Wall clock time and date at job start Tue Mar 31 2020 22:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 O 1.45200 * 109.46872 * 180.02562 * 12 10 9 14 14 C 1.34234 * 116.99591 * 180.02562 * 13 12 10 15 15 O 1.20827 * 119.99980 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99736 * 180.02562 * 14 13 12 17 17 H 1.08998 * 115.55655 * 34.27322 * 16 14 13 18 18 C 1.53005 * 117.49438 * 248.60436 * 16 14 13 19 19 C 1.52998 * 60.00058 * 252.50782 * 18 16 14 20 20 H 1.08997 * 117.50304 * 252.51022 * 19 18 16 21 21 C 1.50707 * 117.49225 * 107.49002 * 19 18 16 22 22 C 1.36123 * 120.17583 * 351.10297 * 21 19 18 23 23 C 1.39331 * 120.99320 * 179.72162 * 22 21 19 24 24 C 1.36123 * 120.98857 * 0.56018 * 23 22 21 25 25 C 1.40508 * 119.64929 * 359.72765 * 24 23 22 26 26 C 1.40546 * 121.27823 * 179.97438 * 25 24 23 27 27 C 1.36088 * 119.65264 * 180.02562 * 26 25 24 28 28 C 1.39388 * 120.98668 * 359.97438 * 27 26 25 29 29 C 1.36088 * 120.99981 * 0.02562 * 28 27 26 30 30 C 1.40509 * 120.17033 * 171.38123 * 21 19 18 31 31 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 34 34 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 35 35 H 1.08989 * 117.50327 * 0.02562 * 18 16 14 36 36 H 1.09008 * 117.49320 * 145.02587 * 18 16 14 37 37 H 1.08008 * 119.50058 * 359.97438 * 22 21 19 38 38 H 1.08005 * 119.50919 * 180.31001 * 23 22 21 39 39 H 1.08002 * 120.17924 * 179.75054 * 24 23 22 40 40 H 1.07994 * 120.17718 * 359.97438 * 26 25 24 41 41 H 1.07993 * 119.51005 * 180.02562 * 27 26 25 42 42 H 1.08003 * 119.49874 * 180.02562 * 28 27 26 43 43 H 1.07996 * 120.17142 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 8 2.1874 -5.9665 0.0027 14 6 1.6744 -7.2070 0.0027 15 8 0.4765 -7.3653 0.0028 16 6 2.5924 -8.4020 0.0038 17 1 3.5228 -8.2797 0.5582 18 6 2.6310 -9.2642 -1.2596 19 6 1.9465 -9.7890 0.0041 20 1 2.4519 -10.5794 0.5590 21 6 0.4409 -9.8555 0.0033 22 6 -0.2682 -9.2934 -1.0136 23 6 -1.6603 -9.3498 -1.0345 24 6 -2.3521 -9.9589 -0.0328 25 6 -1.6547 -10.5453 1.0368 26 6 -2.3344 -11.1824 2.0892 27 6 -1.6258 -11.7390 3.1091 28 6 -0.2330 -11.6879 3.1268 29 6 0.4589 -11.0796 2.1252 30 6 -0.2384 -10.4929 1.0552 31 1 -0.4850 0.8401 0.0004 32 1 0.3534 -2.3906 0.0024 33 1 0.6175 -4.9205 0.8924 34 1 0.6169 -4.9209 -0.8876 35 1 1.9928 -8.9669 -2.0916 36 1 3.5869 -9.7095 -1.5360 37 1 0.2562 -8.7998 -1.8185 38 1 -2.1987 -8.9002 -1.8557 39 1 -3.4313 -9.9915 -0.0601 40 1 -3.4133 -11.2293 2.0890 41 1 -2.1504 -12.2283 3.9163 42 1 0.3053 -12.1379 3.9479 43 1 1.5380 -11.0474 2.1526 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731250801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:47 Heat of formation + Delta-G solvation = -38.606776 kcal Electronic energy + Delta-G solvation = -27984.281372 eV Core-core repulsion = 23960.713640 eV Total energy + Delta-G solvation = -4023.567732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12174 -40.04988 -38.40004 -37.52726 -36.07296 -35.73192 -33.99533 -32.58416 -31.37833 -30.34721 -29.24409 -28.52669 -25.34818 -24.32379 -24.05156 -23.22572 -22.75851 -20.88497 -19.77391 -19.54734 -18.11261 -18.01068 -17.47821 -16.89397 -16.47706 -16.25684 -15.98001 -15.57738 -15.07200 -14.61652 -14.31917 -14.20371 -13.95684 -13.95011 -13.75719 -13.58721 -13.38299 -13.07905 -12.71087 -12.34094 -12.12841 -11.99458 -11.89063 -11.70831 -11.60261 -11.12015 -11.08712 -10.94515 -10.79988 -10.71393 -10.49041 -10.35959 -10.31651 -10.25172 -9.61431 -9.59346 -8.54096 -8.51199 -8.08056 -7.71572 -6.49662 -3.91773 0.46642 1.02876 1.89256 2.26741 2.68286 2.99828 3.15520 3.22677 3.27447 3.56512 3.74598 4.04997 4.10462 4.26962 4.43851 4.56413 4.62275 4.74555 4.77203 4.81584 4.89900 5.01216 5.09444 5.14642 5.15472 5.30865 5.32519 5.36898 5.48226 5.51041 5.61758 5.67570 5.70124 5.71135 5.92253 6.06359 6.07270 6.18075 6.20332 6.37308 6.53705 6.61188 6.68384 6.78360 6.99201 7.47749 7.88927 7.99769 8.49127 9.07278 9.39707 9.89862 10.67539 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.002311 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.977483 B =12115.383065 C =12675.278305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.063 3.937 13 O -0.323 6.323 14 C 0.480 3.520 15 O -0.495 6.495 16 C -0.152 4.152 17 H 0.141 0.859 18 C -0.142 4.142 19 C -0.083 4.083 20 H 0.128 0.872 21 C -0.048 4.048 22 C -0.053 4.053 23 C -0.110 4.110 24 C -0.109 4.109 25 C -0.057 4.057 26 C -0.104 4.104 27 C -0.126 4.126 28 C -0.121 4.121 29 C -0.109 4.109 30 C -0.033 4.033 31 H 0.274 0.726 32 H 0.395 0.605 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -24.867 0.746 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.209 1.209 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.238 6.238 14 C 0.323 3.677 15 O -0.383 6.383 16 C -0.171 4.171 17 H 0.159 0.841 18 C -0.179 4.179 19 C -0.101 4.101 20 H 0.145 0.855 21 C -0.048 4.048 22 C -0.071 4.071 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.057 4.057 26 C -0.122 4.122 27 C -0.144 4.144 28 C -0.139 4.139 29 C -0.127 4.127 30 C -0.033 4.033 31 H 0.084 0.916 32 H 0.228 0.772 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.132 -24.692 0.745 24.901 hybrid contribution -0.414 1.136 0.145 1.218 sum -3.546 -23.556 0.891 23.838 Atomic orbital electron populations 1.69608 1.06000 1.28579 1.49638 1.25313 0.95686 0.99859 0.96890 0.85858 0.78753 0.80076 0.79201 1.20862 1.19743 1.19750 1.19676 0.93445 0.81782 1.48289 0.87683 1.41700 1.09351 1.04092 1.63878 1.19336 0.88336 0.84098 0.85915 1.90558 1.13438 1.86804 1.55220 1.22715 0.90826 0.84593 1.03347 1.86536 1.40369 1.14110 1.82753 1.22627 0.87827 0.84264 0.72962 1.90748 1.16303 1.86090 1.45185 1.21816 1.01370 0.87851 1.06069 0.84089 1.23244 1.03270 1.00191 0.91175 1.21153 0.92171 0.94857 1.01886 0.85458 1.18581 0.92249 0.99327 0.94629 1.20471 0.93915 0.95077 0.97598 1.20744 0.94152 0.99036 0.98918 1.20946 0.99400 0.98561 0.93801 1.18000 0.92489 0.99469 0.95719 1.20997 0.99543 0.97798 0.93813 1.20785 0.94288 1.00618 0.98716 1.20803 0.94363 0.99943 0.98748 1.21026 0.99730 0.97987 0.93937 1.17754 0.92445 0.98323 0.94741 0.91578 0.77174 0.89662 0.89686 0.87547 0.86511 0.86748 0.86216 0.85938 0.85877 0.86326 0.86279 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -14.15 5.29 -10.96 -0.06 -14.20 16 10 C 0.44 10.73 7.86 -10.98 -0.09 10.64 16 11 O -0.58 -16.23 16.08 -14.11 -0.23 -16.45 16 12 C 0.06 1.22 5.94 36.01 0.21 1.43 16 13 O -0.32 -6.11 9.76 -45.91 -0.45 -6.56 16 14 C 0.48 7.53 7.58 36.00 0.27 7.80 16 15 O -0.49 -8.28 11.45 -18.75 -0.21 -8.49 16 16 C -0.15 -1.73 6.30 -91.77 -0.58 -2.31 16 17 H 0.14 1.38 8.14 -51.93 -0.42 0.96 16 18 C -0.14 -1.24 9.57 -26.73 -0.26 -1.49 16 19 C -0.08 -0.81 5.48 -91.77 -0.50 -1.31 16 20 H 0.13 0.93 6.65 -51.93 -0.35 0.59 16 21 C -0.05 -0.58 4.41 -104.52 -0.46 -1.04 16 22 C -0.05 -0.65 6.12 -39.94 -0.24 -0.90 16 23 C -0.11 -1.31 9.95 -39.93 -0.40 -1.70 16 24 C -0.11 -1.25 9.77 -39.49 -0.39 -1.64 16 25 C -0.06 -0.69 5.74 -106.83 -0.61 -1.31 16 26 C -0.10 -1.07 9.77 -39.48 -0.39 -1.45 16 27 C -0.13 -1.19 9.95 -39.93 -0.40 -1.58 16 28 C -0.12 -1.15 9.95 -39.93 -0.40 -1.54 16 29 C -0.11 -1.15 9.35 -39.49 -0.37 -1.52 16 30 C -0.03 -0.41 5.74 -106.83 -0.61 -1.02 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 33 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16 34 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 35 H 0.11 0.96 6.19 -51.93 -0.32 0.64 16 36 H 0.12 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.11 1.35 5.66 -52.48 -0.30 1.05 16 38 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.12 1.05 6.38 -52.49 -0.33 0.72 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -33.85 366.24 -10.10 -43.95 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.94 Total: 10.91 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -5.44 Total: -6.95 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.67 Total: -37.72 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.89 Total: -31.51 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.85 -10.10 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731250801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.345 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds