Wall clock time and date at job start Tue Mar 31 2020 22:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 O 1.45200 * 109.46872 * 180.02562 * 12 10 9 14 14 C 1.34234 * 116.99591 * 180.02562 * 13 12 10 15 15 O 1.20827 * 119.99980 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99736 * 180.02562 * 14 13 12 17 17 H 1.08998 * 115.55655 * 34.27322 * 16 14 13 18 18 C 1.53005 * 117.49438 * 248.60436 * 16 14 13 19 19 C 1.52998 * 60.00058 * 252.50782 * 18 16 14 20 20 H 1.08997 * 117.50304 * 252.51022 * 19 18 16 21 21 C 1.50707 * 117.49225 * 107.49002 * 19 18 16 22 22 C 1.36123 * 120.17583 * 351.10297 * 21 19 18 23 23 C 1.39331 * 120.99320 * 179.72162 * 22 21 19 24 24 C 1.36123 * 120.98857 * 0.56018 * 23 22 21 25 25 C 1.40508 * 119.64929 * 359.72765 * 24 23 22 26 26 C 1.40546 * 121.27823 * 179.97438 * 25 24 23 27 27 C 1.36088 * 119.65264 * 180.02562 * 26 25 24 28 28 C 1.39388 * 120.98668 * 359.97438 * 27 26 25 29 29 C 1.36088 * 120.99981 * 0.02562 * 28 27 26 30 30 C 1.40509 * 120.17033 * 171.38123 * 21 19 18 31 31 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 34 34 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 35 35 H 1.08989 * 117.50327 * 0.02562 * 18 16 14 36 36 H 1.09008 * 117.49320 * 145.02587 * 18 16 14 37 37 H 1.08008 * 119.50058 * 359.97438 * 22 21 19 38 38 H 1.08005 * 119.50919 * 180.31001 * 23 22 21 39 39 H 1.08002 * 120.17924 * 179.75054 * 24 23 22 40 40 H 1.07994 * 120.17718 * 359.97438 * 26 25 24 41 41 H 1.07993 * 119.51005 * 180.02562 * 27 26 25 42 42 H 1.08003 * 119.49874 * 180.02562 * 28 27 26 43 43 H 1.07996 * 120.17142 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 8 2.1874 -5.9665 0.0027 14 6 1.6744 -7.2070 0.0027 15 8 0.4765 -7.3653 0.0028 16 6 2.5924 -8.4020 0.0038 17 1 3.5228 -8.2797 0.5582 18 6 2.6310 -9.2642 -1.2596 19 6 1.9465 -9.7890 0.0041 20 1 2.4519 -10.5794 0.5590 21 6 0.4409 -9.8555 0.0033 22 6 -0.2682 -9.2934 -1.0136 23 6 -1.6603 -9.3498 -1.0345 24 6 -2.3521 -9.9589 -0.0328 25 6 -1.6547 -10.5453 1.0368 26 6 -2.3344 -11.1824 2.0892 27 6 -1.6258 -11.7390 3.1091 28 6 -0.2330 -11.6879 3.1268 29 6 0.4589 -11.0796 2.1252 30 6 -0.2384 -10.4929 1.0552 31 1 -0.4850 0.8401 0.0004 32 1 0.3534 -2.3906 0.0024 33 1 0.6175 -4.9205 0.8924 34 1 0.6169 -4.9209 -0.8876 35 1 1.9928 -8.9669 -2.0916 36 1 3.5869 -9.7095 -1.5360 37 1 0.2562 -8.7998 -1.8185 38 1 -2.1987 -8.9002 -1.8557 39 1 -3.4313 -9.9915 -0.0601 40 1 -3.4133 -11.2293 2.0890 41 1 -2.1504 -12.2283 3.9163 42 1 0.3053 -12.1379 3.9479 43 1 1.5380 -11.0474 2.1526 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731250801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:46 Heat of formation + Delta-G solvation = -56.372442 kcal Electronic energy + Delta-G solvation = -27985.051750 eV Core-core repulsion = 23960.713640 eV Total energy + Delta-G solvation = -4024.338110 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13249 -41.11652 -40.11570 -38.69281 -37.10016 -36.79077 -36.05330 -33.45404 -33.36459 -31.14103 -30.37168 -29.83816 -26.96997 -25.60673 -25.00851 -23.99929 -23.53299 -21.88846 -21.44935 -20.73669 -20.09654 -19.09072 -18.29523 -17.99494 -17.79169 -17.63122 -17.19424 -16.89931 -16.42597 -15.99077 -15.80933 -15.53122 -15.12219 -15.09004 -14.67960 -14.58180 -14.30490 -14.14736 -13.97925 -13.73550 -13.58272 -13.41667 -12.95234 -12.86016 -12.73055 -12.51785 -12.48303 -12.13857 -11.88928 -11.85691 -11.69686 -11.62918 -11.59149 -11.46008 -11.31396 -10.56312 -10.42824 -10.14636 -9.37531 -8.54902 -8.53480 -6.05458 -0.33492 0.20163 0.95856 1.23462 1.36076 1.36464 1.44555 1.55335 1.84430 2.17943 2.28330 2.76994 3.00955 3.10923 3.24473 3.46658 3.66888 3.73051 3.78681 3.96266 3.98114 4.07965 4.08848 4.12171 4.18148 4.18735 4.29334 4.37440 4.55863 4.57486 4.65127 4.78419 4.83592 4.93021 4.99753 5.12575 5.31225 5.33752 5.37737 5.40784 5.41958 5.60943 5.70670 5.79124 5.86554 6.00908 6.20393 6.43674 6.71362 7.00273 7.36852 7.90303 8.62528 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.002311 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.977483 B =12115.383065 C =12675.278305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.076 3.924 13 O -0.345 6.345 14 C 0.475 3.525 15 O -0.508 6.508 16 C -0.169 4.169 17 H 0.158 0.842 18 C -0.125 4.125 19 C -0.076 4.076 20 H 0.156 0.844 21 C -0.059 4.059 22 C -0.072 4.072 23 C -0.129 4.129 24 C -0.118 4.118 25 C -0.081 4.081 26 C -0.117 4.117 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.122 4.122 30 C -0.056 4.056 31 H 0.281 0.719 32 H 0.399 0.601 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.150 0.850 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 -26.050 1.425 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.002 4.002 13 O -0.261 6.261 14 C 0.320 3.680 15 O -0.397 6.397 16 C -0.187 4.187 17 H 0.176 0.824 18 C -0.161 4.161 19 C -0.094 4.094 20 H 0.173 0.827 21 C -0.059 4.059 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.136 4.136 25 C -0.081 4.081 26 C -0.135 4.135 27 C -0.146 4.146 28 C -0.141 4.141 29 C -0.140 4.140 30 C -0.056 4.056 31 H 0.091 0.909 32 H 0.234 0.766 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.168 0.832 37 H 0.131 0.869 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.973 -25.897 1.422 26.106 hybrid contribution -0.553 1.401 -0.026 1.507 sum -3.526 -24.496 1.396 24.788 Atomic orbital electron populations 1.69671 1.07004 1.29847 1.49052 1.26157 0.96597 1.02655 0.95561 0.84904 0.77751 0.75994 0.79201 1.19315 1.19443 1.19382 1.19697 0.92958 0.83368 1.50837 0.89735 1.41747 1.09518 1.04231 1.63998 1.20111 0.88080 0.85392 0.84143 1.90518 1.15444 1.87707 1.56793 1.22414 0.90177 0.82754 1.04819 1.86547 1.40834 1.15144 1.83541 1.23515 0.88523 0.83957 0.72054 1.90753 1.17168 1.85975 1.45787 1.21979 1.01454 0.86461 1.08856 0.82446 1.23450 1.04462 0.98082 0.90104 1.21327 0.91049 0.94197 1.02806 0.82664 1.18873 0.93622 0.99027 0.94412 1.20604 0.94355 0.95886 0.98133 1.20977 0.94391 0.99645 0.99648 1.21220 1.00429 0.98295 0.93615 1.18362 0.93011 1.00152 0.96578 1.21280 1.00663 0.97848 0.93678 1.21174 0.94615 0.99860 0.98944 1.21195 0.94697 0.99147 0.99042 1.21307 1.00849 0.98087 0.93746 1.18087 0.92926 0.99035 0.95575 0.90914 0.76640 0.88312 0.87851 0.88172 0.83183 0.86925 0.85238 0.84157 0.84123 0.83785 0.83708 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 3 Si 1.00 42.28 29.55 68.60 2.03 44.31 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.34 -19.31 9.68 84.04 0.81 -18.49 16 8 H 0.08 5.07 7.16 -2.92 -0.02 5.05 16 9 N -0.56 -29.20 5.29 -306.98 -1.62 -30.83 16 10 C 0.44 21.85 7.86 87.66 0.69 22.54 16 11 O -0.62 -35.85 16.08 15.74 0.25 -35.60 16 12 C 0.08 2.97 5.94 71.24 0.42 3.39 16 13 O -0.34 -13.13 9.76 -45.10 -0.44 -13.57 16 14 C 0.48 14.77 7.58 71.23 0.54 15.31 16 15 O -0.51 -17.05 11.45 21.96 0.25 -16.80 16 16 C -0.17 -3.59 6.30 -11.54 -0.07 -3.66 16 17 H 0.16 2.79 8.14 -2.39 -0.02 2.77 16 18 C -0.12 -1.91 9.57 30.60 0.29 -1.62 16 19 C -0.08 -1.34 5.48 -11.54 -0.06 -1.40 16 20 H 0.16 1.80 6.65 -2.39 -0.02 1.78 16 21 C -0.06 -1.41 4.41 -19.80 -0.09 -1.49 16 22 C -0.07 -1.81 6.12 22.04 0.13 -1.67 16 23 C -0.13 -3.11 9.95 22.04 0.22 -2.89 16 24 C -0.12 -2.71 9.77 22.33 0.22 -2.50 16 25 C -0.08 -1.95 5.74 -21.30 -0.12 -2.07 16 26 C -0.12 -2.27 9.77 22.33 0.22 -2.06 16 27 C -0.13 -2.15 9.95 22.05 0.22 -1.93 16 28 C -0.12 -2.06 9.95 22.05 0.22 -1.84 16 29 C -0.12 -2.37 9.35 22.33 0.21 -2.17 16 30 C -0.06 -1.36 5.74 -21.30 -0.12 -1.48 16 31 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 33 H 0.10 3.58 8.13 -2.39 -0.02 3.56 16 34 H 0.10 3.64 8.13 -2.39 -0.02 3.62 16 35 H 0.10 1.69 6.19 -2.39 -0.01 1.68 16 36 H 0.15 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.11 2.72 5.66 -2.91 -0.02 2.71 16 38 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 41 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.14 2.07 6.38 -2.91 -0.02 2.05 16 Total: -1.00 -74.51 366.24 5.28 -69.23 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.34 Total: 36.17 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.20 Total: -4.05 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -1.34 Total: -79.70 kcal Atomic # 8 Polarization: -66.03 SS G_CDS: 0.06 Total: -65.96 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -74.51 5.28 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731250801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.854 kcal (2) G-P(sol) polarization free energy of solvation -74.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds