113.77444 * 41.05348 * 16 15 13 37 37 H 1.09000 * 113.77320 * 269.65884 * 16 15 13 38 38 H 0.96703 * 113.99734 * 178.06891 * 18 17 16 39 39 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 40 40 H 1.08997 * 113.77160 * 90.37973 * 27 15 13 41 41 H 1.09008 * 113.84085 * 318.92046 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8532 -1.4780 5 6 1.5438 0.2424 -2.7258 6 7 0.8569 1.3478 -2.5343 7 7 0.5890 1.9110 -3.6571 8 7 1.0668 1.2162 -4.6321 9 7 1.7070 0.1017 -4.0625 10 6 2.4027 -0.9795 -4.7647 11 6 2.6288 -0.8144 -6.2689 12 6 1.5909 -1.8150 -5.7565 13 6 2.0323 -0.7105 1.2303 14 8 2.4064 -1.8617 1.1555 15 7 2.0659 -0.0666 2.4139 16 6 2.4822 -0.4357 3.7807 17 6 2.7092 1.0702 4.0058 18 8 4.0354 1.5043 3.6980 19 6 2.2258 1.5631 5.3453 20 1 1.7981 0.8691 6.0538 21 6 2.3240 2.9009 5.6640 22 7 2.8447 3.7459 4.8012 23 14 1.7176 3.5132 7.3213 24 1 1.1788 2.3719 8.1037 25 1 2.8450 4.1337 8.0626 26 1 0.6466 4.5209 7.1151 27 6 1.7031 1.2942 2.8626 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1771 -1.4901 -4.1921 32 1 2.2603 0.0990 -6.7359 33 1 3.5521 -1.2162 -6.6861 34 1 1.8314 -2.8751 -5.8368 35 1 0.5390 -1.5604 -5.8862 36 1 3.3965 -1.0281 3.8167 37 1 1.6787 -0.8543 4.3867 38 1 4.1740 2.4548 3.8099 39 1 2.9135 4.6871 5.0253 40 1 0.6701 1.3853 3.1982 41 1 1.9966 2.0805 2.1670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619443983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:55 Heat of formation + Delta-G solvation = 105.505788 kcal Electronic energy + Delta-G solvation = -26763.867555 eV Core-core repulsion = 22810.745371 eV Total energy + Delta-G solvation = -3953.122184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.01874 -39.75846 -38.12152 -37.60509 -34.09753 -33.41954 -33.34138 -32.28190 -32.04962 -28.63631 -25.73838 -25.58784 -25.38945 -24.05626 -23.61415 -22.99151 -21.92291 -20.24100 -18.94270 -18.16298 -17.46183 -17.14666 -16.82655 -16.61704 -15.71768 -15.63654 -15.19633 -14.91388 -14.73884 -14.14653 -14.04894 -13.72264 -13.43187 -13.09191 -12.84475 -12.61582 -12.48958 -12.38491 -12.16352 -12.15051 -12.03658 -11.89079 -11.63734 -11.36876 -11.17030 -11.10514 -11.06533 -11.01768 -10.58554 -10.54769 -10.35056 -10.23891 -9.79214 -9.36863 -8.83196 -8.54193 -8.16345 -8.01096 -6.44609 -4.55214 0.51766 0.65719 1.60080 1.74360 2.05659 2.88274 3.02709 3.11217 3.21038 3.23948 3.34319 3.73050 4.08970 4.14826 4.21385 4.39816 4.55029 4.80007 4.81782 4.87782 5.02163 5.07443 5.11171 5.16162 5.37071 5.46548 5.48794 5.65379 5.70909 5.84797 5.87797 6.02579 6.11660 6.26035 6.38576 6.44853 6.57693 7.00099 7.57849 7.74474 8.21804 8.24717 8.42421 8.48607 9.16174 9.34786 10.62344 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.002605 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.294788 B =10744.573456 C =11341.971295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.127 0.873 4 S 0.105 5.895 5 C 0.211 3.789 6 N -0.332 5.332 7 N -0.031 5.031 8 N -0.089 5.089 9 N -0.338 5.338 10 C 0.058 3.942 11 C -0.155 4.155 12 C -0.164 4.164 13 C 0.550 3.450 14 O -0.553 6.553 15 N -0.620 5.620 16 C 0.116 3.884 17 C 0.240 3.760 18 O -0.572 6.572 19 C -0.538 4.538 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.075 3.925 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.158 0.842 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.393 0.607 39 H 0.273 0.727 40 H 0.087 0.913 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -8.218 -16.516 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.238 4.238 3 H 0.145 0.855 4 S 0.330 5.670 5 C -0.173 4.173 6 N -0.189 5.189 7 N -0.027 5.027 8 N -0.076 5.076 9 N -0.136 5.136 10 C -0.046 4.046 11 C -0.193 4.193 12 C -0.203 4.203 13 C 0.336 3.664 14 O -0.434 6.434 15 N -0.353 5.353 16 C -0.006 4.006 17 C 0.198 3.802 18 O -0.384 6.384 19 C -0.576 4.576 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.536 5.536 23 Si 0.734 3.266 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.207 1.207 27 C -0.047 4.047 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.916 -9.151 -17.425 19.774 hybrid contribution -0.657 1.571 1.045 1.998 sum -2.572 -7.579 -16.380 18.231 Atomic orbital electron populations 1.22015 0.89551 1.03634 1.04927 1.23638 1.02380 1.04595 0.93184 0.85513 1.86264 1.66150 1.22839 0.91707 1.28152 0.99576 0.99777 0.89810 1.74992 1.18584 1.06183 1.19099 1.77862 1.12784 1.19043 0.93005 1.82399 1.12667 0.93837 1.18683 1.50926 1.39908 1.19190 1.03540 1.22224 1.00234 0.90366 0.91776 1.23413 1.01783 1.02358 0.91727 1.23532 0.98681 0.98327 0.99747 1.18999 0.78799 0.85609 0.83011 1.90681 1.50468 1.16996 1.85229 1.50160 1.61563 1.16836 1.06730 1.23543 0.99071 0.99552 0.78430 1.19830 0.81024 0.88206 0.91169 1.86061 1.29465 1.31962 1.90914 1.21495 1.41523 0.93777 1.00808 0.90919 1.25070 0.93785 0.96474 0.97702 1.69400 1.44545 1.04319 1.35317 0.86283 0.78594 0.78875 0.82809 1.19432 1.20629 1.20654 1.24495 1.01774 0.81105 0.97317 0.90211 0.89714 0.91220 0.82496 0.86733 0.86411 0.86275 0.87585 0.90806 0.89224 0.75233 0.91644 0.89492 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.99 37.16 0.33 -1.61 16 2 C -0.11 -1.63 2.45 -27.89 -0.07 -1.69 16 3 H 0.13 2.00 8.11 -51.92 -0.42 1.58 16 4 S 0.10 1.42 20.66 -107.50 -2.22 -0.81 16 5 C 0.21 2.92 7.84 -89.17 -0.70 2.22 16 6 N -0.33 -5.22 9.69 30.50 0.30 -4.93 16 7 N -0.03 -0.50 13.38 60.35 0.81 0.30 16 8 N -0.09 -1.26 13.45 60.35 0.81 -0.45 16 9 N -0.34 -4.14 4.01 -54.80 -0.22 -4.36 16 10 C 0.06 0.47 6.73 -67.93 -0.46 0.01 16 11 C -0.16 -0.91 10.22 -26.73 -0.27 -1.19 16 12 C -0.16 -0.97 10.46 -26.73 -0.28 -1.25 16 13 C 0.55 10.27 7.23 -10.99 -0.08 10.19 16 14 O -0.55 -11.54 16.77 5.56 0.09 -11.45 16 15 N -0.62 -12.15 3.61 -178.14 -0.64 -12.79 16 16 C 0.12 2.35 8.23 -2.97 -0.02 2.33 16 17 C 0.24 5.41 1.40 -90.86 -0.13 5.29 16 18 O -0.57 -14.02 13.48 -35.23 -0.48 -14.49 16 19 C -0.54 -12.86 8.61 -34.44 -0.30 -13.15 16 20 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 21 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 22 N -0.90 -21.96 11.21 55.43 0.62 -21.34 16 23 Si 0.91 18.92 29.54 -169.99 -5.02 13.90 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 27 C 0.08 1.51 7.99 -2.85 -0.02 1.49 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.16 5.89 -51.93 -0.31 0.85 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.16 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.11 0.81 7.91 -51.93 -0.41 0.40 16 33 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 38 H 0.39 9.77 6.61 45.56 0.30 10.07 16 39 H 0.27 6.40 8.31 -40.82 -0.34 6.07 16 40 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 41 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -28.71 368.58 -7.09 -35.80 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -4.60 Total: 10.75 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.09 Total: 4.30 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 1.67 Total: -43.57 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.38 Total: -25.94 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.22 Total: -0.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.71 -7.09 -35.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619443983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.306 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds