Wall clock time and date at job start Tue Mar 31 2020 22:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48501 * 109.47099 * 275.41026 * 3 2 1 5 5 H 1.48498 * 109.47454 * 35.41421 * 3 2 1 6 6 H 1.48508 * 109.47093 * 155.41159 * 3 2 1 7 7 C 1.39947 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99583 * 341.74080 * 7 2 1 9 9 C 1.41397 * 120.00466 * 161.73423 * 7 2 1 10 10 C 1.40730 * 120.24255 * 330.21488 * 9 7 2 11 11 C 1.37595 * 119.74566 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24695 * 359.71626 * 11 10 9 13 13 C 1.38613 * 120.50086 * 0.55673 * 12 11 10 14 14 S 1.76201 * 119.87541 * 179.71723 * 13 12 11 15 15 O 1.42094 * 106.40077 * 23.27529 * 14 13 12 16 16 O 1.42105 * 106.39898 * 156.18868 * 14 13 12 17 17 N 1.65600 * 107.21832 * 269.72919 * 14 13 12 18 18 C 1.46494 * 119.99883 * 65.00586 * 17 14 13 19 19 C 1.52999 * 109.47351 * 164.99756 * 18 17 14 20 20 H 1.09007 * 109.46852 * 304.99859 * 19 18 17 21 21 C 1.53005 * 109.47128 * 64.99419 * 19 18 17 22 22 C 1.52999 * 109.47128 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47471 * 300.00496 * 22 21 19 24 24 C 1.53005 * 109.47349 * 59.99640 * 23 22 21 25 25 H 1.09002 * 109.46443 * 60.00166 * 24 23 22 26 26 O 1.42898 * 109.47106 * 180.02562 * 24 23 22 27 27 C 1.52996 * 109.47471 * 184.99915 * 19 18 17 28 28 C 1.37638 * 120.24499 * 359.44898 * 13 12 11 29 29 H 0.96999 * 120.00609 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.12785 * 0.03648 * 10 9 7 31 31 H 1.07996 * 119.87591 * 180.02562 * 11 10 9 32 32 H 1.07999 * 119.74886 * 180.30213 * 12 11 10 33 33 H 0.97004 * 119.99774 * 244.99850 * 17 14 13 34 34 H 1.09002 * 109.47211 * 284.99559 * 18 17 14 35 35 H 1.09000 * 109.47345 * 44.99405 * 18 17 14 36 36 H 1.08995 * 109.47254 * 300.00649 * 21 19 18 37 37 H 1.09002 * 109.46443 * 60.00405 * 21 19 18 38 38 H 1.09007 * 109.46852 * 60.00440 * 22 21 19 39 39 H 1.08996 * 109.47260 * 179.97438 * 22 21 19 40 40 H 1.09003 * 109.47506 * 180.02562 * 23 22 21 41 41 H 1.09007 * 109.47037 * 299.99831 * 23 22 21 42 42 H 0.96696 * 113.99839 * 299.99762 * 26 24 23 43 43 H 1.09007 * 109.47037 * 299.99831 * 27 19 18 44 44 H 1.08996 * 109.47308 * 59.99503 * 27 19 18 45 45 H 1.08008 * 120.12361 * 180.24785 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3752 2.1125 -1.3938 5 1 1.5014 2.6170 0.8113 6 1 3.5922 1.4100 0.5826 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1238 0.2921 9 6 3.3686 -1.2426 -0.3843 10 6 3.8636 -0.3104 -1.3152 11 6 5.1892 -0.3499 -1.6818 12 6 6.0376 -1.2996 -1.1333 13 6 5.5597 -2.2262 -0.2199 14 16 6.6507 -3.4306 0.4612 15 8 7.9617 -2.8949 0.3461 16 8 6.0814 -3.8329 1.6995 17 7 6.5982 -4.7559 -0.5303 18 6 7.0872 -4.6600 -1.9078 19 6 7.2794 -6.0659 -2.4800 20 1 7.9359 -6.6383 -1.8245 21 6 5.9224 -6.7657 -2.5799 22 6 6.1146 -8.1718 -3.1515 23 6 6.7424 -8.0753 -4.5433 24 6 8.0994 -7.3755 -4.4434 25 1 8.7557 -7.9476 -3.7876 26 8 8.6855 -7.2848 -5.7435 27 6 7.9069 -5.9688 -3.8719 28 6 4.2373 -2.2054 0.1613 29 1 -0.4851 0.8400 0.0004 30 1 3.2056 0.4332 -1.7400 31 1 5.5715 0.3647 -2.3956 32 1 7.0778 -1.3202 -1.4232 33 1 6.2436 -5.5958 -0.1988 34 1 6.3619 -4.1171 -2.5139 35 1 8.0395 -4.1298 -1.9192 36 1 5.4753 -6.8348 -1.5883 37 1 5.2659 -6.1932 -3.2353 38 1 6.7710 -8.7439 -2.4957 39 1 5.1480 -8.6705 -3.2223 40 1 6.8789 -9.0770 -4.9507 41 1 6.0860 -7.5031 -5.1991 42 1 8.8364 -8.1407 -6.1674 43 1 7.2504 -5.3964 -4.5273 44 1 8.8735 -5.4702 -3.8007 45 1 3.8678 -2.9258 0.8762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619486335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:42 Heat of formation + Delta-G solvation = -157.866200 kcal Electronic energy + Delta-G solvation = -27485.470490 eV Core-core repulsion = 23592.175232 eV Total energy + Delta-G solvation = -3893.295258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.20743 -39.68875 -38.30007 -37.38255 -36.92852 -35.65038 -35.32874 -32.54768 -31.96652 -31.88647 -30.26115 -27.25977 -26.39987 -24.11013 -23.32924 -22.71356 -22.34022 -20.87657 -20.58885 -19.67763 -18.59637 -18.08433 -17.88517 -17.38196 -17.03475 -16.65694 -16.37010 -16.04143 -15.52733 -15.37492 -15.35904 -14.86018 -14.74594 -14.68466 -14.16178 -14.00087 -13.94230 -13.58287 -13.45980 -13.37788 -13.21685 -13.09348 -12.98885 -12.88817 -12.59291 -12.54702 -12.28398 -12.07595 -11.97047 -11.79658 -11.63031 -11.55159 -11.45709 -11.10188 -11.06342 -10.61883 -10.43069 -10.00829 -9.69460 -8.98025 -6.60464 -0.53901 0.17806 0.64201 1.19760 1.34783 1.41856 2.02315 2.08923 2.41014 2.75348 3.23234 3.29507 3.46982 3.68804 3.74416 4.08274 4.15010 4.17593 4.18481 4.31117 4.33019 4.42658 4.43717 4.52925 4.59491 4.67547 4.70541 4.75477 4.79608 4.82911 4.97988 5.06122 5.11247 5.19233 5.22579 5.28114 5.30525 5.33430 5.40320 5.43025 5.56401 5.62348 5.75442 5.98206 6.11485 6.23419 6.57209 6.68838 6.94912 8.10217 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.003054 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.721527 B = 9165.705481 C = 9729.391172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.050 3.950 3 Si 0.955 3.045 4 H -0.248 1.248 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.483 4.483 8 H 0.062 0.938 9 C 0.054 3.946 10 C -0.205 4.205 11 C -0.096 4.096 12 C -0.142 4.142 13 C -0.633 4.633 14 S 2.720 3.280 15 O -0.981 6.981 16 O -0.995 6.995 17 N -1.102 6.102 18 C 0.114 3.886 19 C -0.079 4.079 20 H 0.095 0.905 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.148 4.148 24 C 0.107 3.893 25 H 0.067 0.933 26 O -0.588 6.588 27 C -0.110 4.110 28 C -0.122 4.122 29 H 0.296 0.704 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.426 0.574 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.393 0.607 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.504 -13.910 -9.533 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.166 4.166 3 Si 0.778 3.222 4 H -0.173 1.173 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.513 4.513 8 H 0.080 0.920 9 C 0.051 3.949 10 C -0.225 4.225 11 C -0.115 4.115 12 C -0.162 4.162 13 C -0.721 4.721 14 S 2.811 3.189 15 O -0.971 6.971 16 O -0.985 6.985 17 N -0.866 5.866 18 C -0.012 4.012 19 C -0.099 4.099 20 H 0.113 0.887 21 C -0.163 4.163 22 C -0.152 4.152 23 C -0.186 4.186 24 C 0.049 3.951 25 H 0.085 0.915 26 O -0.397 6.397 27 C -0.148 4.148 28 C -0.143 4.143 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.263 0.737 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.243 0.757 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 14.753 -12.937 -8.691 21.460 hybrid contribution -1.313 0.108 -0.249 1.341 sum 13.440 -12.828 -8.940 20.618 Atomic orbital electron populations 1.69694 1.09075 1.31693 1.36249 1.26780 0.95358 1.04028 0.90430 0.85639 0.79652 0.76850 0.80068 1.17303 1.20045 1.17993 1.19486 0.94244 0.95998 1.41542 0.91983 1.17942 0.92875 0.92818 0.91259 1.21502 0.97113 1.02773 1.01064 1.21168 0.92781 0.98350 0.99186 1.20625 0.99771 0.96784 0.99048 1.30461 1.09756 1.18328 1.13536 1.00828 0.72965 0.72860 0.72246 1.93506 1.37197 1.79700 1.86720 1.93523 1.79905 1.82557 1.42499 1.55187 1.79572 1.26692 1.25133 1.21533 1.00058 0.99260 0.80338 1.21211 0.97913 0.94477 0.96317 0.88720 1.21717 0.96332 0.96528 1.01741 1.21460 1.01441 0.96357 0.95905 1.22246 0.97075 1.01245 0.98016 1.21792 0.93139 0.96139 0.84076 0.91509 1.86481 1.84150 1.36717 1.32323 1.21477 1.01603 0.96631 0.95133 1.20884 0.91665 1.01732 0.99982 0.89322 0.87414 0.83942 0.83885 0.73654 0.91398 0.89628 0.91173 0.92321 0.90639 0.91253 0.90293 0.92347 0.75693 0.91742 0.90883 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.15 13.93 21.83 0.30 -44.85 16 2 C 0.05 2.61 5.40 85.26 0.46 3.07 16 3 Si 0.96 41.41 24.52 68.60 1.68 43.09 16 4 H -0.25 -9.86 6.71 99.48 0.67 -9.20 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.26 -11.50 6.86 99.48 0.68 -10.82 16 7 C -0.48 -26.65 9.57 23.46 0.22 -26.42 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 9 C 0.05 2.73 5.10 -21.29 -0.11 2.62 16 10 C -0.21 -9.24 7.18 22.73 0.16 -9.07 16 11 C -0.10 -3.67 10.02 22.22 0.22 -3.44 16 12 C -0.14 -5.22 9.53 22.46 0.21 -5.00 16 13 C -0.63 -24.79 5.94 22.22 0.13 -24.66 16 14 S 2.72 89.86 5.74 -56.49 -0.32 89.53 16 15 O -0.98 -34.83 16.73 -128.00 -2.14 -36.97 16 16 O -0.99 -38.76 17.27 -128.00 -2.21 -40.97 16 17 N -1.10 -25.98 5.88 -187.50 -1.10 -27.08 16 18 C 0.11 2.32 5.61 86.38 0.48 2.81 16 19 C -0.08 -1.23 2.29 -10.79 -0.02 -1.26 16 20 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 21 C -0.13 -1.95 5.08 30.60 0.16 -1.80 16 22 C -0.11 -1.39 5.92 30.59 0.18 -1.20 16 23 C -0.15 -1.78 5.54 30.59 0.17 -1.61 16 24 C 0.11 1.44 3.47 30.61 0.11 1.55 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 O -0.59 -8.88 13.32 -148.98 -1.98 -10.87 16 27 C -0.11 -1.77 4.86 30.61 0.15 -1.62 16 28 C -0.12 -5.60 9.26 22.73 0.21 -5.38 16 29 H 0.30 14.21 8.30 -92.71 -0.77 13.44 16 30 H 0.11 4.76 4.73 -2.91 -0.01 4.74 16 31 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.14 4.40 7.59 -2.91 -0.02 4.38 16 33 H 0.43 8.16 7.41 -96.74 -0.72 7.44 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.70 7.75 -2.39 -0.02 1.69 16 36 H 0.07 1.07 6.90 -2.39 -0.02 1.06 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.39 2.51 9.08 -74.06 -0.67 1.84 16 43 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 Total: -1.00 -69.08 369.73 -3.47 -72.55 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.44 Total: 26.99 kcal Atomic # 6 Polarization: -74.17 SS G_CDS: 2.74 Total: -71.43 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -0.80 Total: -71.93 kcal Atomic # 8 Polarization: -82.48 SS G_CDS: -6.34 Total: -88.81 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.68 Total: 43.09 kcal Atomic # 16 Polarization: 89.86 SS G_CDS: -0.32 Total: 89.53 kcal Total: -69.08 -3.47 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.314 kcal (2) G-P(sol) polarization free energy of solvation -69.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds