Wall clock time and date at job start Tue Mar 31 2020 22:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86799 * 120.00101 * 2 1 4 4 H 1.48496 * 109.47349 * 240.00344 * 3 2 1 5 5 H 1.48507 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47275 * 120.00368 * 3 2 1 7 7 C 1.39945 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00331 * 162.22115 * 7 2 1 9 9 C 1.41396 * 119.99911 * 342.22636 * 7 2 1 10 10 C 1.40736 * 120.24245 * 335.27117 * 9 7 2 11 11 C 1.37601 * 119.74257 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24867 * 359.72804 * 11 10 9 13 13 C 1.38612 * 120.49896 * 0.54798 * 12 11 10 14 14 S 1.76201 * 119.87438 * 179.72380 * 13 12 11 15 15 O 1.42095 * 106.40396 * 156.18846 * 14 13 12 16 16 O 1.42102 * 106.40351 * 23.26481 * 14 13 12 17 17 N 1.65606 * 107.21844 * 269.73049 * 14 13 12 18 18 C 1.46497 * 119.99912 * 64.99845 * 17 14 13 19 19 H 1.08999 * 109.47295 * 25.00322 * 18 17 14 20 20 C 1.53007 * 109.47170 * 264.99949 * 18 17 14 21 21 O 1.42896 * 109.46964 * 295.00005 * 20 18 17 22 22 C 1.53003 * 109.47185 * 145.00127 * 18 17 14 23 23 C 1.53000 * 109.46921 * 295.00057 * 22 18 17 24 24 C 1.53781 * 113.61143 * 272.49304 * 23 22 18 25 25 C 1.53778 * 87.08130 * 220.02056 * 24 23 22 26 26 C 1.53785 * 87.08278 * 25.43605 * 25 24 23 27 27 C 1.37633 * 120.25192 * 359.45079 * 13 12 11 28 28 H 0.97005 * 120.00141 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.12683 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.87133 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.74733 * 180.29815 * 12 11 10 32 32 H 0.96998 * 119.99717 * 245.00228 * 17 14 13 33 33 H 1.09000 * 109.46719 * 55.00494 * 20 18 17 34 34 H 1.08994 * 109.46753 * 174.99929 * 20 18 17 35 35 H 0.96707 * 113.99857 * 179.97438 * 21 20 18 36 36 H 1.08996 * 109.46905 * 174.99784 * 22 18 17 37 37 H 1.09003 * 109.46889 * 55.00163 * 22 18 17 38 38 H 1.08999 * 112.85109 * 43.80086 * 23 22 18 39 39 H 1.08995 * 113.61961 * 334.56945 * 24 23 22 40 40 H 1.09004 * 113.61163 * 105.47376 * 24 23 22 41 41 H 1.09001 * 113.61601 * 270.88526 * 25 24 23 42 42 H 1.09000 * 113.62048 * 139.98034 * 25 24 23 43 43 H 1.09003 * 113.61435 * 220.02016 * 26 25 24 44 44 H 1.08999 * 113.69121 * 89.12437 * 26 25 24 45 45 H 1.08000 * 120.13014 * 180.24436 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2342 -0.2861 9 6 1.3515 -2.4074 0.3727 10 6 0.2234 -2.3640 1.2130 11 6 -0.4071 -3.5337 1.5702 12 6 0.0616 -4.7514 1.1010 13 6 1.1752 -4.8064 0.2775 14 16 1.7612 -6.3633 -0.3034 15 8 2.4870 -6.0993 -1.4962 16 8 0.6557 -7.2544 -0.2474 17 7 2.8634 -6.9158 0.8022 18 6 2.4324 -7.2510 2.1616 19 1 1.3728 -7.5066 2.1542 20 6 2.6606 -6.0487 3.0800 21 8 4.0615 -5.7860 3.1816 22 6 3.2413 -8.4445 2.6735 23 6 2.9176 -9.6794 1.8301 24 6 1.7031 -10.4727 2.3406 25 6 2.4946 -11.7480 2.0058 26 6 3.7707 -10.9087 2.1852 27 6 1.8217 -3.6492 -0.0928 28 1 -0.4850 0.8401 0.0004 29 1 -0.1460 -1.4164 1.5760 30 1 -1.2732 -3.5028 2.2146 31 1 -0.4424 -5.6642 1.3826 32 1 3.7944 -7.0174 0.5496 33 1 2.1560 -5.1752 2.6671 34 1 2.2589 -6.2661 4.0696 35 1 4.2806 -5.0346 3.7495 36 1 2.9841 -8.6380 3.7148 37 1 4.3056 -8.2215 2.5975 38 1 2.8834 -9.4653 0.7619 39 1 1.5136 -10.3436 3.4061 40 1 0.8086 -10.3415 1.7316 41 1 2.3436 -12.1003 0.9854 42 1 2.3839 -12.5382 2.7482 43 1 4.5453 -11.1294 1.4508 44 1 4.1477 -10.8980 3.2078 45 1 2.6869 -3.6940 -0.7377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619504439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:18 Heat of formation + Delta-G solvation = -102.319525 kcal Electronic energy + Delta-G solvation = -28116.799816 eV Core-core repulsion = 24225.913243 eV Total energy + Delta-G solvation = -3890.886573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.26809 -37.72613 -37.26210 -36.59034 -35.27652 -34.69999 -33.87298 -30.23319 -30.10615 -29.82774 -27.40584 -25.64378 -25.50693 -23.22124 -21.89692 -21.12147 -20.85800 -19.41772 -19.16133 -18.09360 -17.32586 -16.78513 -16.11732 -15.89701 -15.52270 -15.20870 -14.92390 -14.80910 -14.57213 -14.08802 -13.73310 -13.48386 -13.41452 -13.20010 -12.60595 -12.50946 -12.35014 -12.01642 -11.97874 -11.83456 -11.57150 -11.51248 -11.39990 -11.36841 -11.11896 -11.07946 -11.06998 -10.87361 -10.64313 -10.63397 -10.26044 -10.13554 -9.80316 -9.76278 -9.66343 -9.35877 -9.08745 -8.05308 -7.72566 -6.94734 -4.55971 1.05408 2.17821 2.61449 2.97754 2.99888 3.05459 3.57594 3.80904 4.24658 4.38318 4.41983 4.48868 4.60139 4.65854 4.79920 4.98910 5.08320 5.15779 5.36512 5.41844 5.47267 5.53209 5.61589 5.65954 5.72154 5.77989 5.82289 5.99293 5.99753 6.03251 6.09122 6.14805 6.20972 6.44071 6.49963 6.64187 6.73507 6.83065 7.01001 7.18471 7.30941 7.36590 7.69411 7.75195 7.78012 7.91722 8.37452 8.64386 8.69205 10.00854 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.003158 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.401588 B = 8864.473918 C = 9160.583348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.093 3.907 10 C -0.120 4.120 11 C -0.120 4.120 12 C -0.152 4.152 13 C -0.630 4.630 14 S 2.685 3.315 15 O -0.973 6.973 16 O -0.975 6.975 17 N -1.108 6.108 18 C 0.159 3.841 19 H 0.102 0.898 20 C 0.050 3.950 21 O -0.566 6.566 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.121 4.121 28 H 0.284 0.716 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.416 0.584 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.377 0.623 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 -12.622 8.598 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.089 3.911 10 C -0.140 4.140 11 C -0.140 4.140 12 C -0.173 4.173 13 C -0.721 4.721 14 S 2.780 3.220 15 O -0.964 6.964 16 O -0.965 6.965 17 N -0.865 5.865 18 C 0.051 3.949 19 H 0.120 0.880 20 C -0.030 4.030 21 O -0.371 6.371 22 C -0.144 4.144 23 C -0.131 4.131 24 C -0.179 4.179 25 C -0.181 4.181 26 C -0.175 4.175 27 C -0.143 4.143 28 H 0.095 0.905 29 H 0.141 0.859 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.250 0.750 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.223 0.777 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.186 -13.432 7.442 15.916 hybrid contribution 0.454 2.017 0.688 2.179 sum 4.640 -11.414 8.131 14.762 Atomic orbital electron populations 1.69773 1.07668 1.29773 1.34579 1.25936 0.94777 1.01557 0.92058 0.86293 0.80116 0.79804 0.80162 1.18787 1.20240 1.18718 1.19588 0.98365 0.91017 1.40015 0.89976 1.17669 0.91803 0.91977 0.89628 1.21618 0.97711 0.97064 0.97569 1.20800 0.99270 0.93171 1.00752 1.20057 0.97376 0.97398 1.02496 1.29761 1.09004 1.18012 1.15369 1.01776 0.72925 0.74547 0.72725 1.93539 1.72760 1.86233 1.43841 1.93513 1.52487 1.63975 1.86511 1.55538 1.24078 1.82771 1.24111 1.20836 0.99614 0.93446 0.80981 0.88033 1.22893 0.82796 0.98870 0.98431 1.86407 1.23360 1.54450 1.72906 1.21716 1.01169 0.92659 0.98807 1.22598 0.96484 0.93349 1.00647 1.23017 0.97717 0.95923 1.01213 1.22801 0.97000 0.96728 1.01588 1.22948 0.96605 0.96416 1.01570 1.20749 1.00934 0.91685 1.00891 0.90475 0.85863 0.88468 0.87702 0.75012 0.91395 0.93261 0.77674 0.90964 0.90274 0.88949 0.90219 0.91072 0.90365 0.91835 0.91789 0.90282 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.58 10.97 55.55 0.61 -18.97 16 2 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.65 9.05 -37.74 -0.34 -12.00 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.09 2.34 5.57 -106.82 -0.60 1.75 16 10 C -0.12 -2.89 8.70 -38.87 -0.34 -3.23 16 11 C -0.12 -2.59 10.02 -39.66 -0.40 -2.99 16 12 C -0.15 -3.15 8.73 -39.29 -0.34 -3.49 16 13 C -0.63 -13.38 4.93 -39.66 -0.20 -13.58 16 14 S 2.68 50.29 5.72 -107.50 -0.61 49.68 16 15 O -0.97 -20.95 17.27 -57.17 -0.99 -21.94 16 16 O -0.97 -19.54 16.60 -57.17 -0.95 -20.49 16 17 N -1.11 -16.03 4.79 -4.89 -0.02 -16.05 16 18 C 0.16 2.03 2.70 -67.93 -0.18 1.84 16 19 H 0.10 1.31 7.50 -51.93 -0.39 0.92 16 20 C 0.05 0.63 6.88 37.16 0.26 0.88 16 21 O -0.57 -6.94 12.83 -35.23 -0.45 -7.39 16 22 C -0.10 -1.11 4.37 -26.73 -0.12 -1.22 16 23 C -0.11 -1.20 3.59 -89.80 -0.32 -1.52 16 24 C -0.14 -1.43 7.63 -25.92 -0.20 -1.63 16 25 C -0.14 -1.30 8.08 -25.92 -0.21 -1.51 16 26 C -0.14 -1.26 7.64 -25.91 -0.20 -1.45 16 27 C -0.12 -2.87 9.26 -38.87 -0.36 -3.23 16 28 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 29 H 0.12 3.04 6.18 -52.49 -0.32 2.72 16 30 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.10 1.95 7.59 -52.48 -0.40 1.55 16 32 H 0.42 5.41 8.84 -34.47 -0.30 5.11 16 33 H 0.07 1.03 6.19 -51.93 -0.32 0.71 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.38 3.38 9.12 45.56 0.42 3.80 16 36 H 0.07 0.67 7.84 -51.93 -0.41 0.27 16 37 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 38 H 0.09 1.11 7.62 -51.93 -0.40 0.72 16 39 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.66 8.10 -51.93 -0.42 0.23 16 45 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 378.55 15.07 5.70 5.70 Total: -1.00 -30.43 378.55 -11.22 -41.64 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -5.84 Total: 14.65 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: -3.63 Total: -39.66 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.59 Total: -35.02 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -2.39 Total: -49.82 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 50.29 SS G_CDS: -0.61 Total: 49.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.43 -11.22 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619504439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.675 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds