Wall clock time and date at job start Tue Mar 31 2020 22:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48501 * 109.46801 * 239.99983 * 3 2 1 5 5 H 1.48498 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46795 * 120.00454 * 3 2 1 7 7 C 1.39940 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99986 * 197.84601 * 7 2 1 9 9 C 1.41398 * 119.99993 * 17.84386 * 7 2 1 10 10 C 1.40732 * 120.24355 * 24.41266 * 9 7 2 11 11 C 1.37601 * 119.74420 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24883 * 359.96972 * 11 10 9 13 13 C 1.38620 * 120.49840 * 359.77577 * 12 11 10 14 14 S 1.76202 * 119.87251 * 180.25339 * 13 12 11 15 15 O 1.42102 * 106.40059 * 23.79482 * 14 13 12 16 16 O 1.42105 * 106.39955 * 156.71191 * 14 13 12 17 17 N 1.65596 * 107.22115 * 270.25192 * 14 13 12 18 18 C 1.46499 * 119.99670 * 65.00084 * 17 14 13 19 19 H 1.08999 * 110.02075 * 335.69815 * 18 17 14 20 20 C 1.53877 * 110.03152 * 97.09563 * 18 17 14 21 21 C 1.54373 * 106.54787 * 119.27020 * 20 18 17 22 22 C 1.54895 * 104.21562 * 336.42275 * 21 20 18 23 23 C 1.54266 * 110.03200 * 214.31194 * 18 17 14 24 24 H 1.08996 * 110.49264 * 145.65106 * 23 18 17 25 25 C 1.52995 * 110.48613 * 23.13570 * 23 18 17 26 26 C 1.53008 * 109.47005 * 175.00308 * 25 23 18 27 27 O 1.42907 * 109.46683 * 179.97438 * 26 25 23 28 28 C 1.37633 * 120.25056 * 0.50609 * 13 12 11 29 29 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.12640 * 359.95346 * 10 9 7 31 31 H 1.07997 * 119.87177 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.74978 * 180.02562 * 12 11 10 33 33 H 0.96996 * 120.00158 * 245.00374 * 17 14 13 34 34 H 1.09007 * 110.03046 * 238.56655 * 20 18 17 35 35 H 1.08996 * 110.03347 * 359.97438 * 20 18 17 36 36 H 1.08991 * 110.49508 * 217.73393 * 21 20 18 37 37 H 1.08999 * 110.57506 * 95.15251 * 21 20 18 38 38 H 1.09000 * 110.75744 * 279.61310 * 22 21 20 39 39 H 1.08994 * 110.75782 * 156.23605 * 22 21 20 40 40 H 1.09002 * 109.47608 * 294.99880 * 25 23 18 41 41 H 1.08995 * 109.46979 * 55.00222 * 25 23 18 42 42 H 1.08997 * 109.46801 * 299.99494 * 26 25 23 43 43 H 1.08995 * 109.47322 * 60.00124 * 26 25 23 44 44 H 0.96697 * 113.99383 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.12948 * 179.73958 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3520 -2.4068 -0.3763 10 6 0.2208 -2.3617 -1.2123 11 6 -0.4093 -3.5309 -1.5720 12 6 0.0667 -4.7502 -1.1145 13 6 1.1832 -4.8069 -0.2949 14 16 1.7778 -6.3658 0.2715 15 8 1.3199 -7.3335 -0.6629 16 8 3.1506 -6.1804 0.5888 17 7 1.0080 -6.6945 1.7003 18 6 -0.4414 -6.9067 1.7194 19 1 -0.9022 -6.4124 0.8642 20 6 -0.7541 -8.4131 1.6891 21 6 -1.5303 -8.7272 2.9860 22 6 -1.1177 -7.5955 3.9598 23 6 -1.0386 -6.3579 3.0316 24 1 -2.0334 -5.9485 2.8563 25 6 -0.1207 -5.2919 3.6330 26 6 -0.7915 -4.6760 4.8626 27 8 0.0663 -3.6807 5.4247 28 6 1.8258 -3.6497 0.0823 29 1 -0.4850 0.8400 0.0004 30 1 -0.1515 -1.4131 -1.5699 31 1 -1.2773 -3.4987 -2.2138 32 1 -0.4339 -5.6630 -1.4022 33 1 1.5166 -6.7464 2.5246 34 1 -1.3673 -8.6497 0.8195 35 1 0.1726 -8.9862 1.6597 36 1 -1.2340 -9.6983 3.3823 37 1 -2.6048 -8.7017 2.8049 38 1 -0.1461 -7.8057 4.4069 39 1 -1.8758 -7.4530 4.7298 40 1 0.8245 -5.7493 3.9257 41 1 0.0660 -4.5137 2.8930 42 1 -1.7365 -4.2185 4.5700 43 1 -0.9781 -5.4541 5.6027 44 1 -0.2961 -3.2469 6.2093 45 1 2.6930 -3.6959 0.7244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619498289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:03 Heat of formation + Delta-G solvation = -126.341435 kcal Electronic energy + Delta-G solvation = -28426.680909 eV Core-core repulsion = 24534.752667 eV Total energy + Delta-G solvation = -3891.928241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.23823 -37.61622 -36.73386 -36.52945 -35.25008 -33.83403 -33.15744 -32.06090 -30.06005 -29.77035 -27.37058 -26.67474 -25.46913 -22.58206 -21.87930 -20.98523 -20.55340 -19.87298 -19.01275 -17.96479 -17.43453 -17.02753 -15.89694 -15.79278 -15.39532 -15.20626 -15.09387 -14.79518 -14.59188 -14.29856 -13.73528 -13.45375 -13.32788 -13.24263 -12.57325 -12.48457 -12.15886 -11.92605 -11.80540 -11.56799 -11.49967 -11.37020 -11.33661 -11.16352 -11.11551 -10.98682 -10.88967 -10.82631 -10.71506 -10.65043 -10.61473 -10.48713 -9.86249 -9.77554 -9.63673 -9.32412 -9.11476 -8.01952 -7.68537 -6.91154 -4.51351 1.08068 2.21922 2.65933 3.00629 3.03453 3.10053 3.60291 3.84649 4.16720 4.26691 4.44309 4.49527 4.59275 4.85194 5.04852 5.12194 5.22476 5.37667 5.38286 5.41997 5.46742 5.49585 5.56637 5.60612 5.69763 5.76565 5.86567 5.97146 6.04738 6.06511 6.18456 6.22467 6.30488 6.45404 6.50341 6.68104 6.77934 6.87089 7.04898 7.22578 7.29036 7.40617 7.68534 7.74168 7.83009 7.96360 8.42195 8.68827 8.73892 10.04166 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.004353 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.417668 B = 6430.520586 C = 7739.426689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.093 3.907 10 C -0.119 4.119 11 C -0.120 4.120 12 C -0.152 4.152 13 C -0.630 4.630 14 S 2.685 3.315 15 O -0.974 6.974 16 O -0.975 6.975 17 N -1.113 6.113 18 C 0.158 3.842 19 H 0.093 0.907 20 C -0.138 4.138 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.093 4.093 24 H 0.087 0.913 25 C -0.113 4.113 26 C 0.078 3.922 27 O -0.571 6.571 28 C -0.122 4.122 29 H 0.283 0.717 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.413 0.587 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.375 0.625 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 -9.529 8.682 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.090 3.910 10 C -0.139 4.139 11 C -0.140 4.140 12 C -0.173 4.173 13 C -0.722 4.722 14 S 2.781 3.219 15 O -0.964 6.964 16 O -0.965 6.965 17 N -0.871 5.871 18 C 0.050 3.950 19 H 0.111 0.889 20 C -0.178 4.178 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.113 4.113 24 H 0.105 0.895 25 C -0.151 4.151 26 C 0.000 4.000 27 O -0.375 6.375 28 C -0.143 4.143 29 H 0.094 0.906 30 H 0.142 0.858 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.248 0.752 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.221 0.779 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.516 -10.118 7.618 13.815 hybrid contribution -0.376 1.679 0.848 1.918 sum -5.892 -8.439 8.466 13.327 Atomic orbital electron populations 1.69773 1.07639 1.29656 1.34786 1.25917 0.94768 1.01499 0.91996 0.86310 0.80154 0.79814 0.80217 1.18689 1.20259 1.18775 1.19598 0.98366 0.91017 1.39843 0.89963 1.17668 0.91746 0.91968 0.89656 1.21621 0.97701 0.97125 0.97452 1.20792 0.99378 0.93171 1.00618 1.20062 0.97207 0.97196 1.02882 1.29736 1.09714 1.18115 1.14631 1.01760 0.72845 0.74734 0.72528 1.93516 1.82224 1.59518 1.61183 1.93537 1.31760 1.87313 1.83906 1.55753 1.16381 1.88271 1.26662 1.21322 0.79521 0.95300 0.98829 0.88863 1.22705 1.01154 0.95845 0.98056 1.22362 0.99977 0.98376 0.95405 1.22636 1.01492 0.94470 0.97334 1.22180 0.99609 0.95015 0.94477 0.89473 1.21499 0.98572 0.98303 0.96731 1.22203 0.92775 0.89903 0.95130 1.86559 1.47242 1.55696 1.48025 1.20775 1.00463 0.91588 1.01494 0.90584 0.85815 0.88496 0.87713 0.75197 0.90811 0.90666 0.91751 0.91566 0.91249 0.91595 0.91166 0.89702 0.93845 0.94114 0.77892 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.60 10.95 55.55 0.61 -18.99 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.23 29.60 -169.99 -5.03 13.20 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.88 9.05 -37.74 -0.34 -12.22 16 8 H 0.08 2.06 7.91 -52.48 -0.42 1.65 16 9 C 0.09 2.41 5.57 -106.82 -0.60 1.82 16 10 C -0.12 -2.96 8.70 -38.87 -0.34 -3.30 16 11 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 12 C -0.15 -3.26 8.92 -39.29 -0.35 -3.61 16 13 C -0.63 -13.70 5.84 -39.66 -0.23 -13.93 16 14 S 2.69 50.56 5.65 -107.50 -0.61 49.95 16 15 O -0.97 -19.68 17.03 -57.17 -0.97 -20.65 16 16 O -0.97 -20.84 17.27 -57.17 -0.99 -21.82 16 17 N -1.11 -16.12 4.58 -3.94 -0.02 -16.14 16 18 C 0.16 2.04 3.31 -66.81 -0.22 1.82 16 19 H 0.09 1.30 7.29 -51.93 -0.38 0.92 16 20 C -0.14 -1.56 6.60 -25.55 -0.17 -1.72 16 21 C -0.12 -1.10 6.83 -25.01 -0.17 -1.27 16 22 C -0.12 -1.09 5.68 -24.73 -0.14 -1.23 16 23 C -0.09 -1.03 2.80 -88.96 -0.25 -1.28 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 25 C -0.11 -1.48 4.16 -26.73 -0.11 -1.59 16 26 C 0.08 0.91 6.93 37.16 0.26 1.16 16 27 O -0.57 -7.69 13.66 -35.23 -0.48 -8.17 16 28 C -0.12 -2.94 9.26 -38.87 -0.36 -3.30 16 29 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 30 H 0.12 3.13 6.15 -52.49 -0.32 2.80 16 31 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.10 2.01 7.60 -52.48 -0.40 1.61 16 33 H 0.41 5.24 7.15 -34.47 -0.25 4.99 16 34 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.62 7.97 -51.93 -0.41 0.21 16 39 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 40 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.38 7.56 -51.93 -0.39 -0.01 16 44 H 0.37 3.18 9.12 45.56 0.42 3.59 16 45 H 0.11 2.61 7.60 -52.49 -0.40 2.21 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -31.72 374.98 -11.16 -42.88 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -5.82 Total: 14.06 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: -3.51 Total: -39.96 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.59 Total: -35.14 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -2.44 Total: -50.65 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: 50.56 SS G_CDS: -0.61 Total: 49.95 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.72 -11.16 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.457 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds