Wall clock time and date at job start Tue Mar 31 2020 22:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46885 * 180.02562 * 12 10 9 14 14 C 1.34231 * 116.99541 * 179.97438 * 13 12 10 15 15 O 1.20819 * 120.00095 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99481 * 180.02562 * 14 13 12 17 17 H 1.08999 * 115.55269 * 325.71276 * 16 14 13 18 18 C 1.52998 * 117.49967 * 111.39365 * 16 14 13 19 19 C 1.52999 * 60.00268 * 107.48285 * 18 16 14 20 20 H 1.08993 * 117.49982 * 252.50908 * 19 18 16 21 21 C 1.50702 * 117.49773 * 107.48582 * 19 18 16 22 22 C 1.36133 * 120.17476 * 351.38189 * 21 19 18 23 23 C 1.39333 * 120.98868 * 179.97438 * 22 21 19 24 24 C 1.36127 * 120.99202 * 0.02562 * 23 22 21 25 25 C 1.40508 * 119.64967 * 0.02562 * 24 23 22 26 26 C 1.40552 * 121.28404 * 179.97438 * 25 24 23 27 27 C 1.36097 * 119.64837 * 180.02562 * 26 25 24 28 28 C 1.39374 * 120.99448 * 0.02562 * 27 26 25 29 29 C 1.36090 * 120.99455 * 0.02562 * 28 27 26 30 30 C 1.40501 * 120.17242 * 171.10168 * 21 19 18 31 31 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 33 33 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 34 34 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 35 35 H 1.09000 * 117.49949 * 214.97442 * 18 16 14 36 36 H 1.09000 * 117.50116 * 359.97155 * 18 16 14 37 37 H 1.07998 * 119.50451 * 359.97438 * 22 21 19 38 38 H 1.07998 * 119.50209 * 179.97438 * 23 22 21 39 39 H 1.07995 * 120.17393 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.17729 * 0.04079 * 26 25 24 41 41 H 1.07999 * 119.49924 * 180.02562 * 27 26 25 42 42 H 1.08002 * 119.50506 * 179.97438 * 28 27 26 43 43 H 1.08000 * 120.17185 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 8 2.1875 -5.9665 -0.0256 14 6 1.6744 -7.2069 -0.0319 15 8 0.4767 -7.3652 -0.0327 16 6 2.5925 -8.4019 -0.0370 17 1 3.5237 -8.2771 -0.5896 18 6 2.6293 -9.2698 1.2225 19 6 1.9465 -9.7889 -0.0445 20 1 0.8577 -9.8370 -0.0457 21 6 2.6464 -10.8782 -0.8156 22 6 3.9154 -11.2437 -0.4848 23 6 4.5782 -12.2490 -1.1859 24 6 3.9764 -12.8945 -2.2224 25 6 2.6674 -12.5439 -2.5936 26 6 2.0136 -13.1874 -3.6585 27 6 0.7455 -12.8208 -3.9900 28 6 0.0829 -11.8146 -3.2894 29 6 0.6847 -11.1688 -2.2536 30 6 1.9905 -11.5260 -1.8759 31 1 -0.4849 0.8400 0.0004 32 1 0.3535 -2.3907 -0.0068 33 1 0.6169 -4.9255 0.8690 34 1 0.6176 -4.9158 -0.9109 35 1 3.5847 -9.7163 1.4983 36 1 1.9899 -8.9762 2.0549 37 1 4.4158 -10.7471 0.3333 38 1 5.5848 -12.5195 -0.9033 39 1 4.5026 -13.6714 -2.7569 40 1 2.5147 -13.9688 -4.2105 41 1 0.2453 -13.3172 -4.8084 42 1 -0.9230 -11.5426 -3.5733 43 1 0.1590 -10.3907 -1.7201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731250799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:40 Heat of formation + Delta-G solvation = -68.825799 kcal Electronic energy + Delta-G solvation = -27080.258795 eV Core-core repulsion = 23055.380667 eV Total energy + Delta-G solvation = -4024.878128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01311 -41.33404 -40.13894 -38.75711 -37.49163 -36.72481 -36.05932 -33.46793 -33.41036 -31.21271 -30.43741 -29.90051 -26.99620 -25.70288 -25.01503 -24.04818 -23.57471 -21.83985 -21.46583 -20.80730 -20.10160 -19.20743 -18.33285 -18.01832 -17.92884 -17.72810 -17.24712 -17.15609 -16.52205 -15.92890 -15.84583 -15.56737 -15.35993 -14.89728 -14.73556 -14.61022 -14.35467 -14.13778 -13.96767 -13.81446 -13.58090 -13.35492 -12.95681 -12.90511 -12.77510 -12.52419 -12.49183 -12.12850 -12.04428 -11.92264 -11.88078 -11.65763 -11.60130 -11.58759 -11.51510 -10.64827 -10.53695 -10.14347 -9.52880 -8.73464 -8.54275 -6.05185 -0.42753 0.09863 0.86996 1.06862 1.32555 1.34681 1.43644 1.56556 1.83945 2.07906 2.28224 2.68774 2.96471 3.10930 3.20672 3.40610 3.49739 3.66361 3.72586 3.92648 3.93416 4.01259 4.07412 4.10796 4.14027 4.16503 4.18574 4.34933 4.47479 4.51180 4.60184 4.69858 4.82287 4.90140 4.94844 5.05711 5.24897 5.25978 5.31463 5.35211 5.37636 5.54255 5.63734 5.72609 5.86512 5.93591 6.11519 6.42599 6.58436 7.00470 7.36797 7.90295 8.62710 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020939 B = 0.001893 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.922875 B =14785.241476 C =15300.669955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.071 3.929 13 O -0.340 6.340 14 C 0.489 3.511 15 O -0.531 6.531 16 C -0.165 4.165 17 H 0.146 0.854 18 C -0.117 4.117 19 C -0.078 4.078 20 H 0.119 0.881 21 C -0.060 4.060 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.072 4.072 26 C -0.111 4.111 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.128 4.128 30 C -0.062 4.062 31 H 0.281 0.719 32 H 0.400 0.600 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.145 0.855 36 H 0.112 0.888 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.136 0.864 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 -29.083 -3.489 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.505 6.505 12 C -0.006 4.006 13 O -0.255 6.255 14 C 0.334 3.666 15 O -0.421 6.421 16 C -0.184 4.184 17 H 0.164 0.836 18 C -0.154 4.154 19 C -0.096 4.096 20 H 0.137 0.863 21 C -0.060 4.060 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.072 4.072 26 C -0.129 4.129 27 C -0.142 4.142 28 C -0.141 4.141 29 C -0.146 4.146 30 C -0.062 4.062 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.162 0.838 36 H 0.130 0.870 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.333 -28.926 -3.484 29.325 hybrid contribution -0.720 1.304 -0.112 1.494 sum 2.613 -27.622 -3.596 27.978 Atomic orbital electron populations 1.69672 1.06962 1.29784 1.49047 1.26161 0.96623 1.02656 0.95599 0.84836 0.77899 0.76231 0.78817 1.19441 1.19338 1.19492 1.19729 0.92959 0.83343 1.50741 0.89746 1.41743 1.09562 1.04183 1.63939 1.20086 0.88076 0.85372 0.84232 1.90525 1.15453 1.87689 1.56801 1.22540 0.90198 0.82575 1.05330 1.86546 1.40727 1.14947 1.83285 1.23243 0.88081 0.84016 0.71306 1.90623 1.17533 1.86822 1.47096 1.21941 1.01267 0.86281 1.08945 0.83606 1.23465 1.04645 0.97294 0.89947 1.21078 0.99720 0.88943 0.99820 0.86348 1.18903 0.95036 0.96274 0.95777 1.21101 0.93749 0.97798 1.00571 1.21169 1.01164 0.95662 0.95549 1.21385 0.93336 1.00362 0.97726 1.18411 0.95439 0.96537 0.96794 1.21374 0.95379 0.99918 0.96215 1.21193 0.95355 0.97315 1.00308 1.21172 1.00946 0.96357 0.95650 1.21257 0.94586 1.00287 0.98482 1.18117 0.94826 0.96984 0.96265 0.90917 0.76549 0.87431 0.87740 0.83755 0.86964 0.83602 0.83095 0.83068 0.83030 0.83572 0.84635 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.82 13.05 21.67 0.28 -48.53 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 42.22 29.55 68.60 2.03 44.24 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 8 H 0.08 5.07 7.16 -2.91 -0.02 5.04 16 9 N -0.56 -28.98 5.29 -306.97 -1.62 -30.60 16 10 C 0.44 21.74 7.86 87.66 0.69 22.43 16 11 O -0.62 -35.83 16.08 15.73 0.25 -35.58 16 12 C 0.07 2.75 5.94 71.24 0.42 3.17 16 13 O -0.34 -13.07 9.76 -45.07 -0.44 -13.51 16 14 C 0.49 15.68 7.74 71.24 0.55 16.23 16 15 O -0.53 -18.44 16.01 21.98 0.35 -18.09 16 16 C -0.17 -3.90 5.93 -11.54 -0.07 -3.97 16 17 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 18 C -0.12 -1.98 9.56 30.59 0.29 -1.68 16 19 C -0.08 -1.59 4.99 -11.54 -0.06 -1.65 16 20 H 0.12 2.69 6.18 -2.39 -0.01 2.68 16 21 C -0.06 -1.18 5.62 -19.80 -0.11 -1.29 16 22 C -0.11 -1.77 9.23 22.04 0.20 -1.57 16 23 C -0.12 -1.55 9.95 22.04 0.22 -1.33 16 24 C -0.11 -1.56 9.77 22.33 0.22 -1.34 16 25 C -0.07 -1.32 5.74 -21.29 -0.12 -1.44 16 26 C -0.11 -1.66 9.77 22.34 0.22 -1.45 16 27 C -0.12 -1.86 9.95 22.05 0.22 -1.64 16 28 C -0.12 -2.22 9.95 22.04 0.22 -2.00 16 29 C -0.13 -2.77 9.35 22.33 0.21 -2.56 16 30 C -0.06 -1.33 5.74 -21.30 -0.12 -1.46 16 31 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.40 19.59 7.90 -92.71 -0.73 18.85 16 33 H 0.11 3.72 8.13 -2.38 -0.02 3.70 16 34 H 0.10 3.68 8.13 -2.39 -0.02 3.66 16 35 H 0.14 1.56 6.18 -2.39 -0.01 1.55 16 36 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.15 1.58 5.96 -2.91 -0.02 1.56 16 38 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.12 2.70 6.38 -2.91 -0.02 2.68 16 Total: -1.00 -73.61 374.23 5.45 -68.15 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.34 Total: 33.88 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.26 Total: 0.04 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -1.34 Total: -79.14 kcal Atomic # 8 Polarization: -67.34 SS G_CDS: 0.17 Total: -67.18 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -73.61 5.45 -68.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731250799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.672 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds