Wall clock time and date at job start Tue Mar 31 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48501 * 109.47010 * 275.72941 * 3 2 1 5 5 H 1.48502 * 109.47221 * 35.72991 * 3 2 1 6 6 H 1.48497 * 109.46759 * 155.73023 * 3 2 1 7 7 C 1.38954 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00010 * 337.72479 * 7 2 1 9 9 N 1.37097 * 119.99585 * 157.72191 * 7 2 1 10 10 C 1.46499 * 120.00105 * 322.62281 * 9 7 2 11 11 C 1.50702 * 109.46852 * 264.13688 * 10 9 7 12 12 O 1.20819 * 120.00104 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99616 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99940 * 142.62155 * 9 7 2 15 15 O 1.21293 * 119.99954 * 359.97438 * 14 9 7 16 16 C 1.50697 * 120.00206 * 180.02562 * 14 9 7 17 17 H 1.08996 * 115.55062 * 34.27334 * 16 14 9 18 18 C 1.53007 * 117.49721 * 248.60934 * 16 14 9 19 19 C 1.52999 * 117.49801 * 179.97438 * 16 14 9 20 20 H 1.09000 * 117.49644 * 214.97341 * 19 16 14 21 21 C 1.50702 * 117.50059 * 359.97438 * 19 16 14 22 22 C 1.36126 * 120.16952 * 60.00299 * 21 19 16 23 23 C 1.39330 * 120.98238 * 179.97438 * 22 21 19 24 24 C 1.36122 * 120.99647 * 359.97438 * 23 22 21 25 25 C 1.40506 * 119.65000 * 359.97438 * 24 23 22 26 26 C 1.40551 * 121.28865 * 179.97438 * 25 24 23 27 27 C 1.36086 * 119.65008 * 180.02562 * 26 25 24 28 28 C 1.39382 * 120.99820 * 359.97438 * 27 26 25 29 29 C 1.36091 * 120.98748 * 0.04603 * 28 27 26 30 30 C 1.40504 * 120.17350 * 239.72282 * 21 19 16 31 31 H 0.96995 * 120.00371 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46750 * 144.13791 * 10 9 7 33 33 H 1.08998 * 109.47082 * 24.13859 * 10 9 7 34 34 H 0.96704 * 116.99512 * 180.02562 * 13 11 10 35 35 H 1.09005 * 117.49695 * 359.97438 * 18 16 14 36 36 H 1.08996 * 117.49748 * 145.01759 * 18 16 14 37 37 H 1.07991 * 119.50751 * 359.97438 * 22 21 19 38 38 H 1.08007 * 119.50212 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.17757 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.17275 * 359.97438 * 26 25 24 41 41 H 1.08000 * 119.49997 * 179.97438 * 27 26 25 42 42 H 1.07997 * 119.50550 * 180.02562 * 28 27 26 43 43 H 1.07999 * 120.17054 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3745 2.1163 -1.3931 5 1 1.5113 2.6147 0.8176 6 1 3.6009 1.4083 0.5755 7 6 2.0089 -1.2034 0.0005 8 1 1.5293 -2.1036 0.3555 9 7 3.3031 -1.2478 -0.4496 10 6 3.7091 -0.4286 -1.5942 11 6 3.6423 -1.2553 -2.8524 12 8 3.2911 -2.4101 -2.7986 13 8 3.9730 -0.7086 -4.0330 14 6 4.2019 -2.0452 0.1610 15 8 3.8659 -2.7231 1.1090 16 6 5.6247 -2.0937 -0.3333 17 1 6.0191 -1.1553 -0.7231 18 6 6.0985 -3.3888 -0.9961 19 6 6.5970 -3.0179 0.4024 20 1 7.6315 -2.6876 0.4966 21 6 6.0589 -3.8097 1.5662 22 6 5.0378 -4.6906 1.3806 23 6 4.5276 -5.4317 2.4445 24 6 5.0356 -5.2968 3.7002 25 6 6.0907 -4.3979 3.9303 26 6 6.6408 -4.2310 5.2128 27 6 7.6619 -3.3507 5.3980 28 6 8.1731 -2.6100 4.3337 29 6 7.6653 -2.7450 3.0783 30 6 6.6123 -3.6467 2.8474 31 1 -0.4850 0.8400 0.0004 32 1 4.7297 -0.0760 -1.4448 33 1 3.0390 0.4262 -1.6851 34 1 3.9141 -1.2782 -4.8123 35 1 5.3812 -4.2059 -1.0742 36 1 6.8050 -3.3024 -1.8216 37 1 4.6170 -4.8169 0.3942 38 1 3.7168 -6.1236 2.2702 39 1 4.6303 -5.8782 4.5151 40 1 6.2547 -4.7978 6.0471 41 1 8.0826 -3.2240 6.3847 42 1 8.9841 -1.9184 4.5079 43 1 8.0717 -2.1648 2.2631 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739076743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:35 Heat of formation + Delta-G solvation = -41.050432 kcal Electronic energy + Delta-G solvation = -29757.022416 eV Core-core repulsion = 25733.348718 eV Total energy + Delta-G solvation = -4023.673697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88205 -41.23589 -40.26594 -38.20493 -37.04784 -36.72554 -36.37835 -34.20032 -33.25780 -31.08599 -29.90963 -29.71475 -27.73050 -25.04514 -24.42335 -23.94470 -23.45525 -23.17447 -21.28283 -19.97945 -19.18800 -19.15135 -18.66563 -18.19149 -17.85431 -17.42365 -17.15341 -16.84115 -16.53111 -15.92506 -15.70517 -15.23044 -14.98104 -14.92057 -14.53751 -14.53297 -14.41464 -14.20725 -14.07858 -13.93854 -13.72190 -13.37765 -12.89847 -12.73183 -12.66733 -12.54059 -12.35645 -12.31146 -11.96292 -11.79489 -11.68090 -11.58692 -11.48799 -11.31298 -11.05166 -10.61304 -10.14523 -9.85603 -9.28827 -8.53466 -8.41576 -6.17472 -0.26367 0.26415 1.14308 1.19056 1.22563 1.34400 1.45368 1.67574 2.05571 2.16105 2.28057 2.63570 2.82202 3.10595 3.32878 3.53915 3.78835 3.79929 3.90956 3.97550 4.02377 4.08137 4.13310 4.14823 4.23070 4.34895 4.40408 4.53141 4.60961 4.63480 4.68769 4.82225 4.84646 4.96974 5.05945 5.17834 5.36706 5.46064 5.46610 5.47865 5.65194 5.65710 5.75285 5.88070 6.02880 6.06822 6.26712 6.47984 6.90985 7.05357 7.23381 7.83934 8.64404 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.004156 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.522806 B = 6735.666958 C = 7334.356331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.007 3.993 3 Si 0.934 3.066 4 H -0.230 1.230 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.327 4.327 8 H 0.036 0.964 9 N -0.463 5.463 10 C 0.091 3.909 11 C 0.469 3.531 12 O -0.534 6.534 13 O -0.505 6.505 14 C 0.494 3.506 15 O -0.568 6.568 16 C -0.189 4.189 17 H 0.155 0.845 18 C -0.133 4.133 19 C -0.080 4.080 20 H 0.156 0.844 21 C -0.048 4.048 22 C -0.066 4.066 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.082 4.082 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.122 4.122 29 C -0.119 4.119 30 C -0.058 4.058 31 H 0.280 0.720 32 H 0.153 0.847 33 H 0.106 0.894 34 H 0.425 0.575 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.370 -0.669 -0.478 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.755 3.245 4 H -0.154 1.154 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.455 4.455 8 H 0.054 0.946 9 N -0.185 5.185 10 C -0.034 4.034 11 C 0.310 3.690 12 O -0.423 6.423 13 O -0.318 6.318 14 C 0.285 3.715 15 O -0.449 6.449 16 C -0.209 4.209 17 H 0.173 0.827 18 C -0.170 4.170 19 C -0.098 4.098 20 H 0.174 0.826 21 C -0.048 4.048 22 C -0.084 4.084 23 C -0.151 4.151 24 C -0.140 4.140 25 C -0.082 4.082 26 C -0.135 4.135 27 C -0.144 4.144 28 C -0.140 4.140 29 C -0.137 4.137 30 C -0.058 4.058 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.124 0.876 34 H 0.287 0.713 35 H 0.093 0.907 36 H 0.162 0.838 37 H 0.111 0.889 38 H 0.136 0.864 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.168 0.832 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 19.916 -0.998 0.351 19.944 hybrid contribution -1.494 -0.091 -0.556 1.597 sum 18.423 -1.089 -0.205 18.456 Atomic orbital electron populations 1.69895 1.08371 1.29474 1.47075 1.26241 0.95942 1.02295 0.95013 0.86039 0.80268 0.77758 0.80423 1.15416 1.21133 1.16648 1.18494 0.87400 0.95142 1.44432 0.94610 1.43384 1.08860 1.41533 1.24744 1.21743 1.05525 0.93783 0.82346 1.24205 0.72275 0.86544 0.85966 1.90709 1.43841 1.20466 1.87296 1.84487 1.80564 1.48974 1.17825 1.20361 0.86746 0.81439 0.82944 1.90647 1.80784 1.43571 1.29948 1.22478 0.91967 0.98821 1.07669 0.82740 1.23160 1.02452 0.95263 0.96152 1.21199 0.98686 0.99485 0.90446 0.82644 1.18852 0.96587 0.95997 0.93346 1.20430 0.94503 0.95081 0.98405 1.20900 1.00029 1.00392 0.93823 1.21141 0.96773 0.99039 0.97062 1.18347 0.97372 0.98010 0.94489 1.21249 0.97283 0.99737 0.95260 1.21171 0.96753 0.96212 1.00295 1.21190 1.00623 0.99835 0.92346 1.21288 0.95690 0.97791 0.98915 1.18109 0.97346 0.97838 0.92468 0.90986 0.82961 0.87611 0.71329 0.90666 0.83759 0.88886 0.86445 0.84134 0.84115 0.83351 0.83201 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.75 13.96 21.66 0.30 -54.45 16 2 C 0.01 0.39 5.27 84.93 0.45 0.84 16 3 Si 0.93 39.44 25.03 68.60 1.72 41.16 16 4 H -0.23 -8.16 6.69 99.48 0.67 -7.50 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.24 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.33 -19.44 9.36 84.04 0.79 -18.66 16 8 H 0.04 2.56 7.91 -2.91 -0.02 2.54 16 9 N -0.46 -22.26 1.73 -639.59 -1.11 -23.37 16 10 C 0.09 3.33 4.38 85.63 0.37 3.70 16 11 C 0.47 16.29 8.23 71.24 0.59 16.88 16 12 O -0.53 -23.20 17.05 21.98 0.37 -22.82 16 13 O -0.51 -12.07 13.42 -51.44 -0.69 -12.76 16 14 C 0.49 22.74 7.05 87.66 0.62 23.36 16 15 O -0.57 -30.73 11.58 -3.07 -0.04 -30.77 16 16 C -0.19 -5.95 5.20 -11.54 -0.06 -6.01 16 17 H 0.16 3.57 6.53 -2.39 -0.02 3.56 16 18 C -0.13 -3.63 9.57 30.61 0.29 -3.34 16 19 C -0.08 -2.26 5.48 -11.53 -0.06 -2.32 16 20 H 0.16 3.07 6.65 -2.39 -0.02 3.05 16 21 C -0.05 -1.70 4.39 -19.80 -0.09 -1.79 16 22 C -0.07 -2.63 6.12 22.04 0.13 -2.49 16 23 C -0.13 -5.01 9.95 22.04 0.22 -4.79 16 24 C -0.12 -4.11 9.77 22.33 0.22 -3.90 16 25 C -0.08 -2.71 5.74 -21.30 -0.12 -2.84 16 26 C -0.12 -3.07 9.77 22.33 0.22 -2.85 16 27 C -0.13 -2.78 9.95 22.04 0.22 -2.56 16 28 C -0.12 -2.68 9.95 22.05 0.22 -2.46 16 29 C -0.12 -3.13 9.35 22.33 0.21 -2.93 16 30 C -0.06 -1.93 5.74 -21.30 -0.12 -2.05 16 31 H 0.28 15.36 8.31 -92.71 -0.77 14.58 16 32 H 0.15 3.96 6.26 -2.39 -0.01 3.95 16 33 H 0.11 3.99 3.56 -2.39 -0.01 3.98 16 34 H 0.43 6.26 9.10 -74.05 -0.67 5.58 16 35 H 0.07 2.53 6.18 -2.38 -0.01 2.51 16 36 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.09 3.96 5.68 -2.92 -0.02 3.95 16 38 H 0.12 4.09 8.06 -2.91 -0.02 4.06 16 39 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 40 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 42 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.14 2.99 6.37 -2.91 -0.02 2.97 16 Total: -1.00 -85.60 353.94 5.02 -80.58 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: 0.37 Total: 36.64 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 4.09 Total: -14.21 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -0.80 Total: -77.82 kcal Atomic # 8 Polarization: -66.00 SS G_CDS: -0.35 Total: -66.35 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 1.72 Total: 41.16 kcal Total: -85.60 5.02 -80.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.531 kcal (2) G-P(sol) polarization free energy of solvation -85.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds