Wall clock time and date at job start Tue Mar 31 2020 22:49:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30819 * 1
3 3 Si 1.86799 * 119.99994 * 2 1
4 4 H 1.48505 * 109.47548 * 239.99878 * 3 2 1
5 5 H 1.48497 * 109.47447 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47136 * 120.00284 * 3 2 1
7 7 C 1.39947 * 119.99954 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99751 * 163.35212 * 7 2 1
9 9 C 1.41394 * 119.99713 * 343.35498 * 7 2 1
10 10 C 1.40732 * 120.24760 * 334.08209 * 9 7 2
11 11 C 1.37592 * 119.74794 * 180.02562 * 10 9 7
12 12 C 1.38656 * 120.24905 * 359.97438 * 11 10 9
13 13 C 1.38614 * 120.50134 * 0.02562 * 12 11 10
14 14 C 1.37644 * 120.24622 * 0.25334 * 13 12 11
15 15 S 1.76203 * 120.12376 * 179.74568 * 14 13 12
16 16 O 1.42090 * 106.40523 * 0.35609 * 15 14 13
17 17 O 1.42102 * 106.39474 * 133.27643 * 15 14 13
18 18 N 1.65603 * 107.21765 * 246.81148 * 15 14 13
19 19 C 1.46497 * 119.99918 * 63.70620 * 18 15 14
20 20 H 1.09004 * 109.46900 * 337.79272 * 19 18 15
21 21 C 1.52999 * 109.47144 * 97.79771 * 19 18 15
22 22 C 1.52996 * 109.47223 * 59.99972 * 21 19 18
23 23 C 1.53004 * 109.47205 * 59.99927 * 22 21 19
24 24 H 1.08997 * 109.46633 * 59.99716 * 23 22 21
25 25 C 1.52996 * 109.47205 * 180.02562 * 23 22 21
26 26 O 1.42901 * 109.47219 * 295.00427 * 25 23 22
27 27 C 1.52999 * 109.47089 * 300.00154 * 23 22 21
28 28 C 1.52996 * 109.47223 * 59.99856 * 27 23 22
29 29 H 0.97007 * 120.00018 * 359.97438 * 1 2 3
30 30 H 1.08002 * 120.12163 * 359.97438 * 10 9 7
31 31 H 1.08001 * 119.87723 * 180.02562 * 11 10 9
32 32 H 1.08001 * 119.75364 * 180.02562 * 12 11 10
33 33 H 1.07998 * 119.88143 * 179.97438 * 13 12 11
34 34 H 0.97001 * 120.00201 * 243.70682 * 18 15 14
35 35 H 1.09001 * 109.46743 * 180.02562 * 21 19 18
36 36 H 1.08996 * 109.46867 * 299.99803 * 21 19 18
37 37 H 1.09005 * 109.46981 * 300.00031 * 22 21 19
38 38 H 1.08997 * 109.47459 * 180.02562 * 22 21 19
39 39 H 1.09000 * 109.47147 * 54.99728 * 25 23 22
40 40 H 1.08996 * 109.47521 * 174.99624 * 25 23 22
41 41 H 0.96702 * 114.00159 * 180.02562 * 26 25 23
42 42 H 1.09005 * 109.47168 * 299.99939 * 27 23 22
43 43 H 1.08996 * 109.46867 * 180.02562 * 27 23 22
44 44 H 1.08997 * 109.47459 * 179.97438 * 28 27 23
45 45 H 1.09001 * 109.47350 * 60.00263 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2422 1.6177 0.0000
4 1 3.0960 1.6965 -1.2125
5 1 1.2773 2.7465 0.0006
6 1 3.0960 1.6964 1.2125
7 6 2.0079 -1.2120 -0.0005
8 1 3.0539 -1.2314 -0.2685
9 6 1.3453 -2.4110 0.3497
10 6 0.2178 -2.3781 1.1913
11 6 -0.4188 -3.5510 1.5259
12 6 0.0463 -4.7623 1.0369
13 6 1.1559 -4.8067 0.2072
14 6 1.8118 -3.6463 -0.1360
15 16 3.2259 -3.7071 -1.1854
16 8 3.4268 -5.0760 -1.5093
17 8 3.0415 -2.6954 -2.1661
18 7 4.5310 -3.2452 -0.2767
19 6 4.9485 -4.0553 0.8703
20 1 4.1088 -4.6599 1.2130
21 6 6.1010 -4.9718 0.4548
22 6 7.2796 -4.1232 -0.0263
23 6 7.7419 -3.2039 1.1061
24 1 8.0525 -3.8067 1.9595
25 6 8.9201 -2.3548 0.6249
26 8 10.0362 -3.2027 0.3467
27 6 6.5895 -2.2873 1.5216
28 6 5.4108 -3.1360 2.0027
29 1 -0.4850 0.8401 0.0004
30 1 -0.1458 -1.4357 1.5736
31 1 -1.2844 -3.5282 2.1713
32 1 -0.4598 -5.6781 1.3043
33 1 1.5098 -5.7557 -0.1676
34 1 5.0189 -2.4382 -0.5038
35 1 6.4113 -5.5749 1.3081
36 1 5.7716 -5.6267 -0.3519
37 1 6.9689 -3.5204 -0.8797
38 1 8.1005 -4.7761 -0.3227
39 1 8.6360 -1.8194 -0.2811
40 1 9.1923 -1.6384 1.4000
41 1 10.8212 -2.7307 0.0366
42 1 6.2787 -1.6846 0.6682
43 1 6.9190 -1.6322 2.3280
44 1 4.5900 -2.4831 2.2991
45 1 5.7214 -3.7388 2.8561
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000619573145.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:09
Heat of formation + Delta-G solvation = -132.311943 kcal
Electronic energy + Delta-G solvation = -28941.294317 eV
Core-core repulsion = 25049.107175 eV
Total energy + Delta-G solvation = -3892.187142 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-39.26300 -37.58270 -36.74937 -36.14120 -34.77857 -33.93221 -33.36554 -30.64308
-30.23584 -29.69134 -29.48917 -25.57868 -25.25127 -22.51851 -21.65272 -21.25399
-21.03927 -19.66921 -18.39581 -17.69815 -17.39913 -16.93503 -16.20352 -15.62700
-15.39316 -15.06474 -14.76230 -14.41868 -14.18250 -14.13747 -13.80939 -13.27390
-13.17597 -12.90915 -12.76841 -12.42684 -12.30487 -11.99400 -11.88321 -11.55168
-11.42778 -11.30646 -11.15868 -11.09407 -11.03394 -10.98717 -10.88867 -10.66800
-10.53881 -10.49195 -10.27425 -10.09142 -9.90488 -9.85748 -9.42247 -9.37180
-8.72114 -8.02665 -7.63644 -7.08334 -4.75480 1.58870 2.35449 2.72596
2.93178 2.95688 3.10852 3.73979 3.98246 4.08743 4.37999 4.70568
4.77791 4.81909 5.00446 5.13999 5.28736 5.31324 5.34988 5.48876
5.51726 5.61748 5.65769 5.69249 5.73054 5.83896 6.01882 6.06265
6.10890 6.23776 6.24361 6.25360 6.38038 6.43338 6.46871 6.58423
6.67105 6.77571 6.95121 7.09197 7.30629 7.47248 7.49790 7.57901
7.69053 7.81716 7.89299 8.28427 8.47951 8.65211 9.85442
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.011266 B = 0.005013 C = 0.004061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2484.827207 B = 5583.988268 C = 6892.901039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.770 5.770
2 C 0.082 3.918
3 Si 0.911 3.089
4 H -0.257 1.257
5 H -0.274 1.274
6 H -0.259 1.259
7 C -0.441 4.441
8 H 0.088 0.912
9 C 0.187 3.813
10 C -0.162 4.162
11 C -0.075 4.075
12 C -0.254 4.254
13 C -0.001 4.001
14 C -0.779 4.779
15 S 2.698 3.302
16 O -0.997 6.997
17 O -0.968 6.968
18 N -1.114 6.114
19 C 0.162 3.838
20 H 0.086 0.914
21 C -0.137 4.137
22 C -0.107 4.107
23 C -0.087 4.087
24 H 0.076 0.924
25 C 0.078 3.922
26 O -0.573 6.573
27 C -0.113 4.113
28 C -0.123 4.123
29 H 0.288 0.712
30 H 0.122 0.878
31 H 0.093 0.907
32 H 0.093 0.907
33 H 0.107 0.893
34 H 0.408 0.592
35 H 0.067 0.933
36 H 0.076 0.924
37 H 0.062 0.938
38 H 0.065 0.935
39 H 0.046 0.954
40 H 0.042 0.958
41 H 0.375 0.625
42 H 0.067 0.933
43 H 0.063 0.937
44 H 0.080 0.920
45 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.462 -0.572 4.874 13.393
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.393 5.393
2 C -0.140 4.140
3 Si 0.734 3.266
4 H -0.181 1.181
5 H -0.199 1.199
6 H -0.183 1.183
7 C -0.469 4.469
8 H 0.106 0.894
9 C 0.182 3.818
10 C -0.182 4.182
11 C -0.094 4.094
12 C -0.274 4.274
13 C -0.021 4.021
14 C -0.874 4.874
15 S 2.795 3.205
16 O -0.987 6.987
17 O -0.958 6.958
18 N -0.871 5.871
19 C 0.054 3.946
20 H 0.104 0.896
21 C -0.176 4.176
22 C -0.145 4.145
23 C -0.106 4.106
24 H 0.094 0.906
25 C 0.000 4.000
26 O -0.378 6.378
27 C -0.151 4.151
28 C -0.162 4.162
29 H 0.100 0.900
30 H 0.140 0.860
31 H 0.111 0.889
32 H 0.112 0.888
33 H 0.125 0.875
34 H 0.242 0.758
35 H 0.086 0.914
36 H 0.095 0.905
37 H 0.081 0.919
38 H 0.084 0.916
39 H 0.064 0.936
40 H 0.061 0.939
41 H 0.221 0.779
42 H 0.085 0.915
43 H 0.082 0.918
44 H 0.098 0.902
45 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 11.777 -1.280 4.175 12.560
hybrid contribution 0.289 1.727 0.398 1.795
sum 12.065 0.447 4.573 12.911
Atomic orbital electron populations
1.69800 1.07870 1.30331 1.31276 1.25963 0.94794 1.01862 0.91426
0.86288 0.80453 0.79315 0.80573 1.18077 1.19908 1.18304 1.19823
0.98268 0.91273 1.37523 0.89437 1.16959 0.89697 0.89682 0.85431
1.21452 0.98851 0.96940 1.00930 1.20875 0.97432 0.93433 0.97692
1.20467 1.02103 0.96536 1.08318 1.20256 0.93538 0.95343 0.92971
1.29825 1.26138 1.00010 1.31425 1.01171 0.73168 0.72468 0.73683
1.93445 1.86247 1.35769 1.83286 1.93543 1.85595 1.59135 1.57540
1.55794 1.48446 1.37779 1.45075 1.20557 0.96925 0.91419 0.85671
0.89606 1.22059 0.95532 0.98078 1.01932 1.21452 0.97474 0.98106
0.97433 1.21189 0.93177 0.96986 0.99203 0.90587 1.22294 0.86690
0.92264 0.98715 1.86490 1.23997 1.37949 1.89374 1.21497 0.94668
0.97700 1.01255 1.21779 0.98232 0.98728 0.97428 0.90034 0.86018
0.88921 0.88833 0.87490 0.75775 0.91426 0.90498 0.91949 0.91604
0.93600 0.93924 0.77861 0.91474 0.91817 0.90172 0.91147
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -18.68 10.98 55.55 0.61 -18.07 16
2 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16
3 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16
4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16
5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16
6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16
7 C -0.44 -10.81 7.68 -37.74 -0.29 -11.10 16
8 H 0.09 2.00 5.78 -52.49 -0.30 1.70 16
9 C 0.19 4.68 5.56 -106.83 -0.59 4.08 16
10 C -0.16 -3.95 8.68 -38.88 -0.34 -4.29 16
11 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16
12 C -0.25 -5.52 10.05 -39.29 -0.39 -5.92 16
13 C 0.00 -0.03 9.54 -39.66 -0.38 -0.41 16
14 C -0.78 -18.37 5.74 -38.87 -0.22 -18.59 16
15 S 2.70 58.42 4.87 -107.50 -0.52 57.90 16
16 O -1.00 -22.48 16.55 -57.17 -0.95 -23.43 16
17 O -0.97 -24.08 16.33 -57.17 -0.93 -25.01 16
18 N -1.11 -18.91 4.04 -4.89 -0.02 -18.93 16
19 C 0.16 2.38 3.00 -67.93 -0.20 2.18 16
20 H 0.09 1.34 7.79 -51.93 -0.40 0.93 16
21 C -0.14 -1.84 5.64 -26.73 -0.15 -1.99 16
22 C -0.11 -1.34 4.94 -26.73 -0.13 -1.47 16
23 C -0.09 -0.96 2.43 -90.62 -0.22 -1.18 16
24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
25 C 0.08 0.76 6.43 37.16 0.24 1.00 16
26 O -0.57 -5.76 13.20 -35.23 -0.46 -6.23 16
27 C -0.11 -1.27 5.01 -26.73 -0.13 -1.40 16
28 C -0.12 -1.54 5.64 -26.73 -0.15 -1.69 16
29 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16
30 H 0.12 2.98 6.23 -52.49 -0.33 2.66 16
31 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16
32 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16
33 H 0.11 2.24 7.32 -52.49 -0.38 1.85 16
34 H 0.41 6.28 6.60 -34.48 -0.23 6.05 16
35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.08 1.16 7.94 -51.93 -0.41 0.75 16
37 H 0.06 0.81 7.37 -51.93 -0.38 0.43 16
38 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16
39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16
41 H 0.38 2.08 9.12 45.56 0.42 2.49 16
42 H 0.07 0.78 6.52 -51.93 -0.34 0.44 16
43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
44 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
LS Contribution 366.28 15.07 5.52 5.52
Total: -1.00 -31.07 366.28 -10.96 -42.02
By element:
Atomic # 1 Polarization: 20.50 SS G_CDS: -5.71 Total: 14.79 kcal
Atomic # 6 Polarization: -37.55 SS G_CDS: -3.46 Total: -41.01 kcal
Atomic # 7 Polarization: -37.59 SS G_CDS: 0.59 Total: -37.00 kcal
Atomic # 8 Polarization: -52.32 SS G_CDS: -2.34 Total: -54.67 kcal
Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal
Atomic # 16 Polarization: 58.42 SS G_CDS: -0.52 Total: 57.90 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -31.07 -10.96 -42.02 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000619573145.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.289 kcal
(2) G-P(sol) polarization free energy of solvation -31.067 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.356 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds