Wall clock time and date at job start Tue Mar 31 2020 22:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86795 * 119.99833 * 2 1 4 4 H 1.48497 * 109.47532 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47250 * 120.00386 * 3 2 1 6 6 H 1.48511 * 109.46954 * 240.00022 * 3 2 1 7 7 C 1.39939 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99937 * 154.15323 * 7 2 1 9 9 C 1.41396 * 120.00228 * 334.14633 * 7 2 1 10 10 C 1.40739 * 120.24051 * 334.74036 * 9 7 2 11 11 C 1.37603 * 119.73903 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25331 * 0.02562 * 11 10 9 13 13 C 1.38612 * 120.49832 * 359.95815 * 12 11 10 14 14 S 1.76207 * 119.87356 * 180.02562 * 13 12 11 15 15 O 1.42093 * 106.39996 * 203.53796 * 14 13 12 16 16 O 1.42101 * 106.40133 * 336.45784 * 14 13 12 17 17 N 1.65602 * 107.21960 * 89.99926 * 14 13 12 18 18 C 1.46494 * 120.00011 * 64.99845 * 17 14 13 19 19 C 1.53003 * 109.47211 * 165.00272 * 18 17 14 20 20 H 1.08993 * 109.47352 * 54.99467 * 19 18 17 21 21 C 1.53002 * 109.46762 * 295.00038 * 19 18 17 22 22 C 1.53004 * 109.47392 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.46780 * 59.99551 * 22 21 19 24 24 C 1.52998 * 109.47342 * 300.00684 * 23 22 21 25 25 H 1.09003 * 109.46726 * 179.97438 * 24 23 22 26 26 O 1.42900 * 109.46903 * 299.99637 * 24 23 22 27 27 C 1.52993 * 109.47415 * 175.00202 * 19 18 17 28 28 C 1.37641 * 120.25316 * 359.75828 * 13 12 11 29 29 H 0.96996 * 120.00187 * 174.32641 * 1 2 3 30 30 H 1.07991 * 120.13232 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.86719 * 180.02562 * 11 10 9 32 32 H 1.07995 * 119.75270 * 179.97438 * 12 11 10 33 33 H 0.96997 * 119.99941 * 244.99919 * 17 14 13 34 34 H 1.09002 * 109.47397 * 285.00242 * 18 17 14 35 35 H 1.09004 * 109.47314 * 44.99845 * 18 17 14 36 36 H 1.09004 * 109.47173 * 299.99994 * 21 19 18 37 37 H 1.09001 * 109.47415 * 59.99882 * 21 19 18 38 38 H 1.08998 * 109.47020 * 300.00624 * 22 21 19 39 39 H 1.08990 * 109.47465 * 179.97438 * 22 21 19 40 40 H 1.09005 * 109.46891 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.46776 * 60.00464 * 23 22 21 42 42 H 0.96706 * 114.00335 * 300.00299 * 26 24 23 43 43 H 1.08995 * 109.47140 * 299.99964 * 27 19 18 44 44 H 1.08999 * 109.47511 * 59.99798 * 27 19 18 45 45 H 1.07997 * 120.13159 * 180.27777 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0961 1.6964 1.2125 6 1 3.0960 1.6964 -1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0069 -1.2586 -0.4083 9 6 1.4071 -2.3754 0.5329 10 6 0.3972 -2.2685 1.5073 11 6 -0.1801 -3.4076 2.0198 12 6 0.2299 -4.6571 1.5802 13 6 1.2233 -4.7742 0.6207 14 16 1.7312 -6.3702 0.0735 15 8 3.0501 -6.2197 -0.4335 16 8 1.3980 -7.2767 1.1159 17 7 0.7766 -6.7722 -1.2186 18 6 0.8568 -5.9956 -2.4582 19 6 0.1800 -6.7709 -3.5904 20 1 -0.8401 -7.0217 -3.2999 21 6 0.9622 -8.0564 -3.8668 22 6 0.2852 -8.8321 -4.9986 23 6 0.2577 -7.9700 -6.2624 24 6 -0.5244 -6.6845 -5.9859 25 1 -0.5436 -6.0702 -6.8862 26 8 -1.8618 -7.0133 -5.6045 27 6 0.1531 -5.9087 -4.8540 28 6 1.8108 -3.6483 0.0898 29 1 -0.4850 -0.8359 -0.0830 30 1 0.0766 -1.2964 1.8514 31 1 -0.9556 -3.3280 2.7674 32 1 -0.2285 -5.5457 1.9883 33 1 0.1644 -7.5218 -1.1547 34 1 0.3527 -5.0390 -2.3209 35 1 1.9027 -5.8220 -2.7112 36 1 1.9825 -7.8056 -4.1573 37 1 0.9815 -8.6708 -2.9666 38 1 -0.7349 -9.0829 -4.7077 39 1 0.8427 -9.7477 -5.1958 40 1 -0.2242 -8.5228 -7.0688 41 1 1.2778 -7.7192 -6.5533 42 1 -2.3523 -7.5070 -6.2760 43 1 -0.4041 -4.9928 -4.6571 44 1 1.1733 -5.6579 -5.1446 45 1 2.5815 -3.7417 -0.6609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619486336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:46 Heat of formation + Delta-G solvation = -140.617323 kcal Electronic energy + Delta-G solvation = -27726.819796 eV Core-core repulsion = 23834.272506 eV Total energy + Delta-G solvation = -3892.547290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.55291 -37.86508 -36.74754 -36.25154 -35.33992 -34.17548 -34.06640 -31.09297 -30.08788 -29.80714 -29.66602 -25.44062 -25.28459 -22.68988 -21.92307 -21.54116 -21.17710 -20.02376 -19.10197 -18.27868 -17.25684 -16.83803 -16.31851 -16.06062 -15.56451 -15.10955 -14.87859 -14.61569 -14.50247 -14.21370 -13.95954 -13.86781 -13.41569 -12.94066 -12.70500 -12.62635 -12.57381 -12.40627 -12.16914 -11.75928 -11.60776 -11.57240 -11.52244 -11.46257 -11.27210 -11.18283 -11.10363 -10.96902 -10.69995 -10.58248 -10.48094 -10.20744 -9.88366 -9.78272 -9.69043 -9.24644 -9.07077 -8.24629 -7.88123 -7.35038 -4.62256 0.99068 2.03857 2.58352 3.08717 3.15280 3.29431 3.54561 3.91638 4.04376 4.18102 4.37850 4.45621 4.50068 4.66339 4.90477 4.94122 5.06511 5.09792 5.21015 5.25413 5.30879 5.38294 5.56618 5.59591 5.71296 5.73684 5.83103 5.91275 5.97427 6.01846 6.04907 6.10560 6.12258 6.23882 6.43218 6.45880 6.56047 6.74771 7.02959 7.20313 7.26941 7.44673 7.47491 7.55478 7.63547 7.89722 8.01584 8.51388 8.67013 9.89473 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010963 B = 0.003540 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.443353 B = 7907.952163 C = 9458.531337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.039 3.961 3 Si 1.065 2.935 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.079 3.921 10 C -0.177 4.177 11 C -0.100 4.100 12 C -0.163 4.163 13 C -0.621 4.621 14 S 2.690 3.310 15 O -0.971 6.971 16 O -0.976 6.976 17 N -1.119 6.119 18 C 0.121 3.879 19 C -0.086 4.086 20 H 0.086 0.914 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.153 4.153 24 C 0.106 3.894 25 H 0.054 0.946 26 O -0.562 6.562 27 C -0.109 4.109 28 C -0.126 4.126 29 H 0.298 0.702 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.412 0.588 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.373 0.627 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 -11.237 -12.123 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.183 4.183 3 Si 0.888 3.112 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.075 3.925 10 C -0.197 4.197 11 C -0.119 4.119 12 C -0.184 4.184 13 C -0.712 4.712 14 S 2.786 3.214 15 O -0.961 6.961 16 O -0.967 6.967 17 N -0.877 5.877 18 C -0.006 4.006 19 C -0.106 4.106 20 H 0.105 0.895 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.190 4.190 24 C 0.047 3.953 25 H 0.072 0.928 26 O -0.367 6.367 27 C -0.147 4.147 28 C -0.147 4.147 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.246 0.754 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.219 0.781 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.620 -9.652 -11.205 14.877 hybrid contribution -0.710 -1.619 -0.519 1.842 sum -2.329 -11.271 -11.724 16.429 Atomic orbital electron populations 1.70491 1.08223 1.34185 1.28674 1.27075 0.95614 1.04435 0.91134 0.83629 0.75693 0.73631 0.78217 1.19765 1.19861 1.19931 1.20605 1.03503 0.93976 1.36637 0.90116 1.17734 0.91548 0.92510 0.90723 1.21439 1.01781 0.97388 0.99088 1.20734 0.99035 0.92963 0.99171 1.20017 0.99912 0.97073 1.01354 1.29863 1.10960 1.19051 1.11322 1.01628 0.73314 0.74360 0.72143 1.93525 1.35475 1.87205 1.79945 1.93522 1.84596 1.63512 1.55045 1.55502 1.60578 1.43933 1.27684 1.21358 1.01722 0.94358 0.83115 1.21240 1.00524 0.94986 0.93838 0.89538 1.21626 0.99196 0.96208 0.98445 1.21441 1.01369 0.97719 0.94707 1.22265 1.01375 0.97208 0.98190 1.21773 0.82201 0.94468 0.96810 0.92809 1.86566 1.25326 1.78071 1.46702 1.21576 1.00732 0.98499 0.93931 1.20779 1.01558 0.91612 1.00789 0.88813 0.87049 0.88223 0.87429 0.75400 0.91182 0.90379 0.91713 0.91596 0.91400 0.92278 0.92058 0.91000 0.78075 0.90611 0.90181 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.11 12.32 55.55 0.68 -19.43 16 2 C 0.04 0.96 4.93 -17.34 -0.09 0.88 16 3 Si 1.07 20.74 30.00 -169.99 -5.10 15.64 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.52 -13.27 8.98 -37.74 -0.34 -13.61 16 8 H 0.08 2.01 7.96 -52.49 -0.42 1.59 16 9 C 0.08 2.01 5.30 -106.82 -0.57 1.45 16 10 C -0.18 -4.36 7.96 -38.87 -0.31 -4.67 16 11 C -0.10 -2.23 10.02 -39.66 -0.40 -2.63 16 12 C -0.16 -3.56 9.53 -39.29 -0.37 -3.93 16 13 C -0.62 -13.53 5.94 -39.66 -0.24 -13.77 16 14 S 2.69 50.40 5.73 -107.50 -0.62 49.78 16 15 O -0.97 -20.33 16.74 -57.17 -0.96 -21.28 16 16 O -0.98 -19.98 17.27 -57.17 -0.99 -20.96 16 17 N -1.12 -16.17 5.53 -10.61 -0.06 -16.23 16 18 C 0.12 1.65 5.61 -4.04 -0.02 1.63 16 19 C -0.09 -0.96 2.07 -90.62 -0.19 -1.15 16 20 H 0.09 1.02 7.68 -51.93 -0.40 0.63 16 21 C -0.12 -1.18 5.09 -26.73 -0.14 -1.32 16 22 C -0.11 -0.97 5.78 -26.73 -0.15 -1.12 16 23 C -0.15 -1.13 5.64 -26.73 -0.15 -1.28 16 24 C 0.11 0.91 3.77 -26.71 -0.10 0.81 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 O -0.56 -5.16 11.97 -35.23 -0.42 -5.58 16 27 C -0.11 -1.12 4.95 -26.71 -0.13 -1.25 16 28 C -0.13 -3.00 9.26 -38.87 -0.36 -3.36 16 29 H 0.30 7.72 6.71 -40.82 -0.27 7.45 16 30 H 0.11 2.79 6.49 -52.49 -0.34 2.45 16 31 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 32 H 0.11 2.14 7.60 -52.49 -0.40 1.74 16 33 H 0.41 4.98 8.37 -34.47 -0.29 4.69 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.08 7.75 -51.93 -0.40 0.68 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.68 7.54 -51.93 -0.39 0.28 16 38 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.37 1.92 9.08 45.56 0.41 2.34 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.11 2.56 7.61 -52.49 -0.40 2.16 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -31.44 373.38 -11.28 -42.72 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -5.90 Total: 13.06 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: -3.55 Total: -43.33 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.63 Total: -35.66 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -2.37 Total: -47.83 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.10 Total: 15.64 kcal Atomic # 16 Polarization: 50.40 SS G_CDS: -0.62 Total: 49.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.44 -11.28 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.902 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds