Wall clock time and date at job start Tue Mar 31 2020 22:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48501 * 109.47010 * 275.72941 * 3 2 1 5 5 H 1.48502 * 109.47221 * 35.72991 * 3 2 1 6 6 H 1.48497 * 109.46759 * 155.73023 * 3 2 1 7 7 C 1.38954 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00010 * 337.72479 * 7 2 1 9 9 N 1.37097 * 119.99585 * 157.72191 * 7 2 1 10 10 C 1.46499 * 120.00105 * 322.62281 * 9 7 2 11 11 C 1.50702 * 109.46852 * 264.13688 * 10 9 7 12 12 O 1.20819 * 120.00104 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99616 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99940 * 142.62155 * 9 7 2 15 15 O 1.21293 * 119.99954 * 359.97438 * 14 9 7 16 16 C 1.50697 * 120.00206 * 180.02562 * 14 9 7 17 17 H 1.08996 * 115.55062 * 34.27334 * 16 14 9 18 18 C 1.53007 * 117.49721 * 248.60934 * 16 14 9 19 19 C 1.52999 * 117.49801 * 179.97438 * 16 14 9 20 20 H 1.09000 * 117.49644 * 214.97341 * 19 16 14 21 21 C 1.50702 * 117.50059 * 359.97438 * 19 16 14 22 22 C 1.36126 * 120.16952 * 60.00299 * 21 19 16 23 23 C 1.39330 * 120.98238 * 179.97438 * 22 21 19 24 24 C 1.36122 * 120.99647 * 359.97438 * 23 22 21 25 25 C 1.40506 * 119.65000 * 359.97438 * 24 23 22 26 26 C 1.40551 * 121.28865 * 179.97438 * 25 24 23 27 27 C 1.36086 * 119.65008 * 180.02562 * 26 25 24 28 28 C 1.39382 * 120.99820 * 359.97438 * 27 26 25 29 29 C 1.36091 * 120.98748 * 0.04603 * 28 27 26 30 30 C 1.40504 * 120.17350 * 239.72282 * 21 19 16 31 31 H 0.96995 * 120.00371 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46750 * 144.13791 * 10 9 7 33 33 H 1.08998 * 109.47082 * 24.13859 * 10 9 7 34 34 H 0.96704 * 116.99512 * 180.02562 * 13 11 10 35 35 H 1.09005 * 117.49695 * 359.97438 * 18 16 14 36 36 H 1.08996 * 117.49748 * 145.01759 * 18 16 14 37 37 H 1.07991 * 119.50751 * 359.97438 * 22 21 19 38 38 H 1.08007 * 119.50212 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.17757 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.17275 * 359.97438 * 26 25 24 41 41 H 1.08000 * 119.49997 * 179.97438 * 27 26 25 42 42 H 1.07997 * 119.50550 * 180.02562 * 28 27 26 43 43 H 1.07999 * 120.17054 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3745 2.1163 -1.3931 5 1 1.5113 2.6147 0.8176 6 1 3.6009 1.4083 0.5755 7 6 2.0089 -1.2034 0.0005 8 1 1.5293 -2.1036 0.3555 9 7 3.3031 -1.2478 -0.4496 10 6 3.7091 -0.4286 -1.5942 11 6 3.6423 -1.2553 -2.8524 12 8 3.2911 -2.4101 -2.7986 13 8 3.9730 -0.7086 -4.0330 14 6 4.2019 -2.0452 0.1610 15 8 3.8659 -2.7231 1.1090 16 6 5.6247 -2.0937 -0.3333 17 1 6.0191 -1.1553 -0.7231 18 6 6.0985 -3.3888 -0.9961 19 6 6.5970 -3.0179 0.4024 20 1 7.6315 -2.6876 0.4966 21 6 6.0589 -3.8097 1.5662 22 6 5.0378 -4.6906 1.3806 23 6 4.5276 -5.4317 2.4445 24 6 5.0356 -5.2968 3.7002 25 6 6.0907 -4.3979 3.9303 26 6 6.6408 -4.2310 5.2128 27 6 7.6619 -3.3507 5.3980 28 6 8.1731 -2.6100 4.3337 29 6 7.6653 -2.7450 3.0783 30 6 6.6123 -3.6467 2.8474 31 1 -0.4850 0.8400 0.0004 32 1 4.7297 -0.0760 -1.4448 33 1 3.0390 0.4262 -1.6851 34 1 3.9141 -1.2782 -4.8123 35 1 5.3812 -4.2059 -1.0742 36 1 6.8050 -3.3024 -1.8216 37 1 4.6170 -4.8169 0.3942 38 1 3.7168 -6.1236 2.2702 39 1 4.6303 -5.8782 4.5151 40 1 6.2547 -4.7978 6.0471 41 1 8.0826 -3.2240 6.3847 42 1 8.9841 -1.9184 4.5079 43 1 8.0717 -2.1648 2.2631 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739076743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:36 Heat of formation + Delta-G solvation = -19.227034 kcal Electronic energy + Delta-G solvation = -29756.076082 eV Core-core repulsion = 25733.348718 eV Total energy + Delta-G solvation = -4022.727364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53620 -39.88529 -38.84679 -36.84625 -35.70019 -35.49049 -34.64777 -32.31086 -31.99041 -29.93467 -28.74881 -28.08460 -25.94366 -23.82178 -22.88903 -22.80598 -22.31286 -21.74305 -20.00671 -18.42926 -17.79161 -17.41136 -17.28087 -16.99585 -16.36755 -16.02887 -15.93152 -15.38920 -14.94770 -14.63078 -14.20791 -13.89177 -13.59225 -13.57769 -13.31432 -13.09654 -12.93613 -12.73683 -12.67847 -12.48413 -12.38777 -11.82997 -11.64299 -11.54523 -11.15402 -11.13637 -10.99917 -10.72932 -10.59113 -10.45862 -10.30779 -10.16088 -10.13579 -9.96486 -9.37281 -9.15742 -8.64109 -8.12718 -7.89462 -7.17681 -6.48016 -4.05780 0.88129 1.44026 2.37050 2.66802 2.91418 3.06267 3.16556 3.19790 3.37508 3.62014 4.02544 4.19230 4.22976 4.51482 4.78578 4.87714 4.97117 5.09258 5.13404 5.15455 5.22249 5.24873 5.31627 5.42617 5.45252 5.55245 5.64869 5.68362 5.75500 5.78855 5.87048 5.94326 6.01347 6.05930 6.21072 6.34416 6.48240 6.59778 6.61077 6.72183 6.85315 6.97760 7.10035 7.18493 7.41000 7.43740 8.18712 8.30353 8.41176 8.86435 9.19138 9.63648 10.63916 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.004156 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.522806 B = 6735.666958 C = 7334.356331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.059 3.941 3 Si 0.859 3.141 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.311 4.311 8 H 0.108 0.892 9 N -0.447 5.447 10 C 0.099 3.901 11 C 0.458 3.542 12 O -0.491 6.491 13 O -0.527 6.527 14 C 0.505 3.495 15 O -0.526 6.526 16 C -0.178 4.178 17 H 0.115 0.885 18 C -0.148 4.148 19 C -0.088 4.088 20 H 0.116 0.884 21 C -0.035 4.035 22 C -0.039 4.039 23 C -0.105 4.105 24 C -0.118 4.118 25 C -0.057 4.057 26 C -0.104 4.104 27 C -0.131 4.131 28 C -0.128 4.128 29 C -0.105 4.105 30 C -0.033 4.033 31 H 0.275 0.725 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.400 0.600 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.599 -3.683 -0.057 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.147 4.147 3 Si 0.685 3.315 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.438 4.438 8 H 0.126 0.874 9 N -0.170 5.170 10 C -0.027 4.027 11 C 0.297 3.703 12 O -0.376 6.376 13 O -0.339 6.339 14 C 0.294 3.706 15 O -0.405 6.405 16 C -0.200 4.200 17 H 0.133 0.867 18 C -0.185 4.185 19 C -0.106 4.106 20 H 0.133 0.867 21 C -0.036 4.036 22 C -0.057 4.057 23 C -0.123 4.123 24 C -0.136 4.136 25 C -0.057 4.057 26 C -0.122 4.122 27 C -0.149 4.149 28 C -0.146 4.146 29 C -0.123 4.123 30 C -0.033 4.033 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.258 0.742 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.118 -4.010 0.835 15.663 hybrid contribution -0.008 0.974 -0.741 1.224 sum 15.110 -3.036 0.094 15.412 Atomic orbital electron populations 1.69757 1.06163 1.28011 1.45222 1.25374 0.95195 0.98098 0.96037 0.87214 0.81777 0.84308 0.78202 1.19840 1.20607 1.18225 1.19020 0.85116 0.96919 1.42720 0.87403 1.43377 1.10398 1.40327 1.22849 1.21588 1.03135 0.94791 0.83221 1.24596 0.73175 0.87549 0.84990 1.90693 1.41789 1.18589 1.86552 1.84583 1.81773 1.49258 1.18264 1.19280 0.84544 0.83137 0.83614 1.90651 1.79415 1.42387 1.28078 1.22494 0.95647 0.96134 1.05710 0.86698 1.23072 1.02841 0.97747 0.94845 1.20954 0.97601 1.00811 0.91228 0.86656 1.18516 0.96956 0.96274 0.91808 1.20463 0.93032 0.93127 0.99093 1.20729 0.99150 0.99422 0.92980 1.20845 0.96765 0.98871 0.97114 1.17949 0.96985 0.97731 0.93043 1.20948 0.96679 0.98805 0.95772 1.20694 0.97893 0.97689 0.98644 1.20714 1.00569 1.00192 0.93106 1.21001 0.96144 0.97894 0.97223 1.17755 0.96158 0.96761 0.92645 0.91427 0.87919 0.87064 0.74186 0.87786 0.88115 0.86608 0.86554 0.86347 0.86197 0.86708 0.86669 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.41 13.96 55.50 0.77 -23.64 16 2 C 0.06 1.60 5.27 -17.47 -0.09 1.51 16 3 Si 0.86 19.38 25.03 -169.99 -4.25 15.13 16 4 H -0.27 -5.61 6.69 56.52 0.38 -5.23 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.31 -8.66 9.36 -14.93 -0.14 -8.80 16 8 H 0.11 3.43 7.91 -52.49 -0.42 3.01 16 9 N -0.45 -10.58 1.73 -116.09 -0.20 -10.78 16 10 C 0.10 1.93 4.38 -5.19 -0.02 1.91 16 11 C 0.46 8.40 8.23 36.01 0.30 8.70 16 12 O -0.49 -10.57 17.05 -18.74 -0.32 -10.89 16 13 O -0.53 -7.34 13.42 -39.26 -0.53 -7.86 16 14 C 0.51 11.35 7.05 -10.99 -0.08 11.28 16 15 O -0.53 -13.27 11.58 5.55 0.06 -13.21 16 16 C -0.18 -3.02 5.20 -91.77 -0.48 -3.49 16 17 H 0.12 1.64 6.53 -51.93 -0.34 1.30 16 18 C -0.15 -2.14 9.57 -26.71 -0.26 -2.40 16 19 C -0.09 -1.32 5.48 -91.76 -0.50 -1.83 16 20 H 0.12 1.41 6.65 -51.93 -0.35 1.06 16 21 C -0.04 -0.62 4.39 -104.53 -0.46 -1.08 16 22 C -0.04 -0.71 6.12 -39.93 -0.24 -0.96 16 23 C -0.10 -1.78 9.95 -39.94 -0.40 -2.18 16 24 C -0.12 -1.88 9.77 -39.49 -0.39 -2.26 16 25 C -0.06 -0.94 5.74 -106.83 -0.61 -1.55 16 26 C -0.10 -1.44 9.77 -39.48 -0.39 -1.83 16 27 C -0.13 -1.67 9.95 -39.93 -0.40 -2.07 16 28 C -0.13 -1.66 9.95 -39.93 -0.40 -2.05 16 29 C -0.10 -1.53 9.35 -39.48 -0.37 -1.90 16 30 C -0.03 -0.56 5.74 -106.84 -0.61 -1.18 16 31 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.10 1.61 6.26 -51.93 -0.33 1.28 16 33 H 0.11 2.27 3.56 -51.93 -0.19 2.09 16 34 H 0.40 3.72 9.10 45.56 0.41 4.13 16 35 H 0.10 1.67 6.18 -51.93 -0.32 1.35 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.12 2.17 5.68 -52.49 -0.30 1.87 16 38 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.12 1.53 6.37 -52.49 -0.33 1.19 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -34.30 353.94 -8.51 -42.81 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -3.84 Total: 13.27 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -5.53 Total: -10.16 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.57 Total: -34.42 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.78 Total: -31.96 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.25 Total: 15.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.30 -8.51 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.579 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds