Wall clock time and date at job start Tue Mar 31 2020 22:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48497 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47213 * 299.99969 * 3 2 1 6 6 H 1.48494 * 109.47116 * 60.00062 * 3 2 1 7 7 C 1.39948 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99794 * 162.21122 * 7 2 1 9 9 C 1.41393 * 119.99976 * 342.21254 * 7 2 1 10 10 C 1.40737 * 120.24481 * 335.28503 * 9 7 2 11 11 C 1.37591 * 119.74293 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25254 * 359.72131 * 11 10 9 13 13 C 1.38617 * 120.49962 * 0.55542 * 12 11 10 14 14 S 1.76196 * 119.87802 * 179.71850 * 13 12 11 15 15 O 1.42101 * 106.40432 * 156.18301 * 14 13 12 16 16 O 1.42108 * 106.40279 * 23.26739 * 14 13 12 17 17 N 1.65602 * 107.22158 * 269.72552 * 14 13 12 18 18 C 1.46504 * 119.99657 * 64.99976 * 17 14 13 19 19 C 1.52994 * 109.46967 * 165.00453 * 18 17 14 20 20 C 1.52997 * 109.47197 * 179.97438 * 19 18 17 21 21 O 1.42904 * 109.47216 * 179.97438 * 20 19 18 22 22 C 1.42902 * 113.99924 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47225 * 180.02562 * 22 21 20 24 24 C 1.52998 * 117.49941 * 243.62283 * 23 22 21 25 25 C 1.52994 * 117.50055 * 174.99896 * 23 22 21 26 26 C 1.37640 * 120.24628 * 359.44290 * 13 12 11 27 27 H 0.97006 * 120.00135 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.12570 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.87300 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.75686 * 180.29089 * 12 11 10 31 31 H 0.96995 * 119.99996 * 244.99980 * 17 14 13 32 32 H 1.08997 * 109.47078 * 45.00192 * 18 17 14 33 33 H 1.09003 * 109.46879 * 285.00082 * 18 17 14 34 34 H 1.08999 * 109.47612 * 59.99443 * 19 18 17 35 35 H 1.09003 * 109.47018 * 299.99544 * 19 18 17 36 36 H 1.09008 * 109.47141 * 60.00068 * 20 19 18 37 37 H 1.08996 * 109.47398 * 300.00010 * 20 19 18 38 38 H 1.08997 * 109.47370 * 59.99602 * 22 21 20 39 39 H 1.09005 * 109.46706 * 300.00072 * 22 21 20 40 40 H 1.09006 * 115.54791 * 29.32854 * 23 22 21 41 41 H 1.08998 * 117.50006 * 359.97438 * 24 23 22 42 42 H 1.09004 * 117.50216 * 145.01649 * 24 23 22 43 43 H 1.09003 * 117.49740 * 214.97736 * 25 23 22 44 44 H 1.08995 * 117.50048 * 359.97438 * 25 23 22 45 45 H 1.08000 * 120.13172 * 180.24999 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0492 -1.2341 -0.2863 9 6 1.3517 -2.4074 0.3730 10 6 0.2235 -2.3639 1.2133 11 6 -0.4068 -3.5336 1.5707 12 6 0.0619 -4.7513 1.1017 13 6 1.1756 -4.8065 0.2782 14 16 1.7616 -6.3634 -0.3024 15 8 2.4873 -6.0996 -1.4953 16 8 0.6561 -7.2546 -0.2463 17 7 2.8640 -6.9156 0.8031 18 6 2.4330 -7.2506 2.1627 19 6 3.5230 -8.0705 2.8557 20 6 3.0733 -8.4199 4.2757 21 8 4.0911 -9.1863 4.9228 22 6 3.7690 -9.5671 6.2620 23 6 4.9237 -10.3781 6.8533 24 6 4.6440 -11.8344 7.2298 25 6 4.8224 -10.7817 8.3256 26 6 1.8219 -3.6491 -0.0923 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1454 -1.4163 1.5768 29 1 -1.2730 -3.5027 2.2151 30 1 -0.4418 -5.6641 1.3835 31 1 3.7949 -7.0172 0.5506 32 1 1.5127 -7.8329 2.1190 33 1 2.2562 -6.3331 2.7242 34 1 4.4434 -7.4883 2.8993 35 1 3.6998 -8.9880 2.2942 36 1 2.1527 -9.0021 4.2325 37 1 2.8967 -7.5023 4.8370 38 1 2.8629 -10.1728 6.2596 39 1 3.6070 -8.6734 6.8648 40 1 5.9135 -10.1398 6.4637 41 1 3.6373 -12.2146 7.0567 42 1 5.4498 -12.5547 7.0879 43 1 5.7455 -10.8093 8.9046 44 1 3.9333 -10.4690 8.8731 45 1 2.6870 -3.6940 -0.7373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619474311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:30 Heat of formation + Delta-G solvation = -92.536264 kcal Electronic energy + Delta-G solvation = -26078.429539 eV Core-core repulsion = 22187.967200 eV Total energy + Delta-G solvation = -3890.462339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.81164 -37.65806 -37.16080 -36.66576 -35.68897 -35.29480 -33.85811 -31.39736 -30.09474 -29.80786 -27.45079 -25.50961 -24.71946 -22.78011 -22.08749 -21.81822 -21.01060 -20.86700 -19.06969 -17.98159 -17.27848 -16.88532 -16.51790 -16.11866 -15.94241 -15.47116 -15.18613 -14.91922 -14.78760 -14.50405 -14.35173 -13.58421 -13.48126 -13.34381 -12.98691 -12.60473 -12.45347 -11.96303 -11.93434 -11.76649 -11.60635 -11.54482 -11.44606 -11.38980 -11.35180 -11.26242 -11.24409 -11.04510 -10.89018 -10.78713 -10.59934 -10.53402 -9.81198 -9.75869 -9.69496 -9.37161 -9.18187 -8.05647 -7.71931 -6.93923 -4.54917 1.00890 2.18053 2.61001 2.99382 3.02634 3.05828 3.11518 3.45838 3.64393 3.82021 4.23430 4.40408 4.42229 4.49505 4.61574 4.78704 4.86925 4.93380 4.96155 5.05584 5.17620 5.23161 5.26522 5.31060 5.37667 5.40547 5.48146 5.57511 5.69703 5.72216 5.83813 5.98315 6.02544 6.14544 6.17717 6.64266 6.74246 6.82805 6.95551 7.01710 7.17041 7.22091 7.36788 7.70497 7.79167 7.92618 8.38643 8.65462 8.70202 10.01811 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.002248 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.951356 B =12452.920245 C =13648.788860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.091 3.909 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.149 4.149 13 C -0.631 4.631 14 S 2.691 3.309 15 O -0.971 6.971 16 O -0.975 6.975 17 N -1.121 6.121 18 C 0.122 3.878 19 C -0.124 4.124 20 C 0.063 3.937 21 O -0.386 6.386 22 C 0.093 3.907 23 C -0.154 4.154 24 C -0.178 4.178 25 C -0.175 4.175 26 C -0.124 4.124 27 H 0.283 0.717 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.414 0.586 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.286 -14.246 13.088 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.087 3.913 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.171 4.171 13 C -0.723 4.723 14 S 2.787 3.213 15 O -0.962 6.962 16 O -0.965 6.965 17 N -0.879 5.879 18 C -0.005 4.005 19 C -0.163 4.163 20 C -0.014 4.014 21 O -0.306 6.306 22 C 0.016 3.984 23 C -0.172 4.172 24 C -0.215 4.215 25 C -0.212 4.212 26 C -0.146 4.146 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.248 0.752 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.814 -14.583 12.255 19.916 hybrid contribution 0.317 1.524 0.488 1.631 sum 6.131 -13.059 12.743 19.249 Atomic orbital electron populations 1.69790 1.07680 1.29567 1.34787 1.25950 0.94788 1.01608 0.92069 0.86196 0.81011 0.80534 0.78676 1.18229 1.19834 1.19611 1.19640 0.98388 0.90961 1.39907 0.89879 1.17699 0.91844 0.92063 0.89682 1.21636 0.97614 0.97112 0.97424 1.20809 0.99339 0.93187 1.00728 1.20089 0.97310 0.97449 1.02212 1.29736 1.09093 1.17900 1.15594 1.01617 0.72748 0.74437 0.72538 1.93544 1.72792 1.86249 1.43570 1.93509 1.52455 1.64067 1.86467 1.55555 1.24109 1.83465 1.24784 1.21082 0.97612 0.99555 0.82202 1.21654 0.99420 1.01172 0.94035 1.22427 0.90706 0.94949 0.93337 1.87848 1.43142 1.72922 1.26654 1.21988 0.95714 0.97399 0.83263 1.22151 1.00530 0.97014 0.97471 1.23077 1.03117 0.92038 1.03273 1.22978 1.03608 1.03622 0.91004 1.20759 1.01075 0.91721 1.01024 0.90587 0.85789 0.88394 0.87589 0.75230 0.90223 0.91078 0.90244 0.90303 0.92818 0.92657 0.93137 0.92787 0.86814 0.88640 0.88604 0.88390 0.88623 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.72 10.97 55.55 0.61 -19.11 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.72 9.05 -37.74 -0.34 -12.07 16 8 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 9 C 0.09 2.32 5.57 -106.82 -0.60 1.73 16 10 C -0.12 -2.90 8.70 -38.87 -0.34 -3.24 16 11 C -0.12 -2.67 10.02 -39.66 -0.40 -3.06 16 12 C -0.15 -3.16 9.53 -39.29 -0.37 -3.53 16 13 C -0.63 -13.52 5.94 -39.66 -0.24 -13.76 16 14 S 2.69 49.38 5.73 -107.50 -0.62 48.77 16 15 O -0.97 -20.30 17.27 -57.17 -0.99 -21.29 16 16 O -0.97 -19.56 16.73 -57.17 -0.96 -20.52 16 17 N -1.12 -15.33 6.00 -10.61 -0.06 -15.39 16 18 C 0.12 1.45 6.22 -4.04 -0.03 1.43 16 19 C -0.12 -1.23 5.73 -26.74 -0.15 -1.38 16 20 C 0.06 0.59 5.94 37.16 0.22 0.81 16 21 O -0.39 -4.08 10.34 -35.23 -0.36 -4.45 16 22 C 0.09 0.78 6.22 37.16 0.23 1.01 16 23 C -0.15 -1.18 6.06 -90.63 -0.55 -1.73 16 24 C -0.18 -1.16 10.18 -26.73 -0.27 -1.43 16 25 C -0.18 -1.06 10.25 -26.74 -0.27 -1.33 16 26 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 27 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16 28 H 0.12 3.10 6.18 -52.49 -0.32 2.78 16 29 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.11 2.00 7.59 -52.49 -0.40 1.60 16 31 H 0.41 4.72 8.65 -34.47 -0.30 4.42 16 32 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.38 7.88 -51.93 -0.41 -0.03 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.58 8.03 -51.93 -0.42 0.17 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.11 2.55 7.60 -52.49 -0.40 2.16 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -31.11 391.13 -11.92 -43.03 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.85 Total: 8.32 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: -3.55 Total: -38.19 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.55 Total: -34.50 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -2.31 Total: -46.26 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 49.38 SS G_CDS: -0.62 Total: 48.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.11 -11.92 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619474311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.505 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds