Wall clock time and date at job start Tue Mar 31 2020 22:49:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30819 * 1
3 3 Si 1.86799 * 119.99994 * 2 1
4 4 H 1.48505 * 109.47548 * 239.99878 * 3 2 1
5 5 H 1.48497 * 109.47447 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47136 * 120.00284 * 3 2 1
7 7 C 1.39947 * 119.99954 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99751 * 163.35212 * 7 2 1
9 9 C 1.41394 * 119.99713 * 343.35498 * 7 2 1
10 10 C 1.40732 * 120.24760 * 334.08209 * 9 7 2
11 11 C 1.37592 * 119.74794 * 180.02562 * 10 9 7
12 12 C 1.38656 * 120.24905 * 359.97438 * 11 10 9
13 13 C 1.38614 * 120.50134 * 0.02562 * 12 11 10
14 14 C 1.37644 * 120.24622 * 0.25334 * 13 12 11
15 15 S 1.76203 * 120.12376 * 179.74568 * 14 13 12
16 16 O 1.42090 * 106.40523 * 0.35609 * 15 14 13
17 17 O 1.42102 * 106.39474 * 133.27643 * 15 14 13
18 18 N 1.65603 * 107.21765 * 246.81148 * 15 14 13
19 19 C 1.46497 * 119.99918 * 63.70620 * 18 15 14
20 20 H 1.09004 * 109.46900 * 337.79272 * 19 18 15
21 21 C 1.52999 * 109.47144 * 97.79771 * 19 18 15
22 22 C 1.52996 * 109.47223 * 59.99972 * 21 19 18
23 23 C 1.53004 * 109.47205 * 59.99927 * 22 21 19
24 24 H 1.08997 * 109.46633 * 59.99716 * 23 22 21
25 25 C 1.52996 * 109.47205 * 180.02562 * 23 22 21
26 26 O 1.42901 * 109.47219 * 295.00427 * 25 23 22
27 27 C 1.52999 * 109.47089 * 300.00154 * 23 22 21
28 28 C 1.52996 * 109.47223 * 59.99856 * 27 23 22
29 29 H 0.97007 * 120.00018 * 359.97438 * 1 2 3
30 30 H 1.08002 * 120.12163 * 359.97438 * 10 9 7
31 31 H 1.08001 * 119.87723 * 180.02562 * 11 10 9
32 32 H 1.08001 * 119.75364 * 180.02562 * 12 11 10
33 33 H 1.07998 * 119.88143 * 179.97438 * 13 12 11
34 34 H 0.97001 * 120.00201 * 243.70682 * 18 15 14
35 35 H 1.09001 * 109.46743 * 180.02562 * 21 19 18
36 36 H 1.08996 * 109.46867 * 299.99803 * 21 19 18
37 37 H 1.09005 * 109.46981 * 300.00031 * 22 21 19
38 38 H 1.08997 * 109.47459 * 180.02562 * 22 21 19
39 39 H 1.09000 * 109.47147 * 54.99728 * 25 23 22
40 40 H 1.08996 * 109.47521 * 174.99624 * 25 23 22
41 41 H 0.96702 * 114.00159 * 180.02562 * 26 25 23
42 42 H 1.09005 * 109.47168 * 299.99939 * 27 23 22
43 43 H 1.08996 * 109.46867 * 180.02562 * 27 23 22
44 44 H 1.08997 * 109.47459 * 179.97438 * 28 27 23
45 45 H 1.09001 * 109.47350 * 60.00263 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2422 1.6177 0.0000
4 1 3.0960 1.6965 -1.2125
5 1 1.2773 2.7465 0.0006
6 1 3.0960 1.6964 1.2125
7 6 2.0079 -1.2120 -0.0005
8 1 3.0539 -1.2314 -0.2685
9 6 1.3453 -2.4110 0.3497
10 6 0.2178 -2.3781 1.1913
11 6 -0.4188 -3.5510 1.5259
12 6 0.0463 -4.7623 1.0369
13 6 1.1559 -4.8067 0.2072
14 6 1.8118 -3.6463 -0.1360
15 16 3.2259 -3.7071 -1.1854
16 8 3.4268 -5.0760 -1.5093
17 8 3.0415 -2.6954 -2.1661
18 7 4.5310 -3.2452 -0.2767
19 6 4.9485 -4.0553 0.8703
20 1 4.1088 -4.6599 1.2130
21 6 6.1010 -4.9718 0.4548
22 6 7.2796 -4.1232 -0.0263
23 6 7.7419 -3.2039 1.1061
24 1 8.0525 -3.8067 1.9595
25 6 8.9201 -2.3548 0.6249
26 8 10.0362 -3.2027 0.3467
27 6 6.5895 -2.2873 1.5216
28 6 5.4108 -3.1360 2.0027
29 1 -0.4850 0.8401 0.0004
30 1 -0.1458 -1.4357 1.5736
31 1 -1.2844 -3.5282 2.1713
32 1 -0.4598 -5.6781 1.3043
33 1 1.5098 -5.7557 -0.1676
34 1 5.0189 -2.4382 -0.5038
35 1 6.4113 -5.5749 1.3081
36 1 5.7716 -5.6267 -0.3519
37 1 6.9689 -3.5204 -0.8797
38 1 8.1005 -4.7761 -0.3227
39 1 8.6360 -1.8194 -0.2811
40 1 9.1923 -1.6384 1.4000
41 1 10.8212 -2.7307 0.0366
42 1 6.2787 -1.6846 0.6682
43 1 6.9190 -1.6322 2.3280
44 1 4.5900 -2.4831 2.2991
45 1 5.7214 -3.7388 2.8561
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000619573145.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:08
Heat of formation + Delta-G solvation = -153.945230 kcal
Electronic energy + Delta-G solvation = -28942.232407 eV
Core-core repulsion = 25049.107175 eV
Total energy + Delta-G solvation = -3893.125232 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.28287 -39.35349 -38.00716 -37.52630 -36.62203 -35.68719 -34.50200 -32.03062
-31.62486 -31.35909 -30.75106 -27.34681 -26.19118 -23.53014 -23.40510 -22.94839
-22.11003 -20.90418 -19.85441 -19.47180 -18.55884 -18.16553 -17.82319 -17.16915
-16.87501 -16.21010 -16.01400 -15.98896 -15.44163 -15.25540 -15.07730 -14.89393
-14.77385 -14.45231 -13.86270 -13.68680 -13.54046 -13.42085 -13.26651 -13.00637
-12.98520 -12.88566 -12.82229 -12.74137 -12.47122 -12.39002 -12.21582 -12.15475
-12.03813 -11.64894 -11.48543 -11.32216 -11.13588 -11.01113 -10.96946 -10.72156
-10.12649 -9.81851 -9.45148 -8.82194 -6.58403 -0.11510 0.56052 0.99030
1.36667 1.48319 1.53711 2.15871 2.40039 2.63098 3.02740 3.38720
3.50640 3.79732 3.83240 3.91894 4.03357 4.17838 4.34199 4.36398
4.45304 4.50907 4.55867 4.56879 4.66278 4.69489 4.73858 4.81225
4.86167 4.95743 5.00089 5.14440 5.16100 5.26327 5.29493 5.30152
5.36408 5.43601 5.53373 5.56019 5.62388 5.72869 5.83072 6.02482
6.10154 6.29027 6.48949 6.67792 6.85422 6.97035 8.14628
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.011266 B = 0.005013 C = 0.004061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2484.827207 B = 5583.988268 C = 6892.901039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.802 5.802
2 C 0.040 3.960
3 Si 0.973 3.027
4 H -0.261 1.261
5 H -0.264 1.264
6 H -0.241 1.241
7 C -0.468 4.468
8 H 0.094 0.906
9 C 0.164 3.836
10 C -0.189 4.189
11 C -0.075 4.075
12 C -0.255 4.255
13 C -0.014 4.014
14 C -0.795 4.795
15 S 2.716 3.284
16 O -1.009 7.009
17 O -1.004 7.004
18 N -1.101 6.101
19 C 0.154 3.846
20 H 0.074 0.926
21 C -0.133 4.133
22 C -0.105 4.105
23 C -0.083 4.083
24 H 0.080 0.920
25 C 0.078 3.922
26 O -0.592 6.592
27 C -0.111 4.111
28 C -0.119 4.119
29 H 0.296 0.704
30 H 0.113 0.887
31 H 0.121 0.879
32 H 0.125 0.875
33 H 0.120 0.880
34 H 0.416 0.584
35 H 0.088 0.912
36 H 0.055 0.945
37 H 0.052 0.948
38 H 0.064 0.936
39 H 0.046 0.954
40 H 0.060 0.940
41 H 0.394 0.606
42 H 0.060 0.940
43 H 0.083 0.917
44 H 0.065 0.935
45 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.999 -0.150 6.207 15.314
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.426 5.426
2 C -0.179 4.179
3 Si 0.792 3.208
4 H -0.185 1.185
5 H -0.189 1.189
6 H -0.164 1.164
7 C -0.496 4.496
8 H 0.111 0.889
9 C 0.159 3.841
10 C -0.209 4.209
11 C -0.094 4.094
12 C -0.275 4.275
13 C -0.034 4.034
14 C -0.889 4.889
15 S 2.812 3.188
16 O -0.999 6.999
17 O -0.995 6.995
18 N -0.862 5.862
19 C 0.047 3.953
20 H 0.092 0.908
21 C -0.173 4.173
22 C -0.143 4.143
23 C -0.101 4.101
24 H 0.098 0.902
25 C 0.001 3.999
26 O -0.400 6.400
27 C -0.149 4.149
28 C -0.157 4.157
29 H 0.107 0.893
30 H 0.131 0.869
31 H 0.139 0.861
32 H 0.143 0.857
33 H 0.138 0.862
34 H 0.253 0.747
35 H 0.107 0.893
36 H 0.074 0.926
37 H 0.071 0.929
38 H 0.082 0.918
39 H 0.065 0.935
40 H 0.078 0.922
41 H 0.243 0.757
42 H 0.079 0.921
43 H 0.102 0.898
44 H 0.084 0.916
45 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 13.311 -0.866 5.516 14.434
hybrid contribution -0.195 1.461 -0.011 1.474
sum 13.116 0.595 5.506 14.237
Atomic orbital electron populations
1.69840 1.09193 1.31601 1.31957 1.26841 0.95539 1.04923 0.90578
0.85377 0.79376 0.75202 0.80888 1.18516 1.18852 1.16446 1.20111
0.98803 0.92019 1.38617 0.88861 1.17264 0.90345 0.90473 0.86001
1.21522 0.99799 0.97475 1.02058 1.21215 0.97818 0.92932 0.97402
1.20851 1.01634 0.97618 1.07402 1.20557 0.93946 0.95606 0.93299
1.30095 1.27331 1.00111 1.31383 1.00465 0.73339 0.71710 0.73272
1.93421 1.86484 1.36375 1.83655 1.93484 1.86406 1.60166 1.59417
1.55399 1.46830 1.38457 1.45470 1.20810 0.97071 0.91841 0.85531
0.90790 1.22021 0.95340 0.97826 1.02065 1.21426 0.96853 0.98157
0.97853 1.21135 0.93629 0.96799 0.98557 0.90159 1.22263 0.86260
0.92080 0.99309 1.86434 1.24942 1.38980 1.89599 1.21492 0.94098
0.97659 1.01672 1.21754 0.98385 0.98510 0.97095 0.89290 0.86935
0.86117 0.85722 0.86249 0.74695 0.89306 0.92584 0.92949 0.91771
0.93547 0.92188 0.75683 0.92140 0.89822 0.91629 0.88948
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -39.59 10.98 21.83 0.24 -39.35 16
2 C 0.04 1.90 5.15 85.26 0.44 2.34 16
3 Si 0.97 35.37 29.59 68.60 2.03 37.40 16
4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16
5 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16
6 H -0.24 -8.02 7.11 99.48 0.71 -7.31 16
7 C -0.47 -23.36 7.68 23.46 0.18 -23.18 16
8 H 0.09 4.35 5.78 -2.91 -0.02 4.33 16
9 C 0.16 8.35 5.56 -21.29 -0.12 8.24 16
10 C -0.19 -9.34 8.68 22.73 0.20 -9.15 16
11 C -0.08 -3.29 10.02 22.22 0.22 -3.07 16
12 C -0.25 -10.78 10.05 22.46 0.23 -10.56 16
13 C -0.01 -0.65 9.54 22.22 0.21 -0.44 16
14 C -0.80 -38.08 5.74 22.73 0.13 -37.95 16
15 S 2.72 119.76 4.87 -56.49 -0.28 119.49 16
16 O -1.01 -46.05 16.55 -128.00 -2.12 -48.17 16
17 O -1.00 -51.24 16.33 -128.00 -2.09 -53.33 16
18 N -1.10 -37.51 4.04 -169.38 -0.68 -38.20 16
19 C 0.15 4.46 3.00 44.99 0.14 4.59 16
20 H 0.07 2.31 7.79 -2.39 -0.02 2.29 16
21 C -0.13 -3.46 5.64 30.59 0.17 -3.29 16
22 C -0.11 -2.50 4.94 30.59 0.15 -2.35 16
23 C -0.08 -1.62 2.43 -10.79 -0.03 -1.65 16
24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
25 C 0.08 1.33 6.43 71.98 0.46 1.79 16
26 O -0.59 -10.50 13.20 -148.98 -1.97 -12.47 16
27 C -0.11 -2.24 5.01 30.59 0.15 -2.08 16
28 C -0.12 -2.79 5.64 30.59 0.17 -2.61 16
29 H 0.30 13.08 8.30 -92.70 -0.77 12.31 16
30 H 0.11 5.67 6.23 -2.91 -0.02 5.65 16
31 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16
32 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16
33 H 0.12 4.95 7.32 -2.91 -0.02 4.93 16
34 H 0.42 12.82 6.60 -96.74 -0.64 12.18 16
35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16
36 H 0.06 1.68 7.94 -2.39 -0.02 1.66 16
37 H 0.05 1.33 7.37 -2.38 -0.02 1.31 16
38 H 0.06 1.55 7.82 -2.39 -0.02 1.53 16
39 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16
40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16
41 H 0.39 3.43 9.12 -74.06 -0.68 2.76 16
42 H 0.06 1.30 6.52 -2.38 -0.02 1.28 16
43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
45 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16
Total: -1.00 -67.18 366.28 -2.44 -69.62
By element:
Atomic # 1 Polarization: 44.66 SS G_CDS: -0.29 Total: 44.37 kcal
Atomic # 6 Polarization: -82.08 SS G_CDS: 2.71 Total: -79.37 kcal
Atomic # 7 Polarization: -77.10 SS G_CDS: -0.44 Total: -77.55 kcal
Atomic # 8 Polarization: -107.79 SS G_CDS: -6.17 Total: -113.97 kcal
Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.40 kcal
Atomic # 16 Polarization: 119.76 SS G_CDS: -0.28 Total: 119.49 kcal
Total: -67.18 -2.44 -69.62 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000619573145.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.321 kcal
(2) G-P(sol) polarization free energy of solvation -67.180 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.501 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.625 kcal
(6) G-S(sol) free energy of system = (1) + (5) -153.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds