Wall clock time and date at job start Tue Mar 31 2020 22:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99888 * 2 1 4 4 H 1.48505 * 109.47201 * 270.00465 * 3 2 1 5 5 H 1.48503 * 109.47261 * 30.00255 * 3 2 1 6 6 H 1.48497 * 109.47245 * 150.00472 * 3 2 1 7 7 C 1.38695 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99968 * 359.97438 * 7 2 1 9 9 O 1.34823 * 120.00135 * 179.97438 * 7 2 1 10 10 C 1.35519 * 116.99813 * 185.04837 * 9 7 2 11 11 C 1.38834 * 120.16349 * 354.39748 * 10 9 7 12 12 C 1.38027 * 120.07121 * 179.97438 * 11 10 9 13 13 C 1.38570 * 120.40080 * 0.02562 * 12 11 10 14 14 C 1.37826 * 120.32514 * 359.74077 * 13 12 11 15 15 C 1.39667 * 119.91928 * 0.48587 * 14 13 12 16 16 C 1.47537 * 120.19880 * 179.79012 * 15 14 13 17 17 O 1.21587 * 120.00189 * 179.72513 * 16 15 14 18 18 N 1.34777 * 119.99959 * 359.72488 * 16 15 14 19 19 C 1.46495 * 120.00161 * 179.97438 * 18 16 15 20 20 H 1.09005 * 110.73473 * 328.41603 * 19 18 16 21 21 C 1.54353 * 110.99422 * 91.94545 * 19 18 16 22 22 C 1.51384 * 105.16702 * 144.63626 * 21 19 18 23 23 C 1.38542 * 130.35690 * 162.78350 * 22 21 19 24 24 C 1.38133 * 120.32881 * 180.29897 * 23 22 21 25 25 C 1.38158 * 119.99865 * 359.45491 * 24 23 22 26 26 C 1.38596 * 119.87258 * 0.55814 * 25 24 23 27 27 O 1.35903 * 119.95552 * 179.73672 * 26 25 24 28 28 C 1.38122 * 109.75983 * 342.81669 * 22 21 19 29 29 C 1.51363 * 109.78764 * 359.97438 * 28 22 21 30 30 H 0.96992 * 120.00174 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.96312 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.79921 * 180.02562 * 12 11 10 33 33 H 1.08003 * 119.83708 * 180.02562 * 13 12 11 34 34 H 1.08003 * 120.04180 * 180.25685 * 14 13 12 35 35 H 0.97001 * 120.00093 * 0.02562 * 18 16 15 36 36 H 1.08998 * 110.29976 * 25.71611 * 21 19 18 37 37 H 1.09000 * 110.30442 * 263.55687 * 21 19 18 38 38 H 1.08002 * 119.83893 * 0.02562 * 23 22 21 39 39 H 1.07997 * 119.99765 * 179.74744 * 24 23 22 40 40 H 1.08007 * 120.06028 * 180.24528 * 25 24 23 41 41 H 0.96696 * 113.99509 * 269.97415 * 27 26 25 42 42 H 1.08997 * 110.30088 * 136.11151 * 29 28 22 43 43 H 1.08997 * 110.30377 * 258.16712 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0087 -1.2011 -0.0005 8 1 1.4688 -2.1364 -0.0005 9 8 3.3570 -1.2011 -0.0011 10 6 3.9721 -2.4039 -0.1078 11 6 3.2244 -3.5736 -0.0935 12 6 3.8529 -4.7976 -0.2029 13 6 5.2312 -4.8695 -0.3270 14 6 5.9890 -3.7185 -0.3480 15 6 5.3675 -2.4730 -0.2334 16 6 6.1732 -1.2372 -0.2504 17 8 5.6280 -0.1546 -0.1555 18 7 7.5137 -1.3083 -0.3712 19 6 8.3137 -0.0812 -0.3887 20 1 7.7542 0.7378 -0.8408 21 6 8.7823 0.2937 1.0334 22 6 10.1624 0.8889 0.8516 23 6 10.9215 1.6716 1.7063 24 6 12.1723 2.1135 1.3212 25 6 12.6767 1.7659 0.0829 26 6 11.9208 0.9834 -0.7756 27 8 12.4131 0.6449 -1.9962 28 6 10.6600 0.5436 -0.3897 29 6 9.6496 -0.3079 -1.1281 30 1 -0.4850 0.8400 0.0004 31 1 2.1499 -3.5257 0.0034 32 1 3.2670 -5.7047 -0.1916 33 1 5.7135 -5.8321 -0.4124 34 1 7.0626 -3.7798 -0.4491 35 1 7.9487 -2.1719 -0.4473 36 1 8.8338 -0.5957 1.6614 37 1 8.1081 1.0292 1.4722 38 1 10.5316 1.9413 2.6767 39 1 12.7578 2.7268 1.9901 40 1 13.6563 2.1077 -0.2176 41 1 12.1954 1.2751 -2.6966 42 1 9.5672 0.0170 -2.1653 43 1 9.9357 -1.3587 -1.0831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760608820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:07 Heat of formation + Delta-G solvation = -47.349750 kcal Electronic energy + Delta-G solvation = -28227.450932 eV Core-core repulsion = 24203.504076 eV Total energy + Delta-G solvation = -4023.946856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.75578 -39.74586 -38.47315 -37.36351 -36.54853 -35.80395 -33.06421 -32.46942 -30.65784 -30.55137 -29.22518 -28.16122 -27.41113 -25.33346 -23.66076 -22.40391 -21.49610 -21.44175 -20.79200 -20.15221 -18.19868 -17.93093 -17.89158 -16.57304 -16.44323 -16.02142 -15.91692 -15.29999 -14.78814 -14.58386 -14.38326 -14.25563 -14.02384 -13.79956 -13.59027 -13.43825 -13.18119 -13.01766 -12.66673 -12.47274 -12.37184 -12.20727 -12.18566 -11.69744 -11.46587 -11.38326 -11.30180 -11.17316 -10.84714 -10.76859 -10.73769 -10.06967 -9.64884 -9.11132 -8.91279 -8.86296 -8.79768 -8.77600 -8.41022 -7.50396 -6.48984 -4.14148 0.98941 1.05022 1.54379 2.16696 3.29825 3.33084 3.36247 3.39906 3.50608 3.64352 3.96763 4.15891 4.33521 4.43186 4.50382 4.70939 4.74162 4.84512 4.96869 5.01234 5.07527 5.20074 5.24894 5.30527 5.36776 5.49905 5.59725 5.61789 5.67025 5.72004 5.85848 5.95429 6.01516 6.06965 6.09928 6.16766 6.34064 6.35319 6.52495 6.55828 6.74441 6.81044 6.98769 7.12696 7.37981 7.45772 7.65406 7.89232 7.93109 8.80836 8.86981 9.49346 10.56153 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.003043 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.743468 B = 9199.905195 C =10743.983351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.397 4.397 8 H 0.108 0.892 9 O -0.165 6.165 10 C 0.202 3.798 11 C -0.227 4.227 12 C -0.050 4.050 13 C -0.221 4.221 14 C -0.040 4.040 15 C -0.228 4.228 16 C 0.563 3.437 17 O -0.516 6.516 18 N -0.733 5.733 19 C 0.151 3.849 20 H 0.103 0.897 21 C -0.099 4.099 22 C -0.070 4.070 23 C -0.116 4.116 24 C -0.103 4.103 25 C -0.150 4.150 26 C 0.117 3.883 27 O -0.499 6.499 28 C -0.121 4.121 29 C -0.080 4.080 30 H 0.282 0.718 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.389 0.611 42 H 0.081 0.919 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.753 -0.687 -0.530 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.471 4.471 8 H 0.126 0.874 9 O -0.065 6.065 10 C 0.144 3.856 11 C -0.246 4.246 12 C -0.069 4.069 13 C -0.240 4.240 14 C -0.059 4.059 15 C -0.232 4.232 16 C 0.353 3.647 17 O -0.391 6.391 18 N -0.387 5.387 19 C 0.046 3.954 20 H 0.121 0.879 21 C -0.137 4.137 22 C -0.071 4.071 23 C -0.134 4.134 24 C -0.121 4.121 25 C -0.168 4.168 26 C 0.073 3.927 27 O -0.309 6.309 28 C -0.122 4.122 29 C -0.117 4.117 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.231 0.769 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.244 0.756 42 H 0.100 0.900 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 22.389 0.027 -0.143 22.390 hybrid contribution 0.229 0.510 -0.296 0.633 sum 22.619 0.536 -0.439 22.629 Atomic orbital electron populations 1.69635 1.05821 1.28976 1.46073 1.24495 0.94962 0.99306 0.94612 0.86198 0.81281 0.80424 0.79590 1.19945 1.21251 1.16114 1.20929 0.77113 0.96769 1.52338 0.87436 1.83778 1.22088 1.24948 1.75699 1.19020 0.90289 0.85815 0.90510 1.21292 1.01390 0.91656 1.10262 1.20972 0.94385 0.96780 0.94745 1.20543 0.94024 0.97341 1.12108 1.20763 0.98117 0.91280 0.95738 1.18824 0.91173 0.92798 1.20436 1.18223 0.81060 0.89438 0.75962 1.90857 1.70959 1.29346 1.47975 1.45869 1.06785 1.08274 1.77807 1.21415 0.90630 0.88993 0.94410 0.87866 1.21585 0.92028 1.01336 0.98736 1.20516 0.96302 0.96489 0.93747 1.20709 0.94459 0.98460 0.99791 1.20919 0.95510 0.99721 0.95999 1.21277 1.00612 0.99602 0.95336 1.18041 0.90696 0.96984 0.86969 1.84811 1.77480 1.51789 1.16840 1.20761 0.94081 1.00356 0.96962 1.21181 0.91615 0.99556 0.99371 0.90807 0.84412 0.86821 0.86992 0.86839 0.76903 0.89375 0.89679 0.85779 0.85414 0.85336 0.75551 0.90038 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.15 13.96 55.48 0.77 -24.38 16 2 C 0.07 2.05 5.49 -17.52 -0.10 1.96 16 3 Si 0.90 23.01 28.62 -169.99 -4.86 18.15 16 4 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.24 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.40 -11.25 9.95 30.90 0.31 -10.94 16 8 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 9 O -0.17 -4.48 6.67 -21.08 -0.14 -4.62 16 10 C 0.20 4.68 6.66 -38.60 -0.26 4.42 16 11 C -0.23 -4.72 9.16 -39.44 -0.36 -5.08 16 12 C -0.05 -0.84 10.03 -39.54 -0.40 -1.24 16 13 C -0.22 -3.35 10.02 -39.61 -0.40 -3.75 16 14 C -0.04 -0.62 9.54 -39.20 -0.37 -1.00 16 15 C -0.23 -4.49 5.89 -104.81 -0.62 -5.11 16 16 C 0.56 10.97 7.76 -12.47 -0.10 10.87 16 17 O -0.52 -12.42 14.81 -16.56 -0.25 -12.66 16 18 N -0.73 -10.31 5.10 -53.47 -0.27 -10.59 16 19 C 0.15 1.95 3.44 -66.51 -0.23 1.73 16 20 H 0.10 1.55 7.54 -51.93 -0.39 1.16 16 21 C -0.10 -1.21 6.50 -26.84 -0.17 -1.38 16 22 C -0.07 -0.79 6.14 -104.22 -0.64 -1.43 16 23 C -0.12 -1.15 10.04 -39.51 -0.40 -1.55 16 24 C -0.10 -0.90 10.04 -39.65 -0.40 -1.30 16 25 C -0.15 -1.36 9.98 -39.48 -0.39 -1.75 16 26 C 0.12 1.20 6.70 -39.17 -0.26 0.94 16 27 O -0.50 -4.50 13.45 -19.44 -0.26 -4.76 16 28 C -0.12 -1.32 6.11 -104.06 -0.64 -1.96 16 29 C -0.08 -0.83 6.42 -26.84 -0.17 -1.00 16 30 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.14 2.98 5.64 -52.49 -0.30 2.69 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.11 1.30 6.40 -52.48 -0.34 0.97 16 35 H 0.40 4.37 6.46 -40.82 -0.26 4.10 16 36 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.39 1.78 9.06 45.56 0.41 2.20 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.82 7.81 -51.93 -0.41 0.41 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -34.14 365.11 -9.18 -43.31 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.08 Total: 7.61 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -5.59 Total: -17.57 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.50 Total: -34.96 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.65 Total: -22.05 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.86 Total: 18.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.14 -9.18 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760608820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.036 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds