Wall clock time and date at job start Tue Mar 31 2020 22:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48501 * 109.47099 * 275.41026 * 3 2 1 5 5 H 1.48498 * 109.47454 * 35.41421 * 3 2 1 6 6 H 1.48508 * 109.47093 * 155.41159 * 3 2 1 7 7 C 1.39947 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99583 * 341.74080 * 7 2 1 9 9 C 1.41397 * 120.00466 * 161.73423 * 7 2 1 10 10 C 1.40730 * 120.24255 * 330.21488 * 9 7 2 11 11 C 1.37595 * 119.74566 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24695 * 359.71626 * 11 10 9 13 13 C 1.38613 * 120.50086 * 0.55673 * 12 11 10 14 14 S 1.76201 * 119.87541 * 179.71723 * 13 12 11 15 15 O 1.42094 * 106.40077 * 23.27529 * 14 13 12 16 16 O 1.42105 * 106.39898 * 156.18868 * 14 13 12 17 17 N 1.65600 * 107.21832 * 269.72919 * 14 13 12 18 18 C 1.46494 * 119.99883 * 65.00586 * 17 14 13 19 19 C 1.52999 * 109.47351 * 164.99756 * 18 17 14 20 20 H 1.09007 * 109.46852 * 304.99859 * 19 18 17 21 21 C 1.53005 * 109.47128 * 64.99419 * 19 18 17 22 22 C 1.52999 * 109.47128 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47471 * 300.00496 * 22 21 19 24 24 C 1.53005 * 109.47349 * 59.99640 * 23 22 21 25 25 H 1.09002 * 109.46443 * 60.00166 * 24 23 22 26 26 O 1.42898 * 109.47106 * 180.02562 * 24 23 22 27 27 C 1.52996 * 109.47471 * 184.99915 * 19 18 17 28 28 C 1.37638 * 120.24499 * 359.44898 * 13 12 11 29 29 H 0.96999 * 120.00609 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.12785 * 0.03648 * 10 9 7 31 31 H 1.07996 * 119.87591 * 180.02562 * 11 10 9 32 32 H 1.07999 * 119.74886 * 180.30213 * 12 11 10 33 33 H 0.97004 * 119.99774 * 244.99850 * 17 14 13 34 34 H 1.09002 * 109.47211 * 284.99559 * 18 17 14 35 35 H 1.09000 * 109.47345 * 44.99405 * 18 17 14 36 36 H 1.08995 * 109.47254 * 300.00649 * 21 19 18 37 37 H 1.09002 * 109.46443 * 60.00405 * 21 19 18 38 38 H 1.09007 * 109.46852 * 60.00440 * 22 21 19 39 39 H 1.08996 * 109.47260 * 179.97438 * 22 21 19 40 40 H 1.09003 * 109.47506 * 180.02562 * 23 22 21 41 41 H 1.09007 * 109.47037 * 299.99831 * 23 22 21 42 42 H 0.96696 * 113.99839 * 299.99762 * 26 24 23 43 43 H 1.09007 * 109.47037 * 299.99831 * 27 19 18 44 44 H 1.08996 * 109.47308 * 59.99503 * 27 19 18 45 45 H 1.08008 * 120.12361 * 180.24785 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3752 2.1125 -1.3938 5 1 1.5014 2.6170 0.8113 6 1 3.5922 1.4100 0.5826 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1238 0.2921 9 6 3.3686 -1.2426 -0.3843 10 6 3.8636 -0.3104 -1.3152 11 6 5.1892 -0.3499 -1.6818 12 6 6.0376 -1.2996 -1.1333 13 6 5.5597 -2.2262 -0.2199 14 16 6.6507 -3.4306 0.4612 15 8 7.9617 -2.8949 0.3461 16 8 6.0814 -3.8329 1.6995 17 7 6.5982 -4.7559 -0.5303 18 6 7.0872 -4.6600 -1.9078 19 6 7.2794 -6.0659 -2.4800 20 1 7.9359 -6.6383 -1.8245 21 6 5.9224 -6.7657 -2.5799 22 6 6.1146 -8.1718 -3.1515 23 6 6.7424 -8.0753 -4.5433 24 6 8.0994 -7.3755 -4.4434 25 1 8.7557 -7.9476 -3.7876 26 8 8.6855 -7.2848 -5.7435 27 6 7.9069 -5.9688 -3.8719 28 6 4.2373 -2.2054 0.1613 29 1 -0.4851 0.8400 0.0004 30 1 3.2056 0.4332 -1.7400 31 1 5.5715 0.3647 -2.3956 32 1 7.0778 -1.3202 -1.4232 33 1 6.2436 -5.5958 -0.1988 34 1 6.3619 -4.1171 -2.5139 35 1 8.0395 -4.1298 -1.9192 36 1 5.4753 -6.8348 -1.5883 37 1 5.2659 -6.1932 -3.2353 38 1 6.7710 -8.7439 -2.4957 39 1 5.1480 -8.6705 -3.2223 40 1 6.8789 -9.0770 -4.9507 41 1 6.0860 -7.5031 -5.1991 42 1 8.8364 -8.1407 -6.1674 43 1 7.2504 -5.3964 -4.5273 44 1 8.8735 -5.4702 -3.8007 45 1 3.8678 -2.9258 0.8762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619486335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:43 Heat of formation + Delta-G solvation = -134.015200 kcal Electronic energy + Delta-G solvation = -27484.436233 eV Core-core repulsion = 23592.175232 eV Total energy + Delta-G solvation = -3892.261001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.53599 -37.94325 -36.85337 -36.56112 -35.40969 -34.48300 -33.80054 -31.20876 -30.74860 -30.18474 -29.58709 -25.59295 -25.36810 -22.70708 -22.40357 -21.64934 -20.92092 -20.13782 -19.20990 -18.06841 -17.53853 -16.94289 -16.34204 -16.22501 -15.65352 -15.35740 -14.93852 -14.78835 -14.71730 -14.47209 -14.07193 -13.83130 -13.31806 -13.19183 -13.03703 -12.89634 -12.72400 -12.32153 -12.22083 -11.89362 -11.71382 -11.67241 -11.59329 -11.51719 -11.48415 -11.34950 -11.06061 -10.94959 -10.81367 -10.79137 -10.44531 -10.35918 -10.04328 -10.00940 -9.80282 -9.43714 -9.17871 -8.30033 -7.90159 -7.10679 -4.66237 0.89180 1.88878 2.39436 2.97925 3.10236 3.19332 3.40846 3.83632 3.85863 4.08901 4.29915 4.35231 4.39648 4.71414 4.77713 4.86198 4.88796 5.04186 5.07447 5.14104 5.18600 5.25346 5.36550 5.52199 5.60057 5.69631 5.78025 5.80583 5.84363 5.90111 5.92167 5.96104 5.99184 6.12042 6.17987 6.24298 6.43762 6.55882 6.84324 7.02508 7.13515 7.17417 7.34675 7.36955 7.59615 7.75354 8.15917 8.40273 8.59500 9.91201 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.003054 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.721527 B = 9165.705481 C = 9729.391172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.084 3.916 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.443 4.443 8 H 0.095 0.905 9 C 0.073 3.927 10 C -0.197 4.197 11 C -0.092 4.092 12 C -0.158 4.158 13 C -0.625 4.625 14 S 2.691 3.309 15 O -0.972 6.972 16 O -0.969 6.969 17 N -1.120 6.120 18 C 0.123 3.877 19 C -0.089 4.089 20 H 0.080 0.920 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.152 4.152 24 C 0.106 3.894 25 H 0.054 0.946 26 O -0.569 6.569 27 C -0.108 4.108 28 C -0.103 4.103 29 H 0.288 0.712 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.413 0.587 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.376 0.624 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.574 -13.486 -8.253 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.472 4.472 8 H 0.113 0.887 9 C 0.069 3.931 10 C -0.217 4.217 11 C -0.112 4.112 12 C -0.179 4.179 13 C -0.716 4.716 14 S 2.785 3.215 15 O -0.962 6.962 16 O -0.960 6.960 17 N -0.879 5.879 18 C -0.003 4.003 19 C -0.109 4.109 20 H 0.099 0.901 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.190 4.190 24 C 0.048 3.952 25 H 0.072 0.928 26 O -0.374 6.374 27 C -0.147 4.147 28 C -0.124 4.124 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.223 0.777 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.848 -12.515 -7.391 18.752 hybrid contribution -0.637 0.141 -0.553 0.856 sum 11.211 -12.374 -7.944 18.491 Atomic orbital electron populations 1.69670 1.08064 1.30546 1.34074 1.26155 0.94771 1.01731 0.90932 0.86381 0.81536 0.79868 0.79041 1.19410 1.21311 1.16620 1.19516 0.92880 0.96415 1.38340 0.88689 1.17788 0.93236 0.91514 0.90536 1.21310 0.95746 1.03187 1.01440 1.20708 0.93840 0.97681 0.98925 1.20075 0.98365 0.98433 1.01033 1.29944 1.10281 1.17267 1.14092 1.01665 0.74042 0.73003 0.72762 1.93519 1.37255 1.78930 1.86486 1.93557 1.79579 1.82288 1.40540 1.55562 1.79837 1.27733 1.24750 1.21288 1.00050 0.97390 0.81581 1.21286 0.97484 0.95945 0.96176 0.90141 1.21684 0.96741 0.95639 1.01862 1.21475 1.00934 0.97322 0.95714 1.22287 0.97806 1.00603 0.98308 1.21802 0.92558 0.96867 0.84023 0.92781 1.86529 1.84068 1.34868 1.31937 1.21480 1.02044 0.95733 0.95407 1.20840 0.90560 1.01628 0.99327 0.90165 0.87623 0.87891 0.87029 0.75219 0.91025 0.90131 0.91206 0.91035 0.91883 0.91497 0.91998 0.90958 0.77731 0.90571 0.90736 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 13.93 55.55 0.77 -19.83 16 2 C 0.08 2.13 5.40 -17.34 -0.09 2.04 16 3 Si 0.91 20.09 24.52 -169.99 -4.17 15.92 16 4 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.24 -5.58 6.86 56.52 0.39 -5.20 16 7 C -0.44 -11.56 9.57 -37.74 -0.36 -11.93 16 8 H 0.10 2.57 8.06 -52.48 -0.42 2.14 16 9 C 0.07 1.79 5.10 -106.83 -0.55 1.25 16 10 C -0.20 -4.54 7.18 -38.88 -0.28 -4.82 16 11 C -0.09 -1.90 10.02 -39.66 -0.40 -2.30 16 12 C -0.16 -3.15 9.53 -39.29 -0.37 -3.52 16 13 C -0.62 -12.66 5.94 -39.66 -0.24 -12.90 16 14 S 2.69 46.83 5.74 -107.50 -0.62 46.21 16 15 O -0.97 -18.60 16.73 -57.17 -0.96 -19.56 16 16 O -0.97 -19.29 17.27 -57.17 -0.99 -20.28 16 17 N -1.12 -14.34 5.88 -10.62 -0.06 -14.40 16 18 C 0.12 1.40 5.61 -4.05 -0.02 1.38 16 19 C -0.09 -0.80 2.29 -90.62 -0.21 -1.00 16 20 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 21 C -0.12 -1.05 5.08 -26.73 -0.14 -1.18 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 23 C -0.15 -1.08 5.54 -26.73 -0.15 -1.23 16 24 C 0.11 0.84 3.47 -26.70 -0.09 0.75 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 O -0.57 -4.89 13.32 -35.23 -0.47 -5.36 16 27 C -0.11 -0.98 4.86 -26.71 -0.13 -1.11 16 28 C -0.10 -2.32 9.26 -38.87 -0.36 -2.68 16 29 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 30 H 0.11 2.39 4.73 -52.49 -0.25 2.15 16 31 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.11 1.97 7.59 -52.49 -0.40 1.58 16 33 H 0.41 4.38 7.41 -34.47 -0.26 4.12 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 36 H 0.07 0.59 6.90 -51.93 -0.36 0.23 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.38 1.63 9.08 45.56 0.41 2.05 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.12 2.59 7.60 -52.48 -0.40 2.19 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -31.57 369.73 -10.35 -41.92 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.89 Total: 8.06 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: -3.54 Total: -38.25 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.71 Total: -34.23 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -2.41 Total: -45.20 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.17 Total: 15.92 kcal Atomic # 16 Polarization: 46.83 SS G_CDS: -0.62 Total: 46.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.57 -10.35 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.095 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds