Wall clock time and date at job start Tue Mar 31 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 S 1.81009 * 109.46810 * 240.00517 * 2 1 3 5 5 C 1.76199 * 100.00085 * 64.99832 * 4 2 1 6 6 N 1.31548 * 126.44947 * 359.68831 * 5 4 2 7 7 N 1.28432 * 110.49322 * 179.81611 * 6 5 4 8 8 N 1.28900 * 110.34428 * 0.46121 * 7 6 5 9 9 N 1.35396 * 126.45400 * 180.02562 * 5 4 2 10 10 C 1.46501 * 127.38395 * 359.96528 * 9 5 4 11 11 C 1.52999 * 117.50077 * 188.62413 * 10 9 5 12 12 C 1.52996 * 117.50183 * 119.99818 * 10 9 5 13 13 C 1.50693 * 109.47262 * 120.00684 * 2 1 3 14 14 O 1.21276 * 120.00097 * 99.99825 * 13 2 1 15 15 N 1.34781 * 119.99837 * 279.99684 * 13 2 1 16 16 C 1.47571 * 134.49423 * 180.02562 * 15 13 2 17 17 C 1.53946 * 86.11996 * 155.35733 * 16 15 13 18 18 O 1.42904 * 113.73883 * 269.15369 * 17 16 15 19 19 C 1.50701 * 113.74318 * 137.95533 * 17 16 15 20 20 H 1.08002 * 119.99761 * 1.91855 * 19 17 16 21 21 C 1.37871 * 119.99694 * 182.20418 * 19 17 16 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 17 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 17 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47301 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47430 * 239.99516 * 23 21 19 27 27 C 1.47807 * 134.45550 * 359.86561 * 15 13 2 28 28 H 1.09004 * 109.46835 * 300.00028 * 1 2 3 29 29 H 1.08998 * 109.47329 * 59.99676 * 1 2 3 30 30 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 31 31 H 1.09002 * 115.54940 * 334.33189 * 10 9 5 32 32 H 1.09001 * 117.49418 * 0.02562 * 11 10 9 33 33 H 1.08996 * 117.50109 * 145.01586 * 11 10 9 34 34 H 1.09000 * 117.50217 * 214.97829 * 12 10 9 35 35 H 1.09001 * 117.49780 * 359.97438 * 12 10 9 36 36 H 1.09004 * 113.77444 * 41.05348 * 16 15 13 37 37 H 1.09000 * 113.77320 * 269.65884 * 16 15 13 38 38 H 0.96703 * 113.99734 * 178.06891 * 18 17 16 39 39 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 40 40 H 1.08997 * 113.77160 * 90.37973 * 27 15 13 41 41 H 1.09008 * 113.84085 * 318.92046 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8532 -1.4780 5 6 1.5438 0.2424 -2.7258 6 7 0.8569 1.3478 -2.5343 7 7 0.5890 1.9110 -3.6571 8 7 1.0668 1.2162 -4.6321 9 7 1.7070 0.1017 -4.0625 10 6 2.4027 -0.9795 -4.7647 11 6 2.6288 -0.8144 -6.2689 12 6 1.5909 -1.8150 -5.7565 13 6 2.0323 -0.7105 1.2303 14 8 2.4064 -1.8617 1.1555 15 7 2.0659 -0.0666 2.4139 16 6 2.4822 -0.4357 3.7807 17 6 2.7092 1.0702 4.0058 18 8 4.0354 1.5043 3.6980 19 6 2.2258 1.5631 5.3453 20 1 1.7981 0.8691 6.0538 21 6 2.3240 2.9009 5.6640 22 7 2.8447 3.7459 4.8012 23 14 1.7176 3.5132 7.3213 24 1 1.1788 2.3719 8.1037 25 1 2.8450 4.1337 8.0626 26 1 0.6466 4.5209 7.1151 27 6 1.7031 1.2942 2.8626 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1771 -1.4901 -4.1921 32 1 2.2603 0.0990 -6.7359 33 1 3.5521 -1.2162 -6.6861 34 1 1.8314 -2.8751 -5.8368 35 1 0.5390 -1.5604 -5.8862 36 1 3.3965 -1.0281 3.8167 37 1 1.6787 -0.8543 4.3867 38 1 4.1740 2.4548 3.8099 39 1 2.9135 4.6871 5.0253 40 1 0.6701 1.3853 3.1982 41 1 1.9966 2.0805 2.1670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619443983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:55 Heat of formation + Delta-G solvation = 86.416654 kcal Electronic energy + Delta-G solvation = -26764.695322 eV Core-core repulsion = 22810.745371 eV Total energy + Delta-G solvation = -3953.949951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.09106 -41.34377 -39.24510 -38.74017 -35.85166 -34.67178 -34.28066 -34.13604 -33.18788 -30.27705 -27.36507 -27.04306 -26.55895 -25.39038 -24.63091 -23.49735 -22.79143 -21.84970 -20.25795 -19.50632 -19.06970 -18.26355 -18.15584 -17.72054 -17.26619 -16.85432 -16.42003 -16.26388 -16.10084 -15.75431 -15.26054 -14.74056 -14.58380 -14.53228 -14.28802 -14.00154 -13.77950 -13.57519 -13.41961 -13.28703 -13.25412 -13.14127 -12.84863 -12.78261 -12.61111 -12.31967 -12.23507 -12.19697 -12.10529 -11.72702 -11.69287 -11.40838 -11.05294 -10.99097 -10.64629 -10.27863 -9.66834 -9.22192 -8.25741 -6.42045 -0.58001 -0.37558 0.43138 0.86925 0.92191 1.39828 1.46397 1.51998 1.61183 1.84064 2.41716 2.46964 2.95684 3.00910 3.11625 3.39552 3.59595 3.61044 3.72090 3.74121 3.86288 3.99326 4.15366 4.17020 4.41442 4.43859 4.54584 4.60329 4.61409 4.61995 4.76200 4.85270 4.88198 4.92024 5.03183 5.05125 5.09563 5.24010 5.74339 5.93364 6.64269 6.66805 6.88743 7.14414 7.31369 7.44191 8.80300 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.002605 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.294788 B =10744.573456 C =11341.971295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 H 0.121 0.879 4 S 0.133 5.867 5 C 0.202 3.798 6 N -0.351 5.351 7 N -0.058 5.058 8 N -0.092 5.092 9 N -0.324 5.324 10 C 0.021 3.979 11 C -0.142 4.142 12 C -0.149 4.149 13 C 0.550 3.450 14 O -0.575 6.575 15 N -0.622 5.622 16 C 0.118 3.882 17 C 0.218 3.782 18 O -0.585 6.585 19 C -0.552 4.552 20 H 0.074 0.926 21 C 0.033 3.967 22 N -0.916 5.916 23 Si 0.965 3.035 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.279 1.279 27 C 0.090 3.910 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.175 0.825 32 H 0.100 0.900 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.099 0.901 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -9.402 -17.366 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.240 4.240 3 H 0.139 0.861 4 S 0.359 5.641 5 C -0.182 4.182 6 N -0.208 5.208 7 N -0.053 5.053 8 N -0.079 5.079 9 N -0.122 5.122 10 C -0.081 4.081 11 C -0.180 4.180 12 C -0.188 4.188 13 C 0.338 3.662 14 O -0.457 6.457 15 N -0.354 5.354 16 C -0.004 4.004 17 C 0.177 3.823 18 O -0.397 6.397 19 C -0.590 4.590 20 H 0.093 0.907 21 C -0.168 4.168 22 N -0.556 5.556 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.205 1.205 27 C -0.032 4.032 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.192 0.808 32 H 0.119 0.881 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.242 0.758 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.241 -10.353 -18.298 21.143 hybrid contribution -0.481 1.855 1.209 2.266 sum -2.721 -8.498 -17.089 19.278 Atomic orbital electron populations 1.21972 0.88099 1.04211 1.05039 1.23544 1.03531 1.04020 0.92896 0.86079 1.86114 1.66005 1.21827 0.90182 1.28122 0.99874 0.99668 0.90580 1.74897 1.19321 1.07029 1.19556 1.77844 1.14109 1.20005 0.93326 1.82305 1.12642 0.94305 1.18624 1.51203 1.38757 1.19099 1.03155 1.22888 1.01692 0.90437 0.93097 1.23543 1.03041 1.01909 0.89517 1.23651 0.97913 0.99762 0.97426 1.19418 0.78021 0.85403 0.83398 1.90666 1.51369 1.18028 1.85618 1.50110 1.61764 1.16592 1.06960 1.23530 0.99504 0.98042 0.79334 1.20123 0.80712 0.89749 0.91751 1.86047 1.30993 1.31578 1.91085 1.21730 1.41635 0.94089 1.01529 0.90745 1.25714 0.93997 0.96677 1.00366 1.69469 1.45119 1.04475 1.36516 0.85385 0.77824 0.78262 0.79417 1.19015 1.21023 1.20505 1.24268 1.01610 0.81202 0.96132 0.90052 0.89634 0.90369 0.80765 0.88118 0.83437 0.83337 0.88836 0.91589 0.87290 0.75836 0.91578 0.88325 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.99 71.98 0.65 -2.88 16 2 C -0.11 -3.23 2.45 29.85 0.07 -3.16 16 3 H 0.12 3.80 8.11 -2.39 -0.02 3.78 16 4 S 0.13 3.45 20.66 -56.49 -1.17 2.28 16 5 C 0.20 5.42 7.84 179.84 1.41 6.83 16 6 N -0.35 -10.97 9.69 -57.41 -0.56 -11.52 16 7 N -0.06 -1.85 13.38 37.02 0.50 -1.35 16 8 N -0.09 -2.56 13.45 37.02 0.50 -2.06 16 9 N -0.32 -7.59 4.01 -327.29 -1.31 -8.91 16 10 C 0.02 0.30 6.73 44.99 0.30 0.60 16 11 C -0.14 -1.32 10.22 30.59 0.31 -1.00 16 12 C -0.15 -1.36 10.46 30.59 0.32 -1.04 16 13 C 0.55 20.14 7.23 87.65 0.63 20.77 16 14 O -0.57 -23.46 16.77 -3.02 -0.05 -23.51 16 15 N -0.62 -23.99 3.61 -839.71 -3.03 -27.02 16 16 C 0.12 4.73 8.23 86.49 0.71 5.44 16 17 C 0.22 9.83 1.40 -10.89 -0.02 9.81 16 18 O -0.59 -29.05 13.48 -148.98 -2.01 -31.05 16 19 C -0.55 -26.13 8.61 25.60 0.22 -25.91 16 20 H 0.07 3.42 7.81 -2.91 -0.02 3.39 16 21 C 0.03 1.58 5.40 84.65 0.46 2.04 16 22 N -0.92 -44.90 11.21 21.45 0.24 -44.66 16 23 Si 0.97 38.37 29.54 68.60 2.03 40.39 16 24 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 25 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 26 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 27 C 0.09 3.59 7.99 86.43 0.69 4.28 16 28 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.08 2.27 5.89 -2.39 -0.01 2.26 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.18 1.79 8.08 -2.39 -0.02 1.77 16 32 H 0.10 1.27 7.91 -2.39 -0.02 1.25 16 33 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.11 3.90 8.09 -2.39 -0.02 3.88 16 38 H 0.39 19.67 6.61 -74.06 -0.49 19.18 16 39 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 40 H 0.10 3.67 8.09 -2.39 -0.02 3.65 16 41 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 Total: -1.00 -60.99 368.58 1.49 -59.50 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.59 Total: 32.14 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 5.76 Total: 15.78 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -3.67 Total: -95.53 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -2.06 Total: -54.57 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.39 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.17 Total: 2.28 kcal Total: -60.99 1.49 -59.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619443983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.919 kcal (2) G-P(sol) polarization free energy of solvation -60.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds