Wall clock time and date at job start Tue Mar 31 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30611 * 1 3 3 Si 1.86802 * 119.99692 * 2 1 4 4 H 1.48497 * 109.47259 * 269.99318 * 3 2 1 5 5 H 1.48502 * 109.47470 * 29.99680 * 3 2 1 6 6 H 1.48499 * 109.47047 * 149.99588 * 3 2 1 7 7 C 1.40294 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00482 * 170.69939 * 7 2 1 9 9 C 1.40864 * 119.99646 * 350.69756 * 7 2 1 10 10 C 1.40710 * 120.33085 * 326.08218 * 9 7 2 11 11 C 1.37593 * 119.88206 * 180.25392 * 10 9 7 12 12 C 1.38838 * 120.58532 * 359.74464 * 11 10 9 13 13 C 1.38198 * 120.68545 * 359.97438 * 12 11 10 14 14 C 1.39294 * 120.08351 * 0.02562 * 13 12 11 15 15 C 1.47287 * 120.28895 * 179.97438 * 14 13 12 16 16 O 1.21530 * 120.00069 * 174.20335 * 15 14 13 17 17 O 1.34802 * 120.00002 * 354.19814 * 15 14 13 18 18 C 1.45195 * 117.00282 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.47097 * 29.99921 * 18 17 15 20 20 C 1.52994 * 109.47669 * 150.00254 * 18 17 15 21 21 C 1.50699 * 109.47326 * 295.00469 * 20 18 17 22 22 C 1.38238 * 120.00094 * 89.99440 * 21 20 18 23 23 C 1.38239 * 119.99863 * 179.97438 * 22 21 20 24 24 C 1.38235 * 120.00008 * 359.97438 * 23 22 21 25 25 C 1.38239 * 119.99944 * 0.28061 * 24 23 22 26 26 C 1.38233 * 119.99865 * 359.53124 * 25 24 23 27 27 C 1.50707 * 109.47229 * 270.00684 * 18 17 15 28 28 N 1.34775 * 119.99941 * 175.00118 * 27 18 17 29 29 O 1.21273 * 120.00184 * 354.99259 * 27 18 17 30 30 H 0.97004 * 120.00229 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.05747 * 359.97438 * 10 9 7 32 32 H 1.08005 * 119.70987 * 179.76540 * 11 10 9 33 33 H 1.08008 * 119.65965 * 179.97438 * 12 11 10 34 34 H 1.07998 * 119.95974 * 180.02562 * 13 12 11 35 35 H 1.08998 * 109.47920 * 175.00034 * 20 18 17 36 36 H 1.09004 * 109.46960 * 55.00289 * 20 18 17 37 37 H 1.07997 * 119.99772 * 0.02562 * 22 21 20 38 38 H 1.07999 * 119.99286 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.99460 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.99361 * 179.72808 * 25 24 23 41 41 H 1.07994 * 119.99912 * 180.23266 * 26 25 24 42 42 H 0.97006 * 120.00409 * 359.97438 * 28 27 18 43 43 H 0.97003 * 119.99911 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.4877 2.0464 -1.4000 5 1 1.4374 2.6528 0.7000 6 1 3.5375 1.4403 0.7001 7 6 2.0077 -1.2149 0.0005 8 1 3.0770 -1.2212 -0.1506 9 6 1.3173 -2.4267 0.1983 10 6 0.1968 -2.4757 1.0480 11 6 -0.4676 -3.6654 1.2386 12 6 -0.0458 -4.8211 0.5950 13 6 1.0482 -4.7989 -0.2492 14 6 1.7416 -3.6098 -0.4625 15 6 2.9084 -3.5812 -1.3608 16 8 3.4452 -2.5236 -1.6262 17 8 3.3810 -4.7280 -1.8886 18 6 4.5334 -4.6244 -2.7658 19 1 5.1440 -3.7733 -2.4644 20 6 5.3632 -5.9062 -2.6715 21 6 5.9307 -6.0362 -1.2816 22 6 5.2164 -6.7016 -0.3028 23 6 5.7372 -6.8213 0.9721 24 6 6.9726 -6.2761 1.2681 25 6 7.6845 -5.6062 0.2907 26 6 7.1654 -5.4899 -0.9852 27 6 4.0678 -4.4306 -4.1860 28 7 4.9666 -4.2079 -5.1653 29 8 2.8845 -4.4752 -4.4477 30 1 -0.4851 0.8401 -0.0004 31 1 -0.1384 -1.5820 1.5532 32 1 -1.3250 -3.7006 1.8944 33 1 -0.5781 -5.7470 0.7557 34 1 1.3659 -5.7047 -0.7441 35 1 6.1781 -5.8657 -3.3943 36 1 4.7290 -6.7662 -2.8870 37 1 4.2518 -7.1286 -0.5344 38 1 5.1789 -7.3408 1.7369 39 1 7.3796 -6.3701 2.2640 40 1 8.6477 -5.1765 0.5232 41 1 7.7233 -4.9698 -1.7498 42 1 5.9131 -4.1720 -4.9561 43 1 4.6669 -4.0836 -6.0795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754773810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:22 Heat of formation + Delta-G solvation = -84.058973 kcal Electronic energy + Delta-G solvation = -29228.274988 eV Core-core repulsion = 25202.736300 eV Total energy + Delta-G solvation = -4025.538688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.26136 -39.01530 -38.64290 -37.14360 -35.41960 -34.05284 -33.70099 -32.91579 -30.82209 -30.16774 -29.69245 -28.95021 -25.60239 -24.76904 -22.84695 -22.49201 -21.24766 -21.08865 -20.30655 -19.60972 -17.71173 -17.44740 -17.12274 -16.72811 -16.41240 -15.61152 -15.28197 -15.14419 -14.98381 -14.61490 -14.48271 -14.19394 -13.57549 -13.47409 -13.37275 -13.15115 -12.87257 -12.75601 -12.63649 -12.36233 -12.07999 -11.70629 -11.31539 -11.14757 -11.13644 -11.06005 -10.90265 -10.68877 -10.60318 -10.59123 -10.17052 -9.69686 -9.67019 -9.51789 -9.31284 -8.84800 -8.80198 -8.64024 -7.61570 -7.40271 -6.85873 -4.46319 1.36686 1.48530 2.23235 2.70969 2.81876 3.05934 3.12524 3.19267 3.22689 3.65922 3.84165 3.92164 3.99799 4.61372 4.63918 4.83924 4.90735 5.05094 5.12094 5.13330 5.26152 5.28089 5.54185 5.58300 5.68148 5.76147 6.04742 6.08782 6.14081 6.16310 6.38427 6.49503 6.55558 6.58897 6.67146 6.78372 6.95130 7.06092 7.08017 7.15890 7.24434 7.33477 7.48159 7.65199 7.92145 7.96210 8.16350 8.30752 8.58127 8.73064 8.81009 9.08721 10.08811 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.004229 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.174287 B = 6618.959760 C = 7078.905139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.416 4.416 8 H 0.104 0.896 9 C 0.148 3.852 10 C -0.149 4.149 11 C -0.090 4.090 12 C -0.248 4.248 13 C -0.034 4.034 14 C -0.244 4.244 15 C 0.510 3.490 16 O -0.516 6.516 17 O -0.334 6.334 18 C 0.078 3.922 19 H 0.107 0.893 20 C -0.069 4.069 21 C -0.085 4.085 22 C -0.094 4.094 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.117 4.117 27 C 0.504 3.496 28 N -0.855 5.855 29 O -0.517 6.517 30 H 0.284 0.716 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.399 0.601 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.589 -9.513 -2.615 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.149 4.149 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.444 4.444 8 H 0.121 0.879 9 C 0.144 3.856 10 C -0.168 4.168 11 C -0.109 4.109 12 C -0.267 4.267 13 C -0.053 4.053 14 C -0.247 4.247 15 C 0.361 3.639 16 O -0.407 6.407 17 O -0.252 6.252 18 C 0.018 3.982 19 H 0.125 0.875 20 C -0.107 4.107 21 C -0.085 4.085 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.135 4.135 27 C 0.288 3.712 28 N -0.422 5.422 29 O -0.391 6.391 30 H 0.095 0.905 31 H 0.137 0.863 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.227 0.773 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 12.720 -9.101 -2.669 15.866 hybrid contribution 0.597 1.022 -0.481 1.278 sum 13.317 -8.078 -3.150 15.891 Atomic orbital electron populations 1.69706 1.07790 1.29810 1.33712 1.26133 0.94832 1.01834 0.92109 0.86143 0.80468 0.79704 0.79498 1.19234 1.20093 1.18221 1.20170 0.97275 0.89613 1.37320 0.87863 1.17447 0.90142 0.90918 0.87083 1.21291 0.98367 0.96499 1.00656 1.20852 0.98021 0.93503 0.98479 1.20348 1.01946 0.97442 1.06939 1.20817 0.93873 0.95699 0.94876 1.18695 1.00915 0.96798 1.08313 1.21437 0.83620 0.80544 0.78278 1.90712 1.58855 1.30656 1.60433 1.86742 1.43837 1.37252 1.57342 1.22230 0.88497 1.00471 0.87012 0.87527 1.20633 0.98306 0.96918 0.94801 1.19632 0.94689 0.98913 0.95263 1.21128 0.99198 0.98029 0.92799 1.21179 0.95758 0.99961 0.96696 1.21148 0.95325 0.98389 0.99125 1.21066 1.00056 0.99623 0.93371 1.20996 0.95583 0.99888 0.97046 1.21035 0.86579 0.75741 0.87870 1.43800 1.10305 1.76940 1.11121 1.90797 1.16595 1.48420 1.83250 0.90492 0.86252 0.88873 0.88819 0.88008 0.89031 0.89205 0.85552 0.86005 0.86331 0.86279 0.86247 0.77279 0.76768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.49 11.13 55.57 0.62 -19.87 16 2 C 0.07 1.81 5.25 -17.30 -0.09 1.72 16 3 Si 0.92 19.61 29.57 -169.99 -5.03 14.58 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.42 -11.52 7.67 -37.82 -0.29 -11.82 16 8 H 0.10 2.93 5.93 -52.49 -0.31 2.61 16 9 C 0.15 4.06 5.51 -106.53 -0.59 3.47 16 10 C -0.15 -3.83 8.62 -38.88 -0.34 -4.17 16 11 C -0.09 -2.06 10.01 -39.59 -0.40 -2.46 16 12 C -0.25 -5.50 10.03 -39.37 -0.39 -5.89 16 13 C -0.03 -0.80 9.60 -39.20 -0.38 -1.17 16 14 C -0.24 -6.36 5.92 -104.39 -0.62 -6.97 16 15 C 0.51 12.69 7.81 34.41 0.27 12.96 16 16 O -0.52 -13.72 12.86 -19.29 -0.25 -13.96 16 17 O -0.33 -6.92 8.19 -47.44 -0.39 -7.31 16 18 C 0.08 1.25 2.35 -27.88 -0.07 1.18 16 19 H 0.11 1.75 7.16 -51.93 -0.37 1.38 16 20 C -0.07 -0.80 5.03 -27.89 -0.14 -0.94 16 21 C -0.08 -1.07 4.97 -104.62 -0.52 -1.59 16 22 C -0.09 -1.26 9.40 -39.58 -0.37 -1.63 16 23 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 24 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 25 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 27 C 0.50 8.26 7.42 -10.98 -0.08 8.18 16 28 N -0.86 -8.89 8.77 31.22 0.27 -8.61 16 29 O -0.52 -11.24 17.35 -14.04 -0.24 -11.48 16 30 H 0.28 6.70 8.29 -40.82 -0.34 6.36 16 31 H 0.12 3.09 6.58 -52.49 -0.35 2.75 16 32 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 34 H 0.10 2.15 7.61 -52.49 -0.40 1.75 16 35 H 0.09 0.71 7.71 -51.93 -0.40 0.31 16 36 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.40 2.65 8.54 -40.82 -0.35 2.30 16 43 H 0.40 3.67 8.93 -40.82 -0.36 3.30 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -34.62 373.88 -10.01 -44.63 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.06 Total: 12.69 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -5.58 Total: -16.30 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 0.89 Total: -28.48 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.88 Total: -32.75 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.62 -10.01 -44.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754773810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.425 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds