Wall clock time and date at job start Tue Mar 31 2020 22:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86795 * 119.99833 * 2 1 4 4 H 1.48497 * 109.47532 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47250 * 120.00386 * 3 2 1 6 6 H 1.48511 * 109.46954 * 240.00022 * 3 2 1 7 7 C 1.39939 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99937 * 154.15323 * 7 2 1 9 9 C 1.41396 * 120.00228 * 334.14633 * 7 2 1 10 10 C 1.40739 * 120.24051 * 334.74036 * 9 7 2 11 11 C 1.37603 * 119.73903 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25331 * 0.02562 * 11 10 9 13 13 C 1.38612 * 120.49832 * 359.95815 * 12 11 10 14 14 S 1.76207 * 119.87356 * 180.02562 * 13 12 11 15 15 O 1.42093 * 106.39996 * 203.53796 * 14 13 12 16 16 O 1.42101 * 106.40133 * 336.45784 * 14 13 12 17 17 N 1.65602 * 107.21960 * 89.99926 * 14 13 12 18 18 C 1.46494 * 120.00011 * 64.99845 * 17 14 13 19 19 C 1.53003 * 109.47211 * 165.00272 * 18 17 14 20 20 H 1.08993 * 109.47352 * 54.99467 * 19 18 17 21 21 C 1.53002 * 109.46762 * 295.00038 * 19 18 17 22 22 C 1.53004 * 109.47392 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.46780 * 59.99551 * 22 21 19 24 24 C 1.52998 * 109.47342 * 300.00684 * 23 22 21 25 25 H 1.09003 * 109.46726 * 179.97438 * 24 23 22 26 26 O 1.42900 * 109.46903 * 299.99637 * 24 23 22 27 27 C 1.52993 * 109.47415 * 175.00202 * 19 18 17 28 28 C 1.37641 * 120.25316 * 359.75828 * 13 12 11 29 29 H 0.96996 * 120.00187 * 174.32641 * 1 2 3 30 30 H 1.07991 * 120.13232 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.86719 * 180.02562 * 11 10 9 32 32 H 1.07995 * 119.75270 * 179.97438 * 12 11 10 33 33 H 0.96997 * 119.99941 * 244.99919 * 17 14 13 34 34 H 1.09002 * 109.47397 * 285.00242 * 18 17 14 35 35 H 1.09004 * 109.47314 * 44.99845 * 18 17 14 36 36 H 1.09004 * 109.47173 * 299.99994 * 21 19 18 37 37 H 1.09001 * 109.47415 * 59.99882 * 21 19 18 38 38 H 1.08998 * 109.47020 * 300.00624 * 22 21 19 39 39 H 1.08990 * 109.47465 * 179.97438 * 22 21 19 40 40 H 1.09005 * 109.46891 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.46776 * 60.00464 * 23 22 21 42 42 H 0.96706 * 114.00335 * 300.00299 * 26 24 23 43 43 H 1.08995 * 109.47140 * 299.99964 * 27 19 18 44 44 H 1.08999 * 109.47511 * 59.99798 * 27 19 18 45 45 H 1.07997 * 120.13159 * 180.27777 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0961 1.6964 1.2125 6 1 3.0960 1.6964 -1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0069 -1.2586 -0.4083 9 6 1.4071 -2.3754 0.5329 10 6 0.3972 -2.2685 1.5073 11 6 -0.1801 -3.4076 2.0198 12 6 0.2299 -4.6571 1.5802 13 6 1.2233 -4.7742 0.6207 14 16 1.7312 -6.3702 0.0735 15 8 3.0501 -6.2197 -0.4335 16 8 1.3980 -7.2767 1.1159 17 7 0.7766 -6.7722 -1.2186 18 6 0.8568 -5.9956 -2.4582 19 6 0.1800 -6.7709 -3.5904 20 1 -0.8401 -7.0217 -3.2999 21 6 0.9622 -8.0564 -3.8668 22 6 0.2852 -8.8321 -4.9986 23 6 0.2577 -7.9700 -6.2624 24 6 -0.5244 -6.6845 -5.9859 25 1 -0.5436 -6.0702 -6.8862 26 8 -1.8618 -7.0133 -5.6045 27 6 0.1531 -5.9087 -4.8540 28 6 1.8108 -3.6483 0.0898 29 1 -0.4850 -0.8359 -0.0830 30 1 0.0766 -1.2964 1.8514 31 1 -0.9556 -3.3280 2.7674 32 1 -0.2285 -5.5457 1.9883 33 1 0.1644 -7.5218 -1.1547 34 1 0.3527 -5.0390 -2.3209 35 1 1.9027 -5.8220 -2.7112 36 1 1.9825 -7.8056 -4.1573 37 1 0.9815 -8.6708 -2.9666 38 1 -0.7349 -9.0829 -4.7077 39 1 0.8427 -9.7477 -5.1958 40 1 -0.2242 -8.5228 -7.0688 41 1 1.2778 -7.7192 -6.5533 42 1 -2.3523 -7.5070 -6.2760 43 1 -0.4041 -4.9928 -4.6571 44 1 1.1733 -5.6579 -5.1446 45 1 2.5815 -3.7417 -0.6609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619486336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:45 Heat of formation + Delta-G solvation = -162.576186 kcal Electronic energy + Delta-G solvation = -27727.772004 eV Core-core repulsion = 23834.272506 eV Total energy + Delta-G solvation = -3893.499498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31673 -39.70465 -38.34345 -37.21631 -36.97715 -35.92961 -35.07715 -31.95193 -31.92470 -31.51820 -30.55688 -27.19888 -26.42323 -23.74512 -23.39440 -23.07366 -22.33771 -20.96627 -20.57778 -19.91511 -18.62014 -17.98297 -17.60748 -17.36967 -16.79821 -16.51473 -16.20162 -15.94235 -15.75946 -15.43194 -15.34655 -15.15713 -14.82675 -14.45091 -14.00762 -13.84437 -13.67240 -13.50883 -13.36936 -13.25305 -13.17571 -13.13225 -13.05940 -12.78762 -12.67444 -12.45580 -12.41926 -11.98493 -11.94709 -11.72184 -11.55003 -11.47803 -11.37927 -10.99980 -10.98079 -10.56127 -10.43153 -10.07919 -9.77109 -9.26634 -6.57807 -0.56848 0.21752 0.74318 1.49904 1.57962 1.79040 2.06312 2.29026 2.47922 2.71213 3.31689 3.37526 3.44158 3.66257 3.76949 3.94023 4.14123 4.17193 4.18712 4.30768 4.33922 4.44532 4.52206 4.55671 4.61565 4.65743 4.72276 4.74317 4.82831 4.89829 4.97555 5.07113 5.12756 5.17536 5.26215 5.30374 5.34620 5.40356 5.41299 5.56877 5.59257 5.68264 5.70344 6.00290 6.07589 6.13595 6.61430 6.77965 6.99067 7.95756 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010963 B = 0.003540 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.443353 B = 7907.952163 C = 9458.531337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.008 3.992 3 Si 1.115 2.885 4 H -0.269 1.269 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.194 4.194 11 C -0.103 4.103 12 C -0.162 4.162 13 C -0.629 4.629 14 S 2.721 3.279 15 O -0.990 6.990 16 O -0.987 6.987 17 N -1.100 6.100 18 C 0.116 3.884 19 C -0.076 4.076 20 H 0.081 0.919 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.148 4.148 24 C 0.108 3.892 25 H 0.066 0.934 26 O -0.581 6.581 27 C -0.115 4.115 28 C -0.142 4.142 29 H 0.285 0.715 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.427 0.573 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.390 0.610 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -12.562 -13.140 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.209 4.209 3 Si 0.931 3.069 4 H -0.194 1.194 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.049 3.951 10 C -0.214 4.214 11 C -0.122 4.122 12 C -0.182 4.182 13 C -0.717 4.717 14 S 2.813 3.187 15 O -0.980 6.980 16 O -0.978 6.978 17 N -0.862 5.862 18 C -0.010 4.010 19 C -0.096 4.096 20 H 0.099 0.901 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.186 4.186 24 C 0.049 3.951 25 H 0.084 0.916 26 O -0.389 6.389 27 C -0.154 4.154 28 C -0.163 4.163 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.239 0.761 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.816 -10.988 -12.212 16.528 hybrid contribution -0.720 -1.385 -0.199 1.573 sum -2.536 -12.373 -12.411 17.708 Atomic orbital electron populations 1.70596 1.08853 1.33239 1.30662 1.28410 0.95623 1.07282 0.89548 0.83033 0.74848 0.69795 0.79199 1.19389 1.19012 1.18029 1.20809 1.03759 0.95145 1.38398 0.90515 1.18075 0.92268 0.93423 0.91325 1.21458 1.02417 0.97779 0.99730 1.21088 0.99257 0.92481 0.99329 1.20440 0.99368 0.97808 1.00609 1.30388 1.10118 1.20398 1.10794 1.00763 0.72968 0.72778 0.72205 1.93500 1.37080 1.87114 1.80334 1.93500 1.84799 1.63103 1.56358 1.55117 1.60416 1.44098 1.26604 1.21507 1.01848 0.94220 0.83459 1.21156 0.99942 0.95410 0.93130 0.90078 1.21660 0.99170 0.95646 0.99262 1.21420 1.01071 0.98026 0.94438 1.22237 1.01615 0.96485 0.98216 1.21753 0.82091 0.95080 0.96159 0.91632 1.86520 1.25763 1.78586 1.48034 1.21638 1.01334 0.98064 0.94315 1.20854 1.02199 0.91848 1.01419 0.90312 0.88194 0.85240 0.84919 0.73621 0.92583 0.90595 0.91773 0.91813 0.91681 0.91222 0.90101 0.90605 0.76073 0.92174 0.89444 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.28 12.32 21.83 0.27 -42.01 16 2 C 0.01 0.41 4.93 85.25 0.42 0.83 16 3 Si 1.11 41.89 30.00 68.60 2.06 43.95 16 4 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 6 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.55 -29.25 8.98 23.46 0.21 -29.04 16 8 H 0.08 3.97 7.96 -2.91 -0.02 3.94 16 9 C 0.05 2.78 5.30 -21.29 -0.11 2.66 16 10 C -0.19 -9.78 7.96 22.73 0.18 -9.60 16 11 C -0.10 -4.55 10.02 22.22 0.22 -4.32 16 12 C -0.16 -6.90 9.53 22.46 0.21 -6.68 16 13 C -0.63 -27.28 5.94 22.22 0.13 -27.15 16 14 S 2.72 99.31 5.73 -56.49 -0.32 98.98 16 15 O -0.99 -40.87 16.74 -128.00 -2.14 -43.02 16 16 O -0.99 -38.60 17.27 -128.00 -2.21 -40.81 16 17 N -1.10 -30.59 5.53 -187.49 -1.04 -31.63 16 18 C 0.12 3.13 5.61 86.38 0.48 3.61 16 19 C -0.08 -1.63 2.07 -10.79 -0.02 -1.65 16 20 H 0.08 1.84 7.68 -2.39 -0.02 1.82 16 21 C -0.12 -2.22 5.09 30.60 0.16 -2.07 16 22 C -0.11 -1.62 5.78 30.60 0.18 -1.45 16 23 C -0.15 -1.79 5.64 30.59 0.17 -1.62 16 24 C 0.11 1.64 3.77 30.61 0.12 1.76 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 O -0.58 -9.66 11.97 -148.98 -1.78 -11.45 16 27 C -0.12 -2.27 4.95 30.61 0.15 -2.12 16 28 C -0.14 -6.92 9.26 22.73 0.21 -6.71 16 29 H 0.28 15.36 6.71 -92.71 -0.62 14.73 16 30 H 0.10 5.18 6.49 -2.91 -0.02 5.16 16 31 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 32 H 0.13 4.96 7.60 -2.91 -0.02 4.94 16 33 H 0.43 9.55 8.37 -96.75 -0.81 8.74 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 2.10 7.75 -2.38 -0.02 2.08 16 36 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 1.19 7.54 -2.39 -0.02 1.18 16 38 H 0.06 0.99 7.68 -2.39 -0.02 0.98 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.39 3.18 9.08 -74.05 -0.67 2.51 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.11 5.31 7.61 -2.91 -0.02 5.29 16 Total: -1.00 -67.74 373.38 -2.78 -70.52 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.32 Total: 39.00 kcal Atomic # 6 Polarization: -86.25 SS G_CDS: 2.71 Total: -83.54 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -0.77 Total: -73.64 kcal Atomic # 8 Polarization: -89.14 SS G_CDS: -6.14 Total: -95.28 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.06 Total: 43.95 kcal Atomic # 16 Polarization: 99.31 SS G_CDS: -0.32 Total: 98.98 kcal Total: -67.74 -2.78 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.056 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds