Wall clock time and date at job start Tue Mar 31 2020 22:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86807 * 120.00078 * 2 1 4 4 H 1.48499 * 109.47224 * 84.61710 * 3 2 1 5 5 H 1.48501 * 109.47058 * 324.61583 * 3 2 1 6 6 H 1.48501 * 109.46586 * 204.61903 * 3 2 1 7 7 C 1.39946 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00254 * 20.17905 * 7 2 1 9 9 C 1.41396 * 119.99624 * 200.18567 * 7 2 1 10 10 C 1.40724 * 120.24835 * 25.42631 * 9 7 2 11 11 C 1.37599 * 119.74877 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24493 * 0.02562 * 11 10 9 13 13 C 1.38608 * 120.50087 * 359.97438 * 12 11 10 14 14 S 1.76199 * 119.87632 * 180.02562 * 13 12 11 15 15 O 1.42093 * 106.40485 * 203.54150 * 14 13 12 16 16 O 1.42110 * 106.40248 * 336.46454 * 14 13 12 17 17 N 1.65602 * 107.21692 * 89.99783 * 14 13 12 18 18 C 1.46500 * 119.99793 * 65.00774 * 17 14 13 19 19 H 1.09004 * 110.01577 * 335.69715 * 18 17 14 20 20 C 1.53869 * 110.03694 * 97.08849 * 18 17 14 21 21 C 1.54262 * 106.60246 * 119.28666 * 20 18 17 22 22 C 1.54893 * 104.19526 * 23.60714 * 21 20 18 23 23 C 1.54265 * 110.03363 * 214.30748 * 18 17 14 24 24 H 1.09006 * 110.48462 * 335.77859 * 23 18 17 25 25 C 1.53000 * 110.48999 * 98.42064 * 23 18 17 26 26 C 1.52998 * 109.47396 * 185.00162 * 25 23 18 27 27 O 1.42896 * 109.47249 * 179.97438 * 26 25 23 28 28 C 1.37641 * 120.25085 * 359.67670 * 13 12 11 29 29 H 0.97000 * 120.00318 * 185.10418 * 1 2 3 30 30 H 1.08005 * 120.12833 * 0.02610 * 10 9 7 31 31 H 1.07998 * 119.88133 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.74252 * 179.97438 * 12 11 10 33 33 H 0.96994 * 120.00244 * 244.99283 * 17 14 13 34 34 H 1.09006 * 110.03729 * 238.57040 * 20 18 17 35 35 H 1.08996 * 110.03418 * 359.94971 * 20 18 17 36 36 H 1.08995 * 110.48933 * 142.29270 * 21 20 18 37 37 H 1.09000 * 110.48188 * 264.93456 * 21 20 18 38 38 H 1.08999 * 110.74949 * 80.37445 * 22 21 20 39 39 H 1.09000 * 110.75468 * 203.74693 * 22 21 20 40 40 H 1.09004 * 109.46871 * 305.00675 * 25 23 18 41 41 H 1.09002 * 109.46986 * 64.99725 * 25 23 18 42 42 H 1.08998 * 109.47101 * 299.99999 * 26 25 23 43 43 H 1.09007 * 109.46855 * 60.00271 * 26 25 23 44 44 H 0.96702 * 114.00512 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.12848 * 180.32420 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3761 2.1122 1.3939 5 1 1.5013 2.6172 -0.8107 6 1 3.5921 1.4099 -0.5833 7 6 2.0079 -1.2120 -0.0005 8 1 1.5177 -2.1184 -0.3236 9 6 3.3567 -1.2497 0.4220 10 6 3.8478 -0.2780 1.3136 11 6 5.1623 -0.3242 1.7176 12 6 6.0023 -1.3230 1.2492 13 6 5.5294 -2.2853 0.3708 14 16 6.6110 -3.5476 -0.2136 15 8 6.0655 -4.0061 -1.4429 16 8 7.9303 -3.0335 -0.0922 17 7 6.5037 -4.8148 0.8472 18 6 5.2431 -5.5478 0.9875 19 1 4.4079 -4.9141 0.6892 20 6 5.2742 -6.8204 0.1231 21 6 5.1099 -8.0127 1.0880 22 6 4.3997 -7.4063 2.3237 23 6 5.0604 -6.0101 2.4478 24 1 6.0263 -6.0884 2.9469 25 6 4.1423 -5.0474 3.2035 26 6 4.0765 -5.4556 4.6766 27 8 3.2195 -4.5560 5.3824 28 6 4.2163 -2.2628 -0.0412 29 1 -0.4850 -0.8367 0.0747 30 1 3.1954 0.5012 1.6793 31 1 5.5415 0.4208 2.4015 32 1 7.0327 -1.3513 1.5713 33 1 7.2756 -5.0718 1.3754 34 1 4.4536 -6.8048 -0.5942 35 1 6.2269 -6.8922 -0.4015 36 1 4.4919 -8.7878 0.6349 37 1 6.0839 -8.4147 1.3669 38 1 3.3285 -7.3116 2.1456 39 1 4.5930 -8.0059 3.2132 40 1 4.5350 -4.0336 3.1245 41 1 3.1423 -5.0842 2.7712 42 1 3.6838 -6.4693 4.7554 43 1 5.0766 -5.4186 5.1088 44 1 3.1304 -4.7553 6.3245 45 1 3.8486 -3.0166 -0.7216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619498287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:57 Heat of formation + Delta-G solvation = -132.405646 kcal Electronic energy + Delta-G solvation = -28470.903314 eV Core-core repulsion = 24578.712108 eV Total energy + Delta-G solvation = -3892.191205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.18207 -37.91710 -36.86006 -36.67577 -35.39276 -33.91111 -33.50499 -32.09754 -30.56251 -30.16452 -27.39450 -26.69943 -25.04685 -22.47904 -22.42152 -20.84077 -20.67853 -20.22908 -19.21107 -18.32792 -17.54798 -16.96747 -16.55908 -16.48631 -15.45536 -15.37166 -15.05600 -14.81362 -14.18953 -13.98877 -13.95502 -13.78475 -13.36604 -13.31495 -12.79509 -12.73376 -12.32492 -12.23638 -11.90418 -11.81022 -11.72566 -11.64082 -11.55487 -11.31080 -11.16840 -11.07971 -10.80436 -10.73413 -10.71023 -10.61990 -10.57679 -10.23849 -9.97472 -9.92144 -9.56084 -9.32827 -9.17772 -8.26146 -7.92022 -7.45305 -4.69158 0.90360 1.92085 2.47358 3.10705 3.27075 3.40970 3.47377 3.92175 4.04432 4.10405 4.31952 4.46597 4.56201 4.72094 4.91384 5.03695 5.13836 5.16760 5.27475 5.32497 5.35332 5.40553 5.46733 5.56101 5.59603 5.67036 5.81778 5.83283 5.93614 6.01378 6.02750 6.18440 6.19487 6.22119 6.34968 6.42221 6.46248 6.64603 6.94913 7.13020 7.17590 7.37953 7.40969 7.50404 7.58695 7.66762 8.20464 8.31639 8.57112 9.85878 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.004736 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.204124 B = 5911.089751 C = 7058.493896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.044 3.956 3 Si 1.066 2.934 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.079 3.921 10 C -0.203 4.203 11 C -0.087 4.087 12 C -0.161 4.161 13 C -0.620 4.620 14 S 2.685 3.315 15 O -0.966 6.966 16 O -0.975 6.975 17 N -1.113 6.113 18 C 0.155 3.845 19 H 0.096 0.904 20 C -0.139 4.139 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.090 4.090 24 H 0.083 0.917 25 C -0.119 4.119 26 C 0.079 3.921 27 O -0.570 6.570 28 C -0.116 4.116 29 H 0.289 0.711 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.412 0.588 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.375 0.625 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.713 -13.008 7.934 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.177 4.177 3 Si 0.892 3.108 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.535 4.535 8 H 0.100 0.900 9 C 0.075 3.925 10 C -0.222 4.222 11 C -0.107 4.107 12 C -0.181 4.181 13 C -0.712 4.712 14 S 2.780 3.220 15 O -0.956 6.956 16 O -0.965 6.965 17 N -0.870 5.870 18 C 0.047 3.953 19 H 0.114 0.886 20 C -0.179 4.179 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.110 4.110 24 H 0.102 0.898 25 C -0.157 4.157 26 C 0.002 3.998 27 O -0.375 6.375 28 C -0.137 4.137 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.246 0.754 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.221 0.779 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.721 -11.087 6.348 14.927 hybrid contribution -0.129 -1.719 1.419 2.233 sum 7.591 -12.806 7.767 16.792 Atomic orbital electron populations 1.70528 1.08194 1.32993 1.30883 1.27288 0.95638 1.04492 0.90298 0.83673 0.76187 0.73216 0.77711 1.20296 1.21338 1.18474 1.20697 0.95708 0.97572 1.39502 0.90046 1.17785 0.93167 0.91252 0.90269 1.21271 0.96038 1.02599 1.02326 1.20687 0.93863 0.97343 0.98766 1.20015 0.98558 0.97621 1.01954 1.29911 1.10280 1.17289 1.13670 1.01835 0.73612 0.73082 0.73448 1.93549 1.80260 1.80736 1.41093 1.93529 1.36844 1.79523 1.86618 1.55738 1.19597 1.49359 1.62318 1.21452 0.85393 0.93543 0.94909 0.88614 1.22661 1.03347 0.93795 0.98082 1.22339 1.00410 0.97478 0.95818 1.22629 1.00227 0.95096 0.98048 1.22217 0.99353 0.94754 0.94683 0.89835 1.21606 1.00774 1.00358 0.92948 1.22179 0.92691 0.91941 0.93029 1.86579 1.69669 1.56101 1.25165 1.20767 0.90885 1.01646 1.00414 0.89960 0.87522 0.87852 0.87181 0.75394 0.90614 0.90679 0.91530 0.91679 0.90822 0.91416 0.90150 0.90643 0.93894 0.94048 0.77886 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.03 13.65 55.55 0.76 -20.27 16 2 C 0.04 1.12 5.40 -17.34 -0.09 1.03 16 3 Si 1.07 23.79 24.83 -169.99 -4.22 19.57 16 4 H -0.28 -5.80 6.64 56.52 0.38 -5.42 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -5.84 6.84 56.52 0.39 -5.45 16 7 C -0.51 -13.22 9.44 -37.74 -0.36 -13.58 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 9 C 0.08 1.97 5.20 -106.83 -0.56 1.42 16 10 C -0.20 -4.77 7.21 -38.88 -0.28 -5.05 16 11 C -0.09 -1.85 10.02 -39.66 -0.40 -2.25 16 12 C -0.16 -3.31 9.53 -39.29 -0.37 -3.69 16 13 C -0.62 -12.90 5.84 -39.66 -0.23 -13.13 16 14 S 2.69 48.19 5.65 -107.50 -0.61 47.58 16 15 O -0.97 -19.59 17.03 -57.17 -0.97 -20.56 16 16 O -0.97 -19.16 17.27 -57.17 -0.99 -20.15 16 17 N -1.11 -14.86 5.39 -3.94 -0.02 -14.89 16 18 C 0.15 1.98 3.01 -66.82 -0.20 1.78 16 19 H 0.10 1.41 6.97 -51.93 -0.36 1.05 16 20 C -0.14 -1.60 6.59 -25.62 -0.17 -1.77 16 21 C -0.12 -1.08 6.83 -25.07 -0.17 -1.26 16 22 C -0.12 -1.08 5.68 -24.70 -0.14 -1.22 16 23 C -0.09 -0.95 2.56 -88.92 -0.23 -1.18 16 24 H 0.08 0.77 7.82 -51.93 -0.41 0.36 16 25 C -0.12 -1.53 4.93 -26.73 -0.13 -1.66 16 26 C 0.08 0.85 6.93 37.16 0.26 1.11 16 27 O -0.57 -7.22 13.66 -35.23 -0.48 -7.70 16 28 C -0.12 -2.66 8.64 -38.87 -0.34 -3.00 16 29 H 0.29 7.32 8.73 -40.82 -0.36 6.96 16 30 H 0.11 2.45 4.29 -52.48 -0.22 2.23 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.11 2.04 7.60 -52.49 -0.40 1.64 16 33 H 0.41 4.35 8.63 -34.47 -0.30 4.05 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.68 7.97 -51.93 -0.41 0.27 16 39 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16 42 H 0.04 0.38 7.56 -51.93 -0.39 -0.01 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.38 2.79 9.12 45.56 0.42 3.21 16 45 H 0.11 2.53 7.61 -52.49 -0.40 2.13 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -31.99 373.00 -10.20 -42.19 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.88 Total: 11.04 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: -3.41 Total: -42.43 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.74 Total: -35.15 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -2.44 Total: -48.41 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.22 Total: 19.57 kcal Atomic # 16 Polarization: 48.19 SS G_CDS: -0.61 Total: 47.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.99 -10.20 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.214 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds