Wall clock time and date at job start Tue Mar 31 2020 22:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 119.99851 * 2 1 4 4 C 1.50696 * 109.46650 * 275.54870 * 3 2 1 5 5 H 1.07995 * 120.00548 * 4.96013 * 4 3 2 6 6 C 1.37886 * 119.99602 * 184.96075 * 4 3 2 7 7 N 1.31512 * 119.99597 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 120.00045 * 359.97438 * 6 4 3 9 9 H 1.48509 * 109.46979 * 90.00316 * 8 6 4 10 10 H 1.48497 * 109.47045 * 210.00174 * 8 6 4 11 11 H 1.48496 * 109.47427 * 330.00182 * 8 6 4 12 12 S 1.65597 * 119.99833 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.40015 * 159.52675 * 12 2 1 14 14 O 1.42098 * 106.40252 * 26.60822 * 12 2 1 15 15 N 1.65599 * 107.21927 * 273.06554 * 12 2 1 16 16 C 1.46496 * 120.00126 * 62.73333 * 15 12 2 17 17 C 1.53001 * 109.47134 * 164.41962 * 16 15 12 18 18 C 1.50697 * 109.46959 * 179.97438 * 17 16 15 19 19 N 1.30808 * 126.25337 * 270.00044 * 18 17 16 20 20 N 1.28673 * 110.29652 * 180.02562 * 19 18 17 21 21 C 1.32316 * 109.48176 * 359.74807 * 20 19 18 22 22 C 1.40814 * 133.46114 * 179.55237 * 21 20 19 23 23 C 1.36029 * 119.22530 * 180.39614 * 22 21 20 24 24 C 1.40548 * 119.74447 * 0.27465 * 23 22 21 25 25 C 1.34956 * 120.36774 * 0.02562 * 24 23 22 26 26 N 1.36068 * 126.24674 * 90.00541 * 18 17 16 27 27 H 1.08995 * 109.47347 * 270.00516 * 1 2 3 28 28 H 1.08998 * 109.46583 * 30.00620 * 1 2 3 29 29 H 1.08995 * 109.46945 * 150.00287 * 1 2 3 30 30 H 1.08992 * 109.47245 * 35.54901 * 3 2 1 31 31 H 1.09004 * 109.46544 * 155.55458 * 3 2 1 32 32 H 0.97008 * 119.99704 * 180.02562 * 7 6 4 33 33 H 0.97008 * 119.99931 * 242.73538 * 15 12 2 34 34 H 1.09002 * 109.47136 * 44.42323 * 16 15 12 35 35 H 1.08994 * 109.47420 * 284.42460 * 16 15 12 36 36 H 1.09001 * 109.47066 * 60.00651 * 17 16 15 37 37 H 1.08994 * 109.47373 * 300.00527 * 17 16 15 38 38 H 1.08003 * 120.39247 * 0.66860 * 22 21 20 39 39 H 1.07990 * 120.12884 * 180.25367 * 23 22 21 40 40 H 1.07994 * 119.81714 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.74635 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3296 1.7724 -1.4142 5 1 1.8421 1.2474 -2.2222 6 6 3.0731 2.9037 -1.6764 7 7 3.1880 3.3434 -2.9105 8 14 3.9159 3.8122 -0.2788 9 1 5.2813 3.2620 -0.0829 10 1 4.0072 5.2566 -0.6113 11 1 3.1292 3.6403 0.9689 12 16 2.2930 -1.4341 0.0006 13 8 3.5996 -1.1433 -0.4763 14 8 1.4381 -2.3913 -0.6095 15 7 2.4648 -1.9003 1.5803 16 6 1.2800 -2.1932 2.3907 17 6 1.6986 -2.9573 3.6484 18 6 0.4799 -3.2580 4.4823 19 7 -0.0201 -2.4993 5.4232 20 7 -1.0624 -3.0527 5.9361 21 6 -1.2883 -4.2098 5.3355 22 6 -2.2655 -5.2107 5.4975 23 6 -2.2202 -6.3172 4.7076 24 6 -1.2004 -6.4487 3.7494 25 6 -0.2670 -5.4840 3.6097 26 7 -0.3013 -4.3686 4.3939 27 1 -0.3634 0.0001 1.0276 28 1 -0.3632 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6551 2.0015 0.5974 31 1 3.1894 1.1156 0.4253 32 1 3.7113 4.1391 -3.0951 33 1 3.3500 -1.9793 1.9692 34 1 0.5847 -2.8006 1.8112 35 1 0.7957 -1.2597 2.6769 36 1 2.3939 -2.3499 4.2279 37 1 2.1830 -3.8908 3.3622 38 1 -3.0446 -5.0991 6.2371 39 1 -2.9646 -7.0919 4.8166 40 1 -1.1630 -7.3268 3.1220 41 1 0.5119 -5.5951 2.8699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751256421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:55 Heat of formation + Delta-G solvation = 10.427498 kcal Electronic energy + Delta-G solvation = -26987.584357 eV Core-core repulsion = 23030.339269 eV Total energy + Delta-G solvation = -3957.245088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.58131 -39.13799 -38.37883 -37.43543 -37.23050 -36.90177 -35.03198 -34.51668 -32.72677 -31.63793 -30.29644 -29.12145 -26.83901 -25.18967 -24.88241 -24.17089 -23.85414 -22.27904 -20.50898 -19.21119 -19.06627 -18.75445 -18.30186 -18.00218 -17.78756 -17.31667 -16.68073 -16.51072 -16.17519 -16.00337 -15.54568 -15.39493 -15.02749 -14.62486 -14.51373 -14.08923 -13.75899 -13.56137 -13.46825 -13.41656 -13.22349 -13.14375 -13.08085 -13.00338 -12.88830 -12.79539 -12.51570 -12.37692 -12.25546 -12.08314 -12.02081 -11.71287 -11.58216 -10.78603 -10.62934 -10.57297 -9.81744 -9.08008 -8.30014 -6.35780 -0.42288 -0.28680 0.09967 1.28230 1.37586 1.40803 1.49377 1.59882 1.96326 2.35257 2.38988 2.56899 3.02089 3.04669 3.35623 3.45465 3.51605 3.66359 3.77138 3.91838 3.98213 4.09219 4.12806 4.29196 4.44652 4.60553 4.64413 4.68195 4.71637 4.85776 4.88143 4.92124 5.00719 5.03876 5.07413 5.19817 5.31079 5.46222 5.47056 5.67618 5.89770 6.08729 6.29517 6.67377 7.27649 7.44648 8.87342 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.002741 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.435773 B =10214.315708 C =10709.930218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.000 6.000 3 C 0.234 3.766 4 C -0.545 4.545 5 H 0.030 0.970 6 C 0.008 3.992 7 N -0.947 5.947 8 Si 0.942 3.058 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.231 1.231 12 S 2.800 3.200 13 O -1.005 7.005 14 O -1.007 7.007 15 N -1.112 6.112 16 C 0.122 3.878 17 C -0.027 4.027 18 C 0.141 3.859 19 N -0.282 5.282 20 N -0.345 5.345 21 C 0.183 3.817 22 C -0.110 4.110 23 C -0.061 4.061 24 C -0.126 4.126 25 C 0.043 3.957 26 N -0.390 5.390 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.268 0.732 33 H 0.429 0.571 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.169 0.831 39 H 0.187 0.813 40 H 0.196 0.804 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 -23.907 18.835 31.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.841 5.841 3 C 0.109 3.891 4 C -0.584 4.584 5 H 0.049 0.951 6 C -0.190 4.190 7 N -0.587 5.587 8 Si 0.764 3.236 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.154 1.154 12 S 2.807 3.193 13 O -0.989 6.989 14 O -0.990 6.990 15 N -0.877 5.877 16 C -0.005 4.005 17 C -0.068 4.068 18 C -0.124 4.124 19 N -0.121 5.121 20 N -0.191 5.191 21 C -0.067 4.067 22 C -0.131 4.131 23 C -0.085 4.085 24 C -0.147 4.147 25 C -0.078 4.078 26 N -0.070 5.070 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.266 0.734 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.187 0.813 39 H 0.205 0.795 40 H 0.213 0.787 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.105 -22.870 18.880 31.022 hybrid contribution 0.803 0.180 -0.492 0.959 sum -8.302 -22.690 18.388 30.362 Atomic orbital electron populations 1.21609 0.78105 1.03731 1.02451 1.57309 1.15701 1.21676 1.89418 1.19219 0.92085 0.82335 0.95465 1.21710 1.31790 1.11026 0.93898 0.95130 1.25930 0.96518 0.98033 0.98561 1.70067 1.42101 1.24976 1.21604 0.85803 0.79858 0.77655 0.80292 1.19263 1.20484 1.15365 1.01196 0.72053 0.72469 0.73554 1.93593 1.40844 1.85079 1.79390 1.93506 1.69042 1.61005 1.75426 1.55678 1.15307 1.85060 1.31616 1.21269 0.86775 1.00596 0.91876 1.20234 0.90168 1.03823 0.92566 1.24846 0.99806 0.85460 1.02266 1.74110 1.05287 1.24682 1.07983 1.74860 1.12662 1.06417 1.25163 1.22905 0.94104 0.97719 0.91927 1.20663 0.97550 0.91402 1.03499 1.21772 0.98051 0.96814 0.91886 1.21592 0.93276 0.99832 0.99957 1.22480 1.03739 0.84932 0.96641 1.43855 1.20660 1.15997 1.26452 0.90633 0.91238 0.90804 0.92933 0.94335 0.92323 0.73427 0.90368 0.91088 0.86064 0.86002 0.81334 0.79539 0.78682 0.78695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.78 10.69 127.77 1.37 4.14 16 2 N -1.00 -38.84 3.23 -543.23 -1.75 -40.60 16 3 C 0.23 10.71 4.17 85.63 0.36 11.06 16 4 C -0.55 -31.70 9.93 25.60 0.25 -31.45 16 5 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 6 C 0.01 0.44 5.47 84.66 0.46 0.91 16 7 N -0.95 -60.19 13.96 21.45 0.30 -59.90 16 8 Si 0.94 43.21 27.37 68.60 1.88 45.09 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.23 -9.28 6.69 99.48 0.67 -8.62 16 12 S 2.80 100.83 6.09 -56.49 -0.34 100.49 16 13 O -1.01 -45.40 16.99 -128.00 -2.18 -47.58 16 14 O -1.01 -38.41 16.34 -128.00 -2.09 -40.50 16 15 N -1.11 -25.42 6.05 -187.50 -1.13 -26.55 16 16 C 0.12 2.35 6.24 86.38 0.54 2.89 16 17 C -0.03 -0.40 5.88 29.85 0.18 -0.22 16 18 C 0.14 2.95 7.39 137.71 1.02 3.97 16 19 N -0.28 -8.02 12.19 -49.68 -0.61 -8.63 16 20 N -0.35 -9.97 12.31 -55.40 -0.68 -10.65 16 21 C 0.18 3.87 7.92 134.06 1.06 4.94 16 22 C -0.11 -1.32 10.11 22.39 0.23 -1.10 16 23 C -0.06 -0.29 10.07 22.32 0.22 -0.06 16 24 C -0.13 -0.51 9.98 22.08 0.22 -0.29 16 25 C 0.04 0.40 10.91 83.23 0.91 1.31 16 26 N -0.39 -6.91 2.95 -342.87 -1.01 -7.92 16 27 H 0.08 1.88 8.06 -2.39 -0.02 1.86 16 28 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 29 H 0.07 2.26 7.05 -2.39 -0.02 2.25 16 30 H 0.05 2.22 7.51 -2.39 -0.02 2.20 16 31 H 0.04 1.73 6.66 -2.38 -0.02 1.71 16 32 H 0.27 15.80 8.31 -92.70 -0.77 15.02 16 33 H 0.43 7.56 8.66 -96.74 -0.84 6.72 16 34 H 0.08 1.49 7.79 -2.39 -0.02 1.47 16 35 H 0.07 1.47 8.06 -2.39 -0.02 1.45 16 36 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.19 -0.57 8.06 -2.92 -0.02 -0.59 16 40 H 0.20 -0.70 8.06 -2.91 -0.02 -0.72 16 41 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -91.42 363.86 -0.62 -92.04 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.19 Total: 8.61 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 6.81 Total: -3.90 kcal Atomic # 7 Polarization: -149.36 SS G_CDS: -4.89 Total: -154.24 kcal Atomic # 8 Polarization: -83.81 SS G_CDS: -4.27 Total: -88.08 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal Atomic # 16 Polarization: 100.83 SS G_CDS: -0.34 Total: 100.49 kcal Total: -91.42 -0.62 -92.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751256421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.467 kcal (2) G-P(sol) polarization free energy of solvation -91.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds