Wall clock time and date at job start Tue Mar 31 2020 22:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86804 * 119.99397 * 2 1 4 4 H 1.48495 * 109.47323 * 269.99936 * 3 2 1 5 5 H 1.48495 * 109.47150 * 30.00679 * 3 2 1 6 6 H 1.48505 * 109.46556 * 150.00590 * 3 2 1 7 7 C 1.38693 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00012 * 179.97438 * 7 2 1 9 9 O 1.34810 * 120.00209 * 0.26955 * 7 2 1 10 10 C 1.35518 * 117.00488 * 174.66660 * 9 7 2 11 11 C 1.38831 * 120.15947 * 5.59237 * 10 9 7 12 12 C 1.38029 * 120.07257 * 179.70165 * 11 10 9 13 13 C 1.38564 * 120.40100 * 0.60166 * 12 11 10 14 14 C 1.37829 * 120.32292 * 359.68223 * 13 12 11 15 15 C 1.39668 * 119.91818 * 0.02562 * 14 13 12 16 16 C 1.47535 * 120.19326 * 180.02562 * 15 14 13 17 17 O 1.21593 * 119.99898 * 179.97438 * 16 15 14 18 18 N 1.34778 * 120.00507 * 359.97438 * 16 15 14 19 19 C 1.46503 * 120.00128 * 179.97438 * 18 16 15 20 20 H 1.09000 * 110.72875 * 34.30311 * 19 18 16 21 21 C 1.54342 * 110.82512 * 270.88864 * 19 18 16 22 22 C 1.51686 * 105.02041 * 215.58784 * 21 19 18 23 23 C 1.38539 * 130.28160 * 197.07792 * 22 21 19 24 24 C 1.38126 * 120.33919 * 179.83078 * 23 22 21 25 25 C 1.38163 * 119.99420 * 359.97438 * 24 23 22 26 26 C 1.38604 * 119.87079 * 0.02562 * 25 24 23 27 27 O 1.35901 * 119.94627 * 179.97438 * 26 25 24 28 28 C 1.38128 * 109.84039 * 16.91492 * 22 21 19 29 29 C 1.51362 * 109.78307 * 0.15904 * 28 22 21 30 30 H 0.96999 * 120.00136 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.96153 * 0.02562 * 11 10 9 32 32 H 1.08002 * 119.79744 * 180.30348 * 12 11 10 33 33 H 1.08002 * 119.84026 * 179.69625 * 13 12 11 34 34 H 1.08000 * 120.04255 * 179.97438 * 14 13 12 35 35 H 0.97000 * 119.99525 * 359.97438 * 18 16 15 36 36 H 1.08997 * 110.30414 * 334.36604 * 21 19 18 37 37 H 1.09002 * 110.30395 * 96.52151 * 21 19 18 38 38 H 1.08006 * 119.83175 * 359.80712 * 23 22 21 39 39 H 1.08002 * 120.00435 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.06434 * 180.02562 * 25 24 23 41 41 H 0.96707 * 113.99721 * 269.99638 * 27 26 25 42 42 H 1.09006 * 110.30511 * 223.89816 * 29 28 22 43 43 H 1.08998 * 110.39038 * 101.78942 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3348 -2.3686 -0.0066 10 6 2.0688 -3.5022 -0.1190 11 6 3.4556 -3.4395 -0.1049 12 6 4.2015 -4.5959 -0.2133 13 6 3.5748 -5.8243 -0.3493 14 6 2.1991 -5.9050 -0.3711 15 6 1.4312 -4.7440 -0.2563 16 6 -0.0418 -4.8235 -0.2784 17 8 -0.7069 -3.8105 -0.1777 18 7 -0.6504 -6.0188 -0.4102 19 6 -2.1131 -6.0976 -0.4316 20 1 -2.5396 -5.2218 -0.9205 21 6 -2.6750 -6.2566 0.9971 22 6 -3.8790 -7.1669 0.8470 23 6 -4.9374 -7.4018 1.7096 24 6 -5.9407 -8.2840 1.3588 25 6 -5.8922 -8.9369 0.1422 26 6 -4.8352 -8.7051 -0.7240 27 8 -4.7857 -9.3469 -1.9209 28 6 -3.8259 -7.8176 -0.3702 29 6 -2.5826 -7.3952 -1.1231 30 1 -0.4850 0.8400 0.0004 31 1 3.9514 -2.4853 -0.0037 32 1 5.2800 -4.5424 -0.1969 33 1 4.1673 -6.7228 -0.4383 34 1 1.7154 -6.8647 -0.4777 35 1 -0.1199 -6.8268 -0.4909 36 1 -1.9315 -6.7184 1.6468 37 1 -2.9764 -5.2876 1.3950 38 1 -4.9780 -6.8929 2.6613 39 1 -6.7631 -8.4634 2.0355 40 1 -6.6762 -9.6266 -0.1334 41 1 -4.3202 -10.1941 -1.8939 42 1 -2.8212 -7.2015 -2.1689 43 1 -1.8134 -8.1638 -1.0475 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760608818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:04 Heat of formation + Delta-G solvation = -71.750327 kcal Electronic energy + Delta-G solvation = -28099.307684 eV Core-core repulsion = 24074.302740 eV Total energy + Delta-G solvation = -4025.004945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.68101 -41.06952 -39.81936 -38.26418 -37.99130 -36.75776 -34.38117 -34.20594 -31.99050 -31.31689 -30.56274 -29.13333 -28.23322 -27.35690 -24.94268 -23.51937 -22.89365 -22.23985 -21.89719 -21.44238 -19.84062 -19.25853 -18.93900 -17.93481 -17.34186 -17.09219 -16.67264 -16.35220 -16.17756 -16.11927 -15.82490 -15.72989 -15.35543 -15.18778 -14.81285 -14.53028 -14.33313 -14.22907 -13.88990 -13.68202 -13.54394 -13.42710 -13.03839 -12.93413 -12.68955 -12.59506 -12.51527 -12.33325 -12.21605 -12.13501 -12.10085 -11.46682 -11.42623 -10.83345 -10.63330 -10.14700 -9.79340 -9.57718 -9.51674 -9.03147 -8.44531 -6.15508 0.12771 0.27319 0.30732 0.73675 1.31874 1.43554 1.50853 2.08490 2.15330 2.18489 2.62963 2.87762 3.21282 3.28177 3.35514 3.47640 3.54772 3.91952 3.97504 4.05010 4.06326 4.11968 4.20153 4.30243 4.45618 4.53216 4.53946 4.62184 4.64626 4.77329 4.81059 4.90300 4.99785 5.04468 5.08049 5.09214 5.15078 5.37597 5.45283 5.48768 5.55420 5.59681 5.62047 5.70662 5.88754 5.96179 6.17913 6.68940 6.88549 6.94863 7.48180 7.80788 8.75892 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.002720 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.182205 B =10291.928858 C =11697.613067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.022 4.022 3 Si 1.021 2.979 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.427 4.427 8 H 0.107 0.893 9 O -0.189 6.189 10 C 0.148 3.852 11 C -0.259 4.259 12 C -0.040 4.040 13 C -0.200 4.200 14 C -0.029 4.029 15 C -0.244 4.244 16 C 0.550 3.450 17 O -0.566 6.566 18 N -0.707 5.707 19 C 0.148 3.852 20 H 0.062 0.938 21 C -0.092 4.092 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.099 4.099 25 C -0.150 4.150 26 C 0.115 3.885 27 O -0.507 6.507 28 C -0.134 4.134 29 C -0.065 4.065 30 H 0.270 0.730 31 H 0.122 0.878 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.409 0.591 42 H 0.083 0.917 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 -23.226 0.413 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.503 4.503 8 H 0.124 0.876 9 O -0.091 6.091 10 C 0.093 3.907 11 C -0.278 4.278 12 C -0.058 4.058 13 C -0.219 4.219 14 C -0.047 4.047 15 C -0.249 4.249 16 C 0.340 3.660 17 O -0.445 6.445 18 N -0.362 5.362 19 C 0.042 3.958 20 H 0.081 0.919 21 C -0.130 4.130 22 C -0.088 4.088 23 C -0.146 4.146 24 C -0.116 4.116 25 C -0.169 4.169 26 C 0.071 3.929 27 O -0.320 6.320 28 C -0.135 4.135 29 C -0.103 4.103 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.171 0.829 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.253 0.747 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.150 0.850 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.268 0.732 42 H 0.102 0.898 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.961 -21.826 0.295 22.184 hybrid contribution 0.507 0.769 0.211 0.945 sum -3.454 -21.056 0.506 21.344 Atomic orbital electron populations 1.70325 1.08349 1.28525 1.46888 1.26749 0.96727 1.03103 0.95572 0.84572 0.77923 0.74242 0.79295 1.18743 1.19761 1.17046 1.22026 0.92675 0.81831 1.53759 0.87605 1.84177 1.35154 1.12192 1.77606 1.20101 0.91670 0.87625 0.91282 1.21302 0.92343 1.00968 1.13174 1.21437 1.00700 0.91308 0.92380 1.21182 0.93991 0.98424 1.08271 1.21322 0.94423 0.95613 0.93331 1.19274 0.92234 0.92966 1.20421 1.18558 0.88237 0.83332 0.75828 1.90940 1.67074 1.36578 1.49870 1.45568 1.06157 1.08453 1.76031 1.21380 0.80247 0.98664 0.95492 0.91922 1.21475 0.95382 0.98230 0.97950 1.20525 0.95944 0.97382 0.94964 1.20943 0.93756 0.99702 1.00236 1.21251 0.98556 0.95216 0.96611 1.21595 0.99112 1.02355 0.93801 1.18134 0.93515 0.95329 0.85949 1.84777 1.80014 1.39424 1.27789 1.20816 0.96891 0.99788 0.96035 1.21048 0.94801 0.95313 0.99093 0.92086 0.86003 0.82919 0.81773 0.82004 0.74713 0.88845 0.92591 0.85018 0.82574 0.83030 0.73191 0.89807 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.68 13.67 21.62 0.30 -59.38 16 2 C -0.02 -1.34 5.49 84.85 0.47 -0.87 16 3 Si 1.02 44.58 29.55 68.60 2.03 46.61 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 7 C -0.43 -25.97 9.49 67.93 0.64 -25.33 16 8 H 0.11 5.77 5.21 -2.91 -0.02 5.75 16 9 O -0.19 -12.06 7.84 0.90 0.01 -12.05 16 10 C 0.15 7.64 6.66 22.90 0.15 7.79 16 11 C -0.26 -11.01 9.16 22.36 0.20 -10.81 16 12 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 13 C -0.20 -5.18 10.02 22.25 0.22 -4.96 16 14 C -0.03 -0.83 9.54 22.52 0.21 -0.62 16 15 C -0.24 -10.47 5.89 -19.99 -0.12 -10.59 16 16 C 0.55 24.77 7.76 86.70 0.67 25.44 16 17 O -0.57 -33.47 14.85 16.89 0.25 -33.22 16 18 N -0.71 -21.96 5.10 -441.36 -2.25 -24.21 16 19 C 0.15 4.49 3.39 45.90 0.16 4.65 16 20 H 0.06 2.42 7.62 -2.39 -0.02 2.40 16 21 C -0.09 -2.68 6.52 30.62 0.20 -2.48 16 22 C -0.09 -2.17 6.14 -19.50 -0.12 -2.29 16 23 C -0.13 -2.70 10.03 22.31 0.22 -2.47 16 24 C -0.10 -1.64 10.04 22.23 0.22 -1.41 16 25 C -0.15 -2.52 9.98 22.34 0.22 -2.30 16 26 C 0.12 2.27 6.70 22.54 0.15 2.42 16 27 O -0.51 -8.42 13.45 -92.44 -1.24 -9.66 16 28 C -0.13 -3.05 6.11 -19.50 -0.12 -3.17 16 29 C -0.07 -1.42 6.42 30.52 0.20 -1.22 16 30 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 31 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 32 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.16 3.01 6.40 -2.91 -0.02 3.00 16 35 H 0.41 8.89 6.43 -92.71 -0.60 8.30 16 36 H 0.09 2.50 8.08 -2.39 -0.02 2.48 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.41 2.56 9.06 -74.05 -0.67 1.89 16 42 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.11 1.74 7.79 -2.39 -0.02 1.72 16 Total: -1.00 -91.95 366.28 2.72 -89.22 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.18 Total: 31.91 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 3.82 Total: -29.21 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -1.96 Total: -83.59 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -0.99 Total: -54.94 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -91.95 2.72 -89.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760608818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.473 kcal (2) G-P(sol) polarization free energy of solvation -91.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds