Wall clock time and date at job start Tue Mar 31 2020 22:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99912 * 2 1 4 4 H 1.48500 * 109.47137 * 239.99922 * 3 2 1 5 5 H 1.48503 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47482 * 119.99585 * 3 2 1 7 7 C 1.39948 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99947 * 162.28720 * 7 2 1 9 9 C 1.41396 * 119.99770 * 342.56774 * 7 2 1 10 10 C 1.40733 * 120.24613 * 335.29915 * 9 7 2 11 11 C 1.37592 * 119.74762 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.24741 * 0.02562 * 11 10 9 13 13 C 1.38618 * 120.50266 * 359.97438 * 12 11 10 14 14 S 1.76199 * 119.87715 * 180.02562 * 13 12 11 15 15 O 1.42106 * 106.40112 * 203.53645 * 14 13 12 16 16 O 1.42098 * 106.40161 * 336.45481 * 14 13 12 17 17 N 1.65602 * 107.21893 * 89.99649 * 14 13 12 18 18 C 1.46500 * 119.99730 * 64.99943 * 17 14 13 19 19 C 1.53010 * 109.47002 * 164.99977 * 18 17 14 20 20 C 1.52996 * 109.47148 * 180.02562 * 19 18 17 21 21 H 1.09003 * 109.48040 * 305.02132 * 20 19 18 22 22 C 1.53092 * 109.48144 * 185.00153 * 20 19 18 23 23 C 1.53174 * 109.16617 * 182.40722 * 22 20 19 24 24 C 1.53179 * 109.03567 * 56.98037 * 23 22 20 25 25 C 1.53095 * 109.16340 * 303.02075 * 24 23 22 26 26 O 1.42896 * 109.48137 * 65.05689 * 20 19 18 27 27 C 1.37644 * 120.24651 * 359.71093 * 13 12 11 28 28 H 0.96997 * 119.99983 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.12472 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.87902 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.75282 * 180.02562 * 12 11 10 32 32 H 0.97000 * 119.99962 * 244.99646 * 17 14 13 33 33 H 1.08998 * 109.47168 * 284.99747 * 18 17 14 34 34 H 1.08998 * 109.47382 * 45.00258 * 18 17 14 35 35 H 1.08998 * 109.46971 * 299.99890 * 19 18 17 36 36 H 1.08998 * 109.46823 * 59.99939 * 19 18 17 37 37 H 1.09003 * 109.52087 * 302.31668 * 22 20 19 38 38 H 1.09002 * 109.52342 * 62.43588 * 22 20 19 39 39 H 1.09001 * 109.54416 * 176.84486 * 23 22 20 40 40 H 1.08999 * 109.54050 * 297.11282 * 23 22 20 41 41 H 1.09000 * 109.52055 * 62.92140 * 24 23 22 42 42 H 1.08999 * 109.52110 * 183.11695 * 24 23 22 43 43 H 1.08996 * 109.48221 * 177.59274 * 25 24 23 44 44 H 1.08999 * 109.47887 * 297.61521 * 25 24 23 45 45 H 1.07993 * 120.12783 * 180.30992 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0497 -1.2342 -0.2840 9 6 1.3498 -2.4082 0.3679 10 6 0.2170 -2.3666 1.2020 11 6 -0.4152 -3.5370 1.5535 12 6 0.0600 -4.7542 1.0896 13 6 1.1749 -4.8071 0.2676 14 16 1.7643 -6.3628 -0.3129 15 8 3.1385 -6.1800 -0.6254 16 8 1.3005 -7.3377 0.6110 17 7 0.9961 -6.6742 -1.7465 18 6 1.2370 -5.8148 -2.9083 19 6 0.7253 -6.5100 -4.1717 20 6 0.9775 -5.6129 -5.3851 21 1 0.5271 -4.6351 -5.2141 22 6 0.3552 -6.2509 -6.6298 23 6 0.6634 -5.3777 -7.8500 24 6 2.1812 -5.2148 -7.9773 25 6 2.7330 -4.6168 -6.6804 26 8 2.3847 -5.4618 -5.5818 27 6 1.8194 -3.6484 -0.1021 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1546 -1.4196 1.5647 30 1 -1.2845 -3.5076 2.1937 31 1 -0.4427 -5.6679 1.3702 32 1 0.3866 -7.4255 -1.8169 33 1 0.7115 -4.8691 -2.7759 34 1 2.3061 -5.6261 -3.0052 35 1 1.2508 -7.4558 -4.3041 36 1 -0.3438 -6.6988 -4.0748 37 1 0.7757 -7.2456 -6.7782 38 1 -0.7242 -6.3276 -6.4989 39 1 0.2713 -5.8547 -8.7482 40 1 0.2009 -4.3988 -7.7239 41 1 2.6385 -6.1886 -8.1528 42 1 2.4075 -4.5495 -8.8104 43 1 3.8179 -4.5384 -6.7491 44 1 2.3059 -3.6258 -6.5266 45 1 2.6848 -3.6915 -0.7466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619496012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:24 Heat of formation + Delta-G solvation = -126.865568 kcal Electronic energy + Delta-G solvation = -27446.229095 eV Core-core repulsion = 23554.278125 eV Total energy + Delta-G solvation = -3891.950970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.58556 -37.62384 -36.63365 -35.75918 -35.23247 -33.83505 -33.76657 -32.40172 -30.06189 -29.77108 -28.61268 -25.47371 -24.97179 -23.48761 -21.90494 -21.55406 -20.94204 -20.41852 -19.02039 -17.92030 -16.93218 -16.59825 -16.23642 -15.91663 -15.63501 -15.26208 -14.76356 -14.73327 -14.68462 -14.27123 -14.11436 -13.76978 -13.42921 -13.33869 -12.85815 -12.56657 -12.48317 -12.09437 -11.91008 -11.66869 -11.57329 -11.52442 -11.43799 -11.34166 -11.33014 -11.22249 -11.15530 -10.98712 -10.86890 -10.79945 -10.62109 -10.34688 -9.77043 -9.62348 -9.49985 -9.34012 -9.06392 -8.02336 -7.68905 -6.91951 -4.52864 1.09414 2.21968 2.65022 2.99421 3.01880 3.09119 3.60643 3.70888 3.83113 4.28756 4.45487 4.48743 4.59872 4.65771 4.74791 5.01608 5.05437 5.08779 5.19734 5.25443 5.36214 5.41458 5.51695 5.55364 5.60526 5.71984 5.74474 5.80437 5.85781 5.97408 6.04395 6.07676 6.16040 6.20459 6.32295 6.67465 6.77069 6.86984 7.04513 7.17738 7.21894 7.30073 7.40686 7.74160 7.82089 7.95458 8.41256 8.67922 8.73025 10.03396 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008335 B = 0.003971 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.334458 B = 7050.133646 C = 9424.505455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.118 4.118 11 C -0.122 4.122 12 C -0.146 4.146 13 C -0.632 4.632 14 S 2.690 3.310 15 O -0.971 6.971 16 O -0.979 6.979 17 N -1.122 6.122 18 C 0.119 3.881 19 C -0.116 4.116 20 C 0.090 3.910 21 H 0.065 0.935 22 C -0.149 4.149 23 C -0.123 4.123 24 C -0.157 4.157 25 C 0.059 3.941 26 O -0.374 6.374 27 C -0.126 4.126 28 H 0.283 0.717 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.411 0.589 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 -7.020 -13.386 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.137 4.137 11 C -0.142 4.142 12 C -0.167 4.167 13 C -0.724 4.724 14 S 2.786 3.214 15 O -0.961 6.961 16 O -0.969 6.969 17 N -0.880 5.880 18 C -0.007 4.007 19 C -0.155 4.155 20 C 0.031 3.969 21 H 0.083 0.917 22 C -0.187 4.187 23 C -0.161 4.161 24 C -0.194 4.194 25 C -0.018 4.018 26 O -0.293 6.293 27 C -0.147 4.147 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.244 0.756 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.072 -7.355 -12.886 14.876 hybrid contribution -0.715 1.347 -0.329 1.560 sum -1.787 -6.008 -13.216 14.627 Atomic orbital electron populations 1.69771 1.07631 1.29656 1.35034 1.25919 0.94764 1.01479 0.92030 0.86313 0.80128 0.79832 0.80216 1.18827 1.20279 1.18670 1.19590 0.98278 0.90934 1.40231 0.89935 1.17674 0.91781 0.92015 0.89692 1.21644 0.97617 0.97109 0.97379 1.20811 0.99426 0.93171 1.00753 1.20083 0.96938 0.97297 1.02382 1.29772 1.09706 1.18163 1.14719 1.01611 0.73511 0.74364 0.71939 1.93531 1.31658 1.86992 1.83879 1.93514 1.82226 1.59897 1.61272 1.55540 1.63920 1.41461 1.27070 1.21255 1.02551 0.92991 0.83890 1.21786 1.01861 0.99377 0.92465 1.22080 0.82334 0.98660 0.93815 0.91716 1.22201 1.01299 1.00064 0.95138 1.21591 0.96025 1.00319 0.98163 1.22201 0.96342 1.02217 0.98666 1.22570 1.00615 0.93092 0.85491 1.87983 1.22445 1.69025 1.49832 1.20808 1.00523 0.91622 1.01786 0.90577 0.85752 0.88415 0.87621 0.75620 0.91281 0.89451 0.90350 0.89886 0.91027 0.90825 0.91634 0.91705 0.91163 0.91066 0.88817 0.92977 0.86998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.48 10.95 55.55 0.61 -18.87 16 2 C 0.08 1.82 5.15 -17.34 -0.09 1.73 16 3 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 16 8 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 9 C 0.09 2.37 5.57 -106.82 -0.60 1.77 16 10 C -0.12 -2.93 8.70 -38.88 -0.34 -3.27 16 11 C -0.12 -2.76 10.02 -39.66 -0.40 -3.16 16 12 C -0.15 -3.21 9.53 -39.29 -0.37 -3.58 16 13 C -0.63 -13.93 5.94 -39.66 -0.24 -14.16 16 14 S 2.69 51.52 5.73 -107.50 -0.62 50.90 16 15 O -0.97 -21.01 16.74 -57.17 -0.96 -21.96 16 16 O -0.98 -20.23 17.27 -57.17 -0.99 -21.21 16 17 N -1.12 -16.57 6.00 -10.61 -0.06 -16.63 16 18 C 0.12 1.71 6.12 -4.04 -0.02 1.68 16 19 C -0.12 -1.27 5.06 -26.73 -0.14 -1.40 16 20 C 0.09 0.98 2.64 -26.69 -0.07 0.91 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 22 C -0.15 -1.29 5.42 -26.59 -0.14 -1.44 16 23 C -0.12 -0.99 6.03 -26.55 -0.16 -1.15 16 24 C -0.16 -1.28 6.14 -26.59 -0.16 -1.44 16 25 C 0.06 0.60 6.84 37.21 0.25 0.85 16 26 O -0.37 -4.74 9.94 -35.23 -0.35 -5.10 16 27 C -0.13 -3.03 9.26 -38.87 -0.36 -3.39 16 28 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 29 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 30 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.11 2.10 7.60 -52.49 -0.40 1.70 16 32 H 0.41 4.84 8.65 -34.47 -0.30 4.55 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.39 7.43 -51.93 -0.39 1.00 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.11 2.59 7.61 -52.49 -0.40 2.19 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -30.90 378.44 -11.72 -42.62 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.85 Total: 9.78 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: -3.17 Total: -38.16 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.54 Total: -35.50 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -2.29 Total: -48.27 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 51.52 SS G_CDS: -0.62 Total: 50.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.90 -11.72 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619496012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.243 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds