Wall clock time and date at job start Tue Mar 31 2020 22:31:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30632 * 1
3 3 Si 1.86801 * 120.00012 * 2 1
4 4 H 1.48503 * 109.46931 * 270.00401 * 3 2 1
5 5 H 1.48498 * 109.46965 * 30.00038 * 3 2 1
6 6 H 1.48500 * 109.47328 * 150.00442 * 3 2 1
7 7 C 1.40250 * 120.00017 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99801 * 197.73545 * 7 2 1
9 9 C 1.41091 * 119.99951 * 17.74137 * 7 2 1
10 10 C 1.40901 * 120.09822 * 24.79101 * 9 7 2
11 11 C 1.36300 * 119.89267 * 180.23439 * 10 9 7
12 12 C 1.40059 * 120.10451 * 359.51999 * 11 10 9
13 13 C 1.47511 * 119.90250 * 180.27974 * 12 11 10
14 14 O 1.21509 * 119.99712 * 359.97438 * 13 12 11
15 15 O 1.34779 * 120.00122 * 180.02562 * 13 12 11
16 16 C 1.45197 * 117.00027 * 179.97438 * 15 13 12
17 17 H 1.09001 * 109.47171 * 30.00019 * 16 15 13
18 18 C 1.53003 * 109.47174 * 149.99641 * 16 15 13
19 19 C 1.50702 * 109.47028 * 295.00452 * 18 16 15
20 20 C 1.38241 * 119.99582 * 269.72238 * 19 18 16
21 21 C 1.38234 * 119.99615 * 179.76718 * 20 19 18
22 22 C 1.38228 * 119.99979 * 0.50816 * 21 20 19
23 23 C 1.38234 * 120.00644 * 359.74684 * 22 21 20
24 24 C 1.38228 * 120.00150 * 89.99774 * 19 18 16
25 25 C 1.50695 * 109.47405 * 269.99749 * 16 15 13
26 26 N 1.34772 * 120.00571 * 179.97438 * 25 16 15
27 27 O 1.21288 * 119.99795 * 359.97438 * 25 16 15
28 28 C 1.40067 * 120.20103 * 0.25631 * 12 11 10
29 29 C 1.36301 * 120.09773 * 359.97438 * 28 12 11
30 30 H 0.97002 * 120.00168 * 359.97438 * 1 2 3
31 31 H 1.08000 * 120.05183 * 0.02562 * 10 9 7
32 32 H 1.08010 * 119.94686 * 179.80160 * 11 10 9
33 33 H 1.09004 * 109.46530 * 54.99935 * 18 16 15
34 34 H 1.08998 * 109.47268 * 175.00176 * 18 16 15
35 35 H 1.07997 * 120.00012 * 0.02562 * 20 19 18
36 36 H 1.08007 * 119.99539 * 180.22954 * 21 20 19
37 37 H 1.08002 * 120.00033 * 179.72141 * 22 21 20
38 38 H 1.07993 * 120.00376 * 179.97438 * 23 22 21
39 39 H 1.07997 * 120.00358 * 0.02562 * 24 19 18
40 40 H 0.97003 * 119.99546 * 0.02562 * 26 25 16
41 41 H 0.96999 * 120.00204 * 179.97438 * 26 25 16
42 42 H 1.07992 * 119.95311 * 180.02562 * 28 12 11
43 43 H 1.08003 * 120.04977 * 180.02562 * 29 28 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3063 0.0000 0.0000
3 14 2.2403 1.6177 0.0000
4 1 2.4877 2.0464 -1.4001
5 1 1.4378 2.6526 0.7000
6 1 3.5379 1.4402 0.6999
7 6 2.0076 -1.2146 -0.0005
8 1 3.0491 -1.2369 0.2844
9 6 1.3524 -2.4073 -0.3734
10 6 0.2236 -2.3599 -1.2153
11 6 -0.4089 -3.5142 -1.5690
12 6 0.0675 -4.7469 -1.1051
13 6 -0.6168 -5.9939 -1.4957
14 8 -1.5926 -5.9507 -2.2185
15 8 -0.1604 -7.1812 -1.0501
16 6 -0.8835 -8.3667 -1.4742
17 1 -1.3245 -8.1917 -2.4555
18 6 0.0812 -9.5517 -1.5527
19 6 1.1008 -9.2987 -2.6332
20 6 0.8548 -9.7177 -3.9274
21 6 1.7880 -9.4813 -4.9195
22 6 2.9715 -8.8353 -4.6153
23 6 3.2199 -8.4210 -3.3201
24 6 2.2844 -8.6527 -2.3290
25 6 -1.9744 -8.6721 -0.4805
26 7 -2.7804 -9.7355 -0.6700
27 8 -2.1272 -7.9609 0.4900
28 6 1.1921 -4.7992 -0.2719
29 6 1.8282 -3.6496 0.0908
30 1 -0.4850 0.8400 0.0004
31 1 -0.1418 -1.4101 -1.5770
32 1 -1.2763 -3.4787 -2.2118
33 1 0.5884 -9.6712 -0.5953
34 1 -0.4762 -10.4593 -1.7844
35 1 -0.0682 -10.2260 -4.1642
36 1 1.5941 -9.8054 -5.9314
37 1 3.7026 -8.6546 -5.3895
38 1 4.1448 -7.9166 -3.0825
39 1 2.4787 -8.3296 -1.3170
40 1 -2.6580 -10.3046 -1.4460
41 1 -3.4824 -9.9323 -0.0302
42 1 1.5563 -5.7519 0.0832
43 1 2.6955 -3.6909 0.7330
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000754863715.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:33
Heat of formation + Delta-G solvation = -92.292491 kcal
Electronic energy + Delta-G solvation = -28414.061769 eV
Core-core repulsion = 24388.166049 eV
Total energy + Delta-G solvation = -4025.895720 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.130 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.43118 -39.10745 -38.77336 -37.35232 -35.70870 -34.19051 -33.92286 -33.00880
-30.89223 -30.30474 -29.63626 -29.13125 -26.16840 -24.82907 -22.70382 -22.46857
-21.32577 -21.13874 -20.39572 -19.79916 -17.88219 -17.55896 -17.31563 -16.84621
-16.68373 -15.87261 -15.44175 -15.23416 -15.09810 -14.80264 -14.58026 -14.02671
-13.69565 -13.54165 -13.44190 -13.27782 -12.97593 -12.87190 -12.64693 -12.35638
-12.18569 -11.90674 -11.46130 -11.35841 -11.26893 -11.18832 -11.03577 -10.97552
-10.88482 -10.62749 -10.09574 -9.79517 -9.67763 -9.56366 -9.44869 -9.36581
-8.90913 -8.73157 -7.71156 -7.60261 -7.05873 -4.64337 1.28987 1.41277
2.08979 2.57279 2.88463 2.94745 2.97837 3.04952 3.06997 3.50136
3.70992 3.73661 3.79235 4.48394 4.53440 4.75338 4.77264 4.96714
5.00876 5.03639 5.14381 5.20040 5.46856 5.55651 5.59970 5.65926
5.93984 5.98911 6.04986 6.23391 6.28837 6.42343 6.52232 6.58806
6.65793 6.77669 6.83775 6.94731 6.99744 7.08503 7.12287 7.17623
7.44484 7.64573 7.81921 7.90337 8.04176 8.17710 8.39332 8.59806
8.72024 8.76008 9.85537
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.012739 B = 0.003049 C = 0.002633
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2197.375493 B = 9180.160955 C =10631.444633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.764 5.764
2 C 0.073 3.927
3 Si 0.916 3.084
4 H -0.264 1.264
5 H -0.274 1.274
6 H -0.258 1.258
7 C -0.436 4.436
8 H 0.087 0.913
9 C 0.132 3.868
10 C -0.184 4.184
11 C -0.032 4.032
12 C -0.268 4.268
13 C 0.520 3.480
14 O -0.551 6.551
15 O -0.327 6.327
16 C 0.077 3.923
17 H 0.109 0.891
18 C -0.070 4.070
19 C -0.088 4.088
20 C -0.118 4.118
21 C -0.124 4.124
22 C -0.121 4.121
23 C -0.117 4.117
24 C -0.094 4.094
25 C 0.504 3.496
26 N -0.855 5.855
27 O -0.517 6.517
28 C -0.025 4.025
29 C -0.240 4.240
30 H 0.289 0.711
31 H 0.123 0.877
32 H 0.101 0.899
33 H 0.091 0.909
34 H 0.092 0.908
35 H 0.120 0.880
36 H 0.120 0.880
37 H 0.119 0.881
38 H 0.123 0.877
39 H 0.127 0.873
40 H 0.399 0.601
41 H 0.402 0.598
42 H 0.101 0.899
43 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.909 -17.477 -6.254 18.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.386 5.386
2 C -0.150 4.150
3 Si 0.739 3.261
4 H -0.188 1.188
5 H -0.199 1.199
6 H -0.182 1.182
7 C -0.463 4.463
8 H 0.105 0.895
9 C 0.129 3.871
10 C -0.203 4.203
11 C -0.051 4.051
12 C -0.271 4.271
13 C 0.372 3.628
14 O -0.444 6.444
15 O -0.243 6.243
16 C 0.017 3.983
17 H 0.126 0.874
18 C -0.107 4.107
19 C -0.088 4.088
20 C -0.136 4.136
21 C -0.142 4.142
22 C -0.139 4.139
23 C -0.135 4.135
24 C -0.112 4.112
25 C 0.287 3.713
26 N -0.421 5.421
27 O -0.390 6.390
28 C -0.043 4.043
29 C -0.259 4.259
30 H 0.100 0.900
31 H 0.140 0.860
32 H 0.119 0.881
33 H 0.109 0.891
34 H 0.111 0.889
35 H 0.138 0.862
36 H 0.138 0.862
37 H 0.137 0.863
38 H 0.141 0.859
39 H 0.145 0.855
40 H 0.228 0.772
41 H 0.234 0.766
42 H 0.119 0.881
43 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 1.483 -16.718 -5.850 17.774
hybrid contribution -0.231 0.364 -0.170 0.463
sum 1.252 -16.354 -6.020 17.472
Atomic orbital electron populations
1.69748 1.08000 1.30332 1.30520 1.26164 0.94836 1.02066 0.91930
0.86169 0.80531 0.79645 0.79717 1.18840 1.19939 1.18199 1.19922
0.98416 0.91169 1.36785 0.89479 1.17838 0.90263 0.92231 0.86783
1.20965 1.00073 0.96798 1.02477 1.20449 0.97044 0.91218 0.96404
1.18158 1.04483 0.88481 1.15974 1.21634 0.81692 0.83232 0.76232
1.90677 1.28076 1.87116 1.38529 1.86730 1.53963 1.14029 1.69609
1.22302 0.91678 0.86244 0.98106 0.87376 1.20656 0.95692 0.95034
0.99351 1.19630 0.95370 0.99571 0.94189 1.20997 0.99305 1.00752
0.92514 1.21074 0.94382 0.99723 0.98985 1.21165 0.97409 0.98671
0.96670 1.21206 0.99665 0.99491 0.93145 1.21147 0.93091 0.96834
1.00114 1.20994 0.82852 0.80463 0.86959 1.43797 1.37200 1.30857
1.30268 1.90817 1.70503 1.47768 1.29909 1.20513 0.93003 0.97234
0.93572 1.20701 1.04612 0.92611 1.07974 0.89990 0.85959 0.88133
0.89050 0.88920 0.86237 0.86238 0.86253 0.85869 0.85474 0.77238
0.76643 0.88057 0.88233
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -18.73 10.95 55.56 0.61 -18.12 16
2 C 0.07 1.70 5.14 -17.31 -0.09 1.62 16
3 Si 0.92 17.32 29.60 -169.99 -5.03 12.29 16
4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16
5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16
6 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16
7 C -0.44 -10.86 9.04 -37.74 -0.34 -11.20 16
8 H 0.09 2.04 7.91 -52.49 -0.42 1.63 16
9 C 0.13 3.42 5.57 -106.80 -0.60 2.82 16
10 C -0.18 -4.78 8.63 -39.27 -0.34 -5.12 16
11 C -0.03 -0.82 9.52 -39.60 -0.38 -1.19 16
12 C -0.27 -6.59 5.89 -104.75 -0.62 -7.21 16
13 C 0.52 12.05 7.82 34.51 0.27 12.32 16
14 O -0.55 -13.49 15.58 -19.27 -0.30 -13.79 16
15 O -0.33 -6.39 8.15 -47.39 -0.39 -6.77 16
16 C 0.08 1.14 2.35 -27.88 -0.07 1.07 16
17 H 0.11 1.63 7.16 -51.93 -0.37 1.26 16
18 C -0.07 -0.74 5.01 -27.88 -0.14 -0.88 16
19 C -0.09 -1.03 4.97 -104.62 -0.52 -1.55 16
20 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16
21 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16
22 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16
23 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16
24 C -0.09 -1.20 9.40 -39.58 -0.37 -1.57 16
25 C 0.50 7.66 7.48 -10.99 -0.08 7.57 16
26 N -0.85 -7.83 8.74 31.22 0.27 -7.56 16
27 O -0.52 -10.70 17.31 -14.11 -0.24 -10.94 16
28 C -0.02 -0.57 9.55 -39.59 -0.38 -0.95 16
29 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16
30 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16
31 H 0.12 3.21 6.16 -52.49 -0.32 2.88 16
32 H 0.10 2.48 7.63 -52.48 -0.40 2.08 16
33 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16
34 H 0.09 0.62 7.37 -51.93 -0.38 0.24 16
35 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16
36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16
37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16
38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16
39 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16
40 H 0.40 2.15 8.19 -40.82 -0.33 1.82 16
41 H 0.40 3.21 8.93 -40.82 -0.36 2.84 16
42 H 0.10 2.10 7.59 -52.49 -0.40 1.70 16
43 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16
LS Contribution 377.26 15.07 5.69 5.69
Total: -1.00 -33.48 377.26 -10.08 -43.57
By element:
Atomic # 1 Polarization: 17.96 SS G_CDS: -5.08 Total: 12.87 kcal
Atomic # 6 Polarization: -11.62 SS G_CDS: -5.61 Total: -17.23 kcal
Atomic # 7 Polarization: -26.56 SS G_CDS: 0.88 Total: -25.68 kcal
Atomic # 8 Polarization: -30.58 SS G_CDS: -0.93 Total: -31.51 kcal
Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -33.48 -10.08 -43.57 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000754863715.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.726 kcal
(2) G-P(sol) polarization free energy of solvation -33.484 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds