Wall clock time and date at job start Tue Mar 31 2020 22:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86799 * 120.00101 * 2 1 4 4 H 1.48496 * 109.47349 * 240.00344 * 3 2 1 5 5 H 1.48507 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47275 * 120.00368 * 3 2 1 7 7 C 1.39945 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00331 * 162.22115 * 7 2 1 9 9 C 1.41396 * 119.99911 * 342.22636 * 7 2 1 10 10 C 1.40736 * 120.24245 * 335.27117 * 9 7 2 11 11 C 1.37601 * 119.74257 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24867 * 359.72804 * 11 10 9 13 13 C 1.38612 * 120.49896 * 0.54798 * 12 11 10 14 14 S 1.76201 * 119.87438 * 179.72380 * 13 12 11 15 15 O 1.42095 * 106.40396 * 156.18846 * 14 13 12 16 16 O 1.42102 * 106.40351 * 23.26481 * 14 13 12 17 17 N 1.65606 * 107.21844 * 269.73049 * 14 13 12 18 18 C 1.46497 * 119.99912 * 64.99845 * 17 14 13 19 19 H 1.08999 * 109.47295 * 25.00322 * 18 17 14 20 20 C 1.53007 * 109.47170 * 264.99949 * 18 17 14 21 21 O 1.42896 * 109.46964 * 295.00005 * 20 18 17 22 22 C 1.53003 * 109.47185 * 145.00127 * 18 17 14 23 23 C 1.53000 * 109.46921 * 295.00057 * 22 18 17 24 24 C 1.53781 * 113.61143 * 272.49304 * 23 22 18 25 25 C 1.53778 * 87.08130 * 220.02056 * 24 23 22 26 26 C 1.53785 * 87.08278 * 25.43605 * 25 24 23 27 27 C 1.37633 * 120.25192 * 359.45079 * 13 12 11 28 28 H 0.97005 * 120.00141 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.12683 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.87133 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.74733 * 180.29815 * 12 11 10 32 32 H 0.96998 * 119.99717 * 245.00228 * 17 14 13 33 33 H 1.09000 * 109.46719 * 55.00494 * 20 18 17 34 34 H 1.08994 * 109.46753 * 174.99929 * 20 18 17 35 35 H 0.96707 * 113.99857 * 179.97438 * 21 20 18 36 36 H 1.08996 * 109.46905 * 174.99784 * 22 18 17 37 37 H 1.09003 * 109.46889 * 55.00163 * 22 18 17 38 38 H 1.08999 * 112.85109 * 43.80086 * 23 22 18 39 39 H 1.08995 * 113.61961 * 334.56945 * 24 23 22 40 40 H 1.09004 * 113.61163 * 105.47376 * 24 23 22 41 41 H 1.09001 * 113.61601 * 270.88526 * 25 24 23 42 42 H 1.09000 * 113.62048 * 139.98034 * 25 24 23 43 43 H 1.09003 * 113.61435 * 220.02016 * 26 25 24 44 44 H 1.08999 * 113.69121 * 89.12437 * 26 25 24 45 45 H 1.08000 * 120.13014 * 180.24436 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2342 -0.2861 9 6 1.3515 -2.4074 0.3727 10 6 0.2234 -2.3640 1.2130 11 6 -0.4071 -3.5337 1.5702 12 6 0.0616 -4.7514 1.1010 13 6 1.1752 -4.8064 0.2775 14 16 1.7612 -6.3633 -0.3034 15 8 2.4870 -6.0993 -1.4962 16 8 0.6557 -7.2544 -0.2474 17 7 2.8634 -6.9158 0.8022 18 6 2.4324 -7.2510 2.1616 19 1 1.3728 -7.5066 2.1542 20 6 2.6606 -6.0487 3.0800 21 8 4.0615 -5.7860 3.1816 22 6 3.2413 -8.4445 2.6735 23 6 2.9176 -9.6794 1.8301 24 6 1.7031 -10.4727 2.3406 25 6 2.4946 -11.7480 2.0058 26 6 3.7707 -10.9087 2.1852 27 6 1.8217 -3.6492 -0.0928 28 1 -0.4850 0.8401 0.0004 29 1 -0.1460 -1.4164 1.5760 30 1 -1.2732 -3.5028 2.2146 31 1 -0.4424 -5.6642 1.3826 32 1 3.7944 -7.0174 0.5496 33 1 2.1560 -5.1752 2.6671 34 1 2.2589 -6.2661 4.0696 35 1 4.2806 -5.0346 3.7495 36 1 2.9841 -8.6380 3.7148 37 1 4.3056 -8.2215 2.5975 38 1 2.8834 -9.4653 0.7619 39 1 1.5136 -10.3436 3.4061 40 1 0.8086 -10.3415 1.7316 41 1 2.3436 -12.1003 0.9854 42 1 2.3839 -12.5382 2.7482 43 1 4.5453 -11.1294 1.4508 44 1 4.1477 -10.8980 3.2078 45 1 2.6869 -3.6940 -0.7377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619504439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:17 Heat of formation + Delta-G solvation = -123.435075 kcal Electronic energy + Delta-G solvation = -28117.715455 eV Core-core repulsion = 24225.913243 eV Total energy + Delta-G solvation = -3891.802212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.10780 -39.46366 -38.37296 -38.08263 -36.90925 -35.75980 -35.66620 -31.91574 -31.59550 -31.26433 -28.35192 -27.33385 -26.37442 -24.07503 -23.63698 -22.81315 -21.95843 -20.68253 -20.13912 -19.70892 -18.67910 -17.97409 -17.73387 -17.28916 -16.80895 -16.59021 -16.34689 -16.11715 -15.65730 -15.34301 -15.09285 -15.00412 -14.60562 -14.34583 -14.27512 -13.71868 -13.35983 -13.26958 -13.19854 -13.14174 -13.06731 -13.04796 -13.02253 -12.87464 -12.81400 -12.56221 -12.22177 -12.17486 -11.92709 -11.57331 -11.48214 -11.30478 -11.14445 -11.05263 -10.90459 -10.71963 -10.30349 -9.81495 -9.54489 -8.73418 -6.45326 -0.48140 0.41545 0.85380 1.36718 1.45971 1.49328 2.13074 2.17979 2.55086 2.79786 3.43488 3.50770 3.52004 3.63209 3.84761 3.88564 4.05881 4.15293 4.22287 4.31504 4.43596 4.48612 4.52986 4.67367 4.75532 4.85441 4.89403 4.91193 4.92668 4.96742 5.04272 5.07732 5.14261 5.19574 5.21440 5.24362 5.38919 5.41418 5.57376 5.58252 5.72977 5.89265 5.93952 6.11099 6.15659 6.52765 6.79914 6.85062 6.94298 8.24530 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.003158 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.401588 B = 8864.473918 C = 9160.583348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.500 4.500 8 H 0.078 0.922 9 C 0.066 3.934 10 C -0.138 4.138 11 C -0.120 4.120 12 C -0.143 4.143 13 C -0.633 4.633 14 S 2.711 3.289 15 O -1.003 7.003 16 O -0.984 6.984 17 N -1.092 6.092 18 C 0.150 3.850 19 H 0.103 0.897 20 C 0.051 3.949 21 O -0.576 6.576 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.131 4.131 27 C -0.143 4.143 28 H 0.292 0.708 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.424 0.576 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.391 0.609 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -13.763 10.367 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.096 0.904 9 C 0.063 3.937 10 C -0.158 4.158 11 C -0.139 4.139 12 C -0.164 4.164 13 C -0.722 4.722 14 S 2.804 3.196 15 O -0.993 6.993 16 O -0.974 6.974 17 N -0.853 5.853 18 C 0.043 3.957 19 H 0.120 0.880 20 C -0.028 4.028 21 O -0.383 6.383 22 C -0.133 4.133 23 C -0.141 4.141 24 C -0.181 4.181 25 C -0.180 4.180 26 C -0.169 4.169 27 C -0.164 4.164 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.261 0.739 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.514 -14.557 9.223 17.814 hybrid contribution 0.326 2.204 0.189 2.236 sum 4.839 -12.353 9.412 16.266 Atomic orbital electron populations 1.69814 1.08960 1.31039 1.35170 1.26743 0.95514 1.04523 0.91038 0.85233 0.78805 0.75469 0.80144 1.18724 1.19067 1.18071 1.19833 0.98574 0.92352 1.42127 0.90421 1.17988 0.92673 0.92705 0.90352 1.21620 0.98160 0.97658 0.98376 1.21126 0.99696 0.92527 1.00538 1.20425 0.96667 0.98181 1.01137 1.30164 1.08806 1.18741 1.14487 1.00968 0.72816 0.73409 0.72407 1.93494 1.73301 1.86447 1.46071 1.93498 1.53547 1.63516 1.86804 1.55199 1.23841 1.81724 1.24580 1.21136 1.00203 0.94671 0.79672 0.87958 1.22833 0.82928 0.97487 0.99576 1.86369 1.23043 1.55310 1.73574 1.21666 1.00587 0.91314 0.99729 1.22620 0.97652 0.94111 0.99678 1.23073 0.96832 0.96418 1.01815 1.22803 0.96659 0.96772 1.01778 1.22935 0.96440 0.95129 1.02351 1.20758 1.01524 0.92303 1.01834 0.89748 0.87005 0.85448 0.85003 0.73938 0.94236 0.90468 0.76075 0.88833 0.90376 0.90805 0.88698 0.92685 0.90858 0.90460 0.91712 0.88917 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.60 10.97 21.83 0.24 -41.36 16 2 C 0.04 1.82 5.14 85.26 0.44 2.26 16 3 Si 0.98 36.98 29.59 68.60 2.03 39.01 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.50 -26.31 9.05 23.46 0.21 -26.10 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.07 3.45 5.57 -21.29 -0.12 3.34 16 10 C -0.14 -6.82 8.70 22.73 0.20 -6.62 16 11 C -0.12 -5.07 10.02 22.22 0.22 -4.85 16 12 C -0.14 -5.78 8.73 22.46 0.20 -5.59 16 13 C -0.63 -26.96 4.93 22.22 0.11 -26.85 16 14 S 2.71 100.71 5.72 -56.49 -0.32 100.39 16 15 O -1.00 -43.63 17.27 -128.00 -2.21 -45.84 16 16 O -0.98 -38.40 16.60 -128.00 -2.12 -40.52 16 17 N -1.09 -30.62 4.79 -169.38 -0.81 -31.43 16 18 C 0.15 3.53 2.70 45.00 0.12 3.65 16 19 H 0.10 2.42 7.50 -2.39 -0.02 2.40 16 20 C 0.05 1.20 6.88 71.98 0.50 1.69 16 21 O -0.58 -13.09 12.83 -148.98 -1.91 -15.00 16 22 C -0.09 -1.74 4.37 30.60 0.13 -1.61 16 23 C -0.12 -2.36 3.59 -10.27 -0.04 -2.40 16 24 C -0.14 -2.60 7.63 31.12 0.24 -2.37 16 25 C -0.14 -2.27 8.08 31.12 0.25 -2.02 16 26 C -0.13 -2.06 7.64 31.12 0.24 -1.82 16 27 C -0.14 -7.00 9.26 22.73 0.21 -6.79 16 28 H 0.29 13.27 8.30 -92.70 -0.77 12.50 16 29 H 0.11 5.69 6.18 -2.91 -0.02 5.67 16 30 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.13 4.58 7.59 -2.91 -0.02 4.56 16 32 H 0.42 10.70 8.84 -96.75 -0.85 9.84 16 33 H 0.04 1.16 6.19 -2.39 -0.01 1.14 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.39 6.40 9.12 -74.05 -0.68 5.73 16 36 H 0.09 1.38 7.84 -2.39 -0.02 1.36 16 37 H 0.08 1.50 7.73 -2.39 -0.02 1.48 16 38 H 0.07 1.70 7.62 -2.39 -0.02 1.69 16 39 H 0.09 1.41 7.90 -2.39 -0.02 1.39 16 40 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 45 H 0.10 5.02 7.60 -2.91 -0.02 5.00 16 Total: -1.00 -66.38 378.55 -2.71 -69.09 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.51 Total: 41.72 kcal Atomic # 6 Polarization: -78.98 SS G_CDS: 2.91 Total: -76.07 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -0.57 Total: -72.79 kcal Atomic # 8 Polarization: -95.11 SS G_CDS: -6.25 Total: -101.36 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Atomic # 16 Polarization: 100.71 SS G_CDS: -0.32 Total: 100.39 kcal Total: -66.38 -2.71 -69.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619504439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.341 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds