Wall clock time and date at job start Tue Mar 31 2020 22:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48501 * 109.46801 * 239.99983 * 3 2 1 5 5 H 1.48498 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46795 * 120.00454 * 3 2 1 7 7 C 1.39940 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99986 * 197.84601 * 7 2 1 9 9 C 1.41398 * 119.99993 * 17.84386 * 7 2 1 10 10 C 1.40732 * 120.24355 * 24.41266 * 9 7 2 11 11 C 1.37601 * 119.74420 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24883 * 359.96972 * 11 10 9 13 13 C 1.38620 * 120.49840 * 359.77577 * 12 11 10 14 14 S 1.76202 * 119.87251 * 180.25339 * 13 12 11 15 15 O 1.42102 * 106.40059 * 23.79482 * 14 13 12 16 16 O 1.42105 * 106.39955 * 156.71191 * 14 13 12 17 17 N 1.65596 * 107.22115 * 270.25192 * 14 13 12 18 18 C 1.46499 * 119.99670 * 65.00084 * 17 14 13 19 19 H 1.08999 * 110.02075 * 335.69815 * 18 17 14 20 20 C 1.53877 * 110.03152 * 97.09563 * 18 17 14 21 21 C 1.54373 * 106.54787 * 119.27020 * 20 18 17 22 22 C 1.54895 * 104.21562 * 336.42275 * 21 20 18 23 23 C 1.54266 * 110.03200 * 214.31194 * 18 17 14 24 24 H 1.08996 * 110.49264 * 145.65106 * 23 18 17 25 25 C 1.52995 * 110.48613 * 23.13570 * 23 18 17 26 26 C 1.53008 * 109.47005 * 175.00308 * 25 23 18 27 27 O 1.42907 * 109.46683 * 179.97438 * 26 25 23 28 28 C 1.37633 * 120.25056 * 0.50609 * 13 12 11 29 29 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.12640 * 359.95346 * 10 9 7 31 31 H 1.07997 * 119.87177 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.74978 * 180.02562 * 12 11 10 33 33 H 0.96996 * 120.00158 * 245.00374 * 17 14 13 34 34 H 1.09007 * 110.03046 * 238.56655 * 20 18 17 35 35 H 1.08996 * 110.03347 * 359.97438 * 20 18 17 36 36 H 1.08991 * 110.49508 * 217.73393 * 21 20 18 37 37 H 1.08999 * 110.57506 * 95.15251 * 21 20 18 38 38 H 1.09000 * 110.75744 * 279.61310 * 22 21 20 39 39 H 1.08994 * 110.75782 * 156.23605 * 22 21 20 40 40 H 1.09002 * 109.47608 * 294.99880 * 25 23 18 41 41 H 1.08995 * 109.46979 * 55.00222 * 25 23 18 42 42 H 1.08997 * 109.46801 * 299.99494 * 26 25 23 43 43 H 1.08995 * 109.47322 * 60.00124 * 26 25 23 44 44 H 0.96697 * 113.99383 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.12948 * 179.73958 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3520 -2.4068 -0.3763 10 6 0.2208 -2.3617 -1.2123 11 6 -0.4093 -3.5309 -1.5720 12 6 0.0667 -4.7502 -1.1145 13 6 1.1832 -4.8069 -0.2949 14 16 1.7778 -6.3658 0.2715 15 8 1.3199 -7.3335 -0.6629 16 8 3.1506 -6.1804 0.5888 17 7 1.0080 -6.6945 1.7003 18 6 -0.4414 -6.9067 1.7194 19 1 -0.9022 -6.4124 0.8642 20 6 -0.7541 -8.4131 1.6891 21 6 -1.5303 -8.7272 2.9860 22 6 -1.1177 -7.5955 3.9598 23 6 -1.0386 -6.3579 3.0316 24 1 -2.0334 -5.9485 2.8563 25 6 -0.1207 -5.2919 3.6330 26 6 -0.7915 -4.6760 4.8626 27 8 0.0663 -3.6807 5.4247 28 6 1.8258 -3.6497 0.0823 29 1 -0.4850 0.8400 0.0004 30 1 -0.1515 -1.4131 -1.5699 31 1 -1.2773 -3.4987 -2.2138 32 1 -0.4339 -5.6630 -1.4022 33 1 1.5166 -6.7464 2.5246 34 1 -1.3673 -8.6497 0.8195 35 1 0.1726 -8.9862 1.6597 36 1 -1.2340 -9.6983 3.3823 37 1 -2.6048 -8.7017 2.8049 38 1 -0.1461 -7.8057 4.4069 39 1 -1.8758 -7.4530 4.7298 40 1 0.8245 -5.7493 3.9257 41 1 0.0660 -4.5137 2.8930 42 1 -1.7365 -4.2185 4.5700 43 1 -0.9781 -5.4541 5.6027 44 1 -0.2961 -3.2469 6.2093 45 1 2.6930 -3.6959 0.7244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619498289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:02 Heat of formation + Delta-G solvation = -149.056990 kcal Electronic energy + Delta-G solvation = -28427.665929 eV Core-core repulsion = 24534.752667 eV Total energy + Delta-G solvation = -3892.913262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18899 -39.44321 -38.24262 -37.64064 -36.89939 -35.67816 -34.26382 -33.00636 -31.92036 -31.59026 -28.28810 -27.60209 -27.34281 -23.69124 -23.51085 -22.80397 -21.38668 -21.02740 -20.41171 -19.59972 -18.69042 -18.29619 -17.71833 -17.07822 -16.82010 -16.54599 -16.37268 -16.11708 -15.94953 -15.36872 -15.17500 -15.07354 -14.64417 -14.30748 -14.15014 -13.72745 -13.66013 -13.33451 -13.26458 -13.13482 -13.08792 -13.03589 -12.83688 -12.79955 -12.59352 -12.26828 -12.21143 -11.89093 -11.78131 -11.66919 -11.57669 -11.46067 -11.37096 -11.31523 -11.14236 -10.78941 -10.40002 -9.84669 -9.56290 -8.73950 -6.45759 -0.47548 0.40521 0.84385 1.35619 1.44987 1.48408 2.14031 2.16784 2.54839 2.78056 3.28597 3.45942 3.53030 3.60606 3.73903 4.06211 4.19001 4.24588 4.31099 4.41358 4.44712 4.52144 4.55315 4.65674 4.66299 4.74728 4.83534 4.83799 4.86509 4.89883 5.06101 5.09048 5.17579 5.19469 5.27197 5.33574 5.40020 5.40442 5.52366 5.56129 5.58631 5.87796 5.93103 6.09778 6.12972 6.51694 6.78852 6.84232 6.94865 8.23742 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.004353 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.417668 B = 6430.520586 C = 7739.426689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.040 3.960 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.075 0.925 9 C 0.065 3.935 10 C -0.140 4.140 11 C -0.121 4.121 12 C -0.148 4.148 13 C -0.636 4.636 14 S 2.714 3.286 15 O -0.982 6.982 16 O -1.001 7.001 17 N -1.097 6.097 18 C 0.145 3.855 19 H 0.081 0.919 20 C -0.140 4.140 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.087 4.087 24 H 0.096 0.904 25 C -0.115 4.115 26 C 0.077 3.923 27 O -0.602 6.602 28 C -0.145 4.145 29 H 0.292 0.708 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.423 0.577 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.394 0.606 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 -10.829 9.802 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.529 4.529 8 H 0.093 0.907 9 C 0.062 3.938 10 C -0.160 4.160 11 C -0.140 4.140 12 C -0.168 4.168 13 C -0.725 4.725 14 S 2.807 3.193 15 O -0.972 6.972 16 O -0.991 6.991 17 N -0.859 5.859 18 C 0.038 3.962 19 H 0.099 0.901 20 C -0.179 4.179 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.107 4.107 24 H 0.114 0.886 25 C -0.153 4.153 26 C -0.001 4.001 27 O -0.410 6.410 28 C -0.166 4.166 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.261 0.739 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.244 0.756 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.038 -11.399 8.738 15.995 hybrid contribution 0.025 1.955 0.523 2.024 sum -7.013 -9.445 9.261 14.971 Atomic orbital electron populations 1.69802 1.08805 1.31001 1.34818 1.26696 0.95553 1.04322 0.90989 0.85273 0.78927 0.75649 0.80063 1.18543 1.18624 1.18553 1.19822 0.98476 0.92470 1.42133 0.90694 1.18011 0.92647 0.92781 0.90398 1.21626 0.98227 0.97741 0.98396 1.21140 0.99894 0.92596 1.00385 1.20454 0.96733 0.98006 1.01635 1.30227 1.09201 1.19086 1.13957 1.00926 0.72036 0.73351 0.73011 1.93500 1.82314 1.58906 1.62433 1.93495 1.33809 1.87338 1.84488 1.55398 1.17453 1.87451 1.25632 1.21641 0.77973 0.96970 0.99617 0.90069 1.22714 1.01416 0.93959 0.99815 1.22346 1.00382 0.98889 0.93739 1.22630 1.02435 0.92883 0.97302 1.22159 0.99145 0.95435 0.93933 0.88602 1.21496 0.99537 0.97756 0.96543 1.22280 0.92193 0.90425 0.95168 1.86506 1.48563 1.56541 1.49400 1.20792 1.01067 0.92251 1.02487 0.89712 0.86880 0.85431 0.84958 0.73930 0.90579 0.91190 0.90353 0.90244 0.91038 0.89437 0.91204 0.94146 0.93507 0.90920 0.75634 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.49 10.95 21.83 0.24 -41.25 16 2 C 0.04 2.01 5.14 85.26 0.44 2.45 16 3 Si 0.98 37.95 29.60 68.60 2.03 39.98 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.50 -27.23 9.05 23.46 0.21 -27.02 16 8 H 0.07 4.01 7.91 -2.91 -0.02 3.98 16 9 C 0.06 3.53 5.57 -21.29 -0.12 3.41 16 10 C -0.14 -7.19 8.70 22.73 0.20 -6.99 16 11 C -0.12 -5.38 10.02 22.22 0.22 -5.16 16 12 C -0.15 -6.26 8.92 22.46 0.20 -6.06 16 13 C -0.64 -28.17 5.84 22.22 0.13 -28.04 16 14 S 2.71 102.20 5.65 -56.49 -0.32 101.88 16 15 O -0.98 -38.61 17.03 -128.00 -2.18 -40.79 16 16 O -1.00 -43.43 17.27 -128.00 -2.21 -45.64 16 17 N -1.10 -31.26 4.58 -166.37 -0.76 -32.02 16 18 C 0.14 3.54 3.31 45.72 0.15 3.70 16 19 H 0.08 2.18 7.29 -2.39 -0.02 2.16 16 20 C -0.14 -2.81 6.60 31.36 0.21 -2.60 16 21 C -0.12 -1.63 6.83 31.71 0.22 -1.41 16 22 C -0.12 -1.66 5.68 31.89 0.18 -1.48 16 23 C -0.09 -1.76 2.80 -9.72 -0.03 -1.79 16 24 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 25 C -0.12 -2.97 4.16 30.60 0.13 -2.84 16 26 C 0.08 1.68 6.93 71.98 0.50 2.18 16 27 O -0.60 -15.95 13.66 -148.98 -2.04 -17.99 16 28 C -0.14 -7.35 9.26 22.73 0.21 -7.14 16 29 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 30 H 0.11 5.94 6.15 -2.91 -0.02 5.93 16 31 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 32 H 0.13 4.83 7.60 -2.91 -0.02 4.81 16 33 H 0.42 10.52 7.15 -96.75 -0.69 9.83 16 34 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.07 1.49 7.92 -2.39 -0.02 1.47 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.03 7.97 -2.39 -0.02 1.01 16 39 H 0.09 0.95 8.06 -2.39 -0.02 0.93 16 40 H 0.07 1.74 6.55 -2.39 -0.02 1.73 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.14 7.56 -2.39 -0.02 1.12 16 44 H 0.39 6.34 9.12 -74.06 -0.68 5.66 16 45 H 0.10 5.21 7.60 -2.91 -0.02 5.19 16 Total: -1.00 -70.54 374.98 -2.74 -73.28 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: -0.35 Total: 41.35 kcal Atomic # 6 Polarization: -81.65 SS G_CDS: 2.85 Total: -78.80 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -0.52 Total: -73.28 kcal Atomic # 8 Polarization: -97.99 SS G_CDS: -6.43 Total: -104.41 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: 102.20 SS G_CDS: -0.32 Total: 101.88 kcal Total: -70.54 -2.74 -73.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.779 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds