Wall clock time and date at job start Tue Mar 31 2020 22:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47071 * 2 1 4 4 N 1.40080 * 126.03989 * 90.02438 * 3 2 1 5 5 C 1.30837 * 108.21081 * 180.02562 * 4 3 2 6 6 C 1.50698 * 125.90177 * 180.02562 * 5 4 3 7 7 C 1.39871 * 108.20161 * 359.97438 * 5 4 3 8 8 S 1.76192 * 126.04208 * 179.97438 * 7 5 4 9 9 O 1.42098 * 106.40180 * 343.84120 * 8 7 5 10 10 O 1.42101 * 106.40127 * 210.92214 * 8 7 5 11 11 N 1.65598 * 107.21996 * 97.38309 * 8 7 5 12 12 C 1.40572 * 120.00092 * 295.82920 * 11 8 7 13 13 C 1.40659 * 126.07640 * 313.62780 * 12 11 8 14 14 N 1.30929 * 108.40684 * 179.87497 * 13 12 11 15 15 N 1.40079 * 108.39637 * 0.38029 * 14 13 12 16 16 C 1.37306 * 126.07467 * 179.71880 * 15 14 13 17 17 H 1.08002 * 119.99956 * 180.02562 * 16 15 14 18 18 C 1.38981 * 120.00611 * 0.04499 * 16 15 14 19 19 N 1.31310 * 119.99460 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00263 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46893 * 60.00109 * 20 18 16 22 22 H 1.48506 * 109.46944 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47561 * 299.99744 * 20 18 16 24 24 C 1.35637 * 126.07740 * 133.93126 * 12 11 8 25 25 C 1.34953 * 126.03911 * 270.30871 * 3 2 1 26 26 C 1.50703 * 126.12445 * 359.97438 * 25 3 2 27 27 H 1.08994 * 109.47308 * 299.99548 * 1 2 3 28 28 H 1.09001 * 109.46928 * 60.00344 * 1 2 3 29 29 H 1.09009 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47423 * 239.99779 * 2 1 3 31 31 H 1.09000 * 109.47109 * 120.00176 * 2 1 3 32 32 H 1.09002 * 109.47209 * 269.97481 * 6 5 4 33 33 H 1.09000 * 109.46889 * 29.97666 * 6 5 4 34 34 H 1.09000 * 109.47143 * 149.97342 * 6 5 4 35 35 H 0.97001 * 120.00455 * 115.55184 * 11 8 7 36 36 H 1.08003 * 125.79528 * 0.03265 * 13 12 11 37 37 H 0.96996 * 119.99348 * 179.97438 * 19 18 16 38 38 H 1.07999 * 126.24572 * 359.93429 * 24 12 11 39 39 H 1.08997 * 109.46854 * 264.68340 * 26 25 3 40 40 H 1.09000 * 109.47126 * 24.69009 * 26 25 3 41 41 H 1.09002 * 109.46773 * 144.68401 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1580 1.1327 5 6 2.7080 3.3326 0.7321 6 6 3.1136 4.4778 1.6236 7 6 2.7106 3.3413 -0.6666 8 16 3.1862 4.6913 -1.6940 9 8 3.1908 5.8448 -0.8642 10 8 2.4069 4.5886 -2.8778 11 7 4.7585 4.4337 -2.1454 12 6 5.7758 4.4241 -1.1752 13 6 5.9467 5.3662 -0.1449 14 7 6.9976 5.0248 0.5574 15 7 7.5424 3.8607 0.0003 16 6 8.6553 3.1936 0.4496 17 1 8.9910 2.3009 -0.0571 18 6 9.3495 3.6669 1.5567 19 7 8.9414 4.7523 2.1727 20 14 10.8630 2.7588 2.1683 21 1 11.8860 2.7212 1.0925 22 1 11.4170 3.4621 3.3532 23 1 10.4897 1.3719 2.5451 24 6 6.7703 3.5078 -1.0698 25 6 2.2774 2.1317 -1.0912 26 6 2.1168 1.6989 -2.5258 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.2425 5.0966 1.8393 33 1 3.5209 4.0861 2.5557 34 1 3.8709 5.0792 1.1206 35 1 4.9772 4.2855 -3.0787 36 1 5.3163 6.2241 0.0377 37 1 9.4258 5.0824 2.9456 38 1 6.9233 2.6546 -1.7139 39 1 3.0729 1.3394 -2.9060 40 1 1.3787 0.8989 -2.5835 41 1 1.7824 2.5455 -3.1254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741654006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:44 Heat of formation + Delta-G solvation = 76.514153 kcal Electronic energy + Delta-G solvation = -28234.937033 eV Core-core repulsion = 24280.557678 eV Total energy + Delta-G solvation = -3954.379355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27966 -39.53362 -36.77874 -35.35411 -34.98382 -34.46111 -33.00476 -32.48874 -30.78129 -30.25554 -27.58245 -27.37677 -27.04802 -24.78443 -23.48614 -21.05477 -20.69257 -19.96056 -19.44664 -18.87115 -17.77863 -16.96436 -16.80938 -15.88226 -15.60245 -15.46862 -15.29399 -14.54725 -14.49838 -13.94614 -13.74803 -13.44738 -13.28916 -13.20828 -13.09894 -13.04183 -12.48768 -12.34924 -12.05903 -11.88964 -11.80803 -11.76387 -11.67191 -11.64930 -11.51292 -11.24179 -11.18123 -11.06506 -10.87641 -10.59267 -10.22654 -9.99886 -9.34424 -8.99048 -8.93148 -8.78096 -8.14160 -7.01192 -6.60433 -4.30505 0.99631 1.68799 2.42794 2.56910 2.94119 3.02604 3.06329 3.51101 3.62106 3.84201 4.12520 4.24866 4.33045 4.40306 4.67599 4.68837 4.76270 4.90227 4.93763 4.97656 5.09375 5.26167 5.34414 5.43394 5.58101 5.71569 5.84655 5.86295 6.07851 6.14406 6.25183 6.33017 6.43463 6.46695 6.83560 6.86560 6.97748 7.12762 7.32944 7.63567 7.72946 7.81228 8.18384 8.63282 9.30395 9.56603 10.35149 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.004132 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.207540 B = 6774.683741 C = 7709.341605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 N -0.363 5.363 4 N -0.302 5.302 5 C 0.178 3.822 6 C -0.095 4.095 7 C -0.804 4.804 8 S 2.720 3.280 9 O -0.955 6.955 10 O -0.986 6.986 11 N -1.015 6.015 12 C -0.058 4.058 13 C -0.042 4.042 14 N -0.250 5.250 15 N -0.141 5.141 16 C -0.324 4.324 17 H 0.116 0.884 18 C 0.048 3.952 19 N -0.768 5.768 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.060 4.060 25 C 0.204 3.796 26 C -0.131 4.131 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.408 0.592 36 H 0.171 0.829 37 H 0.276 0.724 38 H 0.145 0.855 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.635 -8.728 -6.381 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.141 5.141 4 N -0.123 5.123 5 C 0.009 3.991 6 C -0.154 4.154 7 C -0.902 4.902 8 S 2.809 3.191 9 O -0.944 6.944 10 O -0.975 6.975 11 N -0.768 5.768 12 C -0.167 4.167 13 C -0.220 4.220 14 N -0.080 5.080 15 N 0.092 4.908 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.169 4.169 19 N -0.394 5.394 20 Si 0.757 3.243 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.192 1.192 24 C -0.213 4.213 25 C 0.070 3.930 26 C -0.189 4.189 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.243 0.757 36 H 0.188 0.812 37 H 0.087 0.913 38 H 0.162 0.838 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.760 -8.482 -4.182 15.091 hybrid contribution 0.529 -1.196 -1.125 1.725 sum -11.232 -9.678 -5.307 15.748 Atomic orbital electron populations 1.22205 0.94110 1.03129 1.03450 1.21748 0.95344 0.78119 1.04775 1.49045 1.49646 1.11765 1.03623 1.77374 1.24350 1.03952 1.06574 1.21888 0.92301 0.93723 0.91204 1.20663 1.03193 0.93065 0.98448 1.31226 1.31813 1.18443 1.08702 1.01250 0.71673 0.73749 0.72444 1.93518 1.86032 1.45721 1.69170 1.93458 1.68882 1.87684 1.47525 1.52159 1.21563 1.88932 1.14144 1.16701 0.98471 1.01520 0.99980 1.24038 0.99464 1.00623 0.97855 1.78271 1.09767 0.99671 1.20307 1.44604 1.16024 1.15315 1.14876 1.19829 1.02316 1.09690 1.13811 0.86691 1.25616 0.99355 0.95988 0.95962 1.70189 1.35819 1.17389 1.15996 0.85913 0.80143 0.79431 0.78788 1.19140 1.20066 1.19239 1.21647 0.98900 1.02921 0.97879 1.20838 0.91647 0.89420 0.91122 1.21092 1.04145 1.04936 0.88757 0.91435 0.91891 0.90353 0.88736 0.88317 0.89904 0.90608 0.87381 0.75740 0.81234 0.91311 0.83772 0.88818 0.90331 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.12 1.18 6.75 -4.04 -0.03 1.16 16 3 N -0.36 -5.36 3.61 -57.14 -0.21 -5.57 16 4 N -0.30 -5.49 12.57 33.67 0.42 -5.06 16 5 C 0.18 3.34 7.21 -82.41 -0.59 2.75 16 6 C -0.10 -1.73 9.55 36.00 0.34 -1.39 16 7 C -0.80 -14.06 6.09 -40.01 -0.24 -14.31 16 8 S 2.72 47.42 5.69 -107.50 -0.61 46.81 16 9 O -0.95 -18.77 13.45 -57.17 -0.77 -19.54 16 10 O -0.99 -16.96 15.62 -57.17 -0.89 -17.85 16 11 N -1.02 -17.57 5.93 32.32 0.19 -17.38 16 12 C -0.06 -1.24 6.54 -83.86 -0.55 -1.79 16 13 C -0.04 -1.00 9.52 -17.02 -0.16 -1.16 16 14 N -0.25 -6.78 10.40 30.81 0.32 -6.46 16 15 N -0.14 -3.69 3.74 -11.40 -0.04 -3.73 16 16 C -0.32 -8.28 10.25 -14.82 -0.15 -8.43 16 17 H 0.12 2.64 7.83 -52.49 -0.41 2.23 16 18 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 19 N -0.77 -20.61 11.81 55.49 0.66 -19.95 16 20 Si 0.93 18.47 29.55 -169.99 -5.02 13.45 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.06 -1.36 11.50 -16.36 -0.19 -1.55 16 25 C 0.20 3.04 6.92 -82.26 -0.57 2.47 16 26 C -0.13 -1.40 9.62 36.01 0.35 -1.06 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.09 0.67 7.55 -51.93 -0.39 0.28 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.11 2.14 4.28 -51.93 -0.22 1.92 16 35 H 0.41 5.79 8.96 -34.47 -0.31 5.48 16 36 H 0.17 3.85 6.47 -52.48 -0.34 3.51 16 37 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.14 2.79 8.06 -52.49 -0.42 2.36 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.60 7.49 -51.93 -0.39 0.21 16 41 H 0.12 1.38 5.95 -51.93 -0.31 1.07 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -34.06 355.27 -7.00 -41.06 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -4.89 Total: 12.06 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -1.51 Total: -23.18 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 1.34 Total: -58.15 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -1.66 Total: -37.39 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Atomic # 16 Polarization: 47.42 SS G_CDS: -0.61 Total: 46.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.06 -7.00 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741654006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.570 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds