Wall clock time and date at job start Tue Mar 31 2020 22:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99888 * 2 1 4 4 H 1.48505 * 109.47201 * 270.00465 * 3 2 1 5 5 H 1.48503 * 109.47261 * 30.00255 * 3 2 1 6 6 H 1.48497 * 109.47245 * 150.00472 * 3 2 1 7 7 C 1.38695 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99968 * 359.97438 * 7 2 1 9 9 O 1.34823 * 120.00135 * 179.97438 * 7 2 1 10 10 C 1.35519 * 116.99813 * 185.04837 * 9 7 2 11 11 C 1.38834 * 120.16349 * 354.39748 * 10 9 7 12 12 C 1.38027 * 120.07121 * 179.97438 * 11 10 9 13 13 C 1.38570 * 120.40080 * 0.02562 * 12 11 10 14 14 C 1.37826 * 120.32514 * 359.74077 * 13 12 11 15 15 C 1.39667 * 119.91928 * 0.48587 * 14 13 12 16 16 C 1.47537 * 120.19880 * 179.79012 * 15 14 13 17 17 O 1.21587 * 120.00189 * 179.72513 * 16 15 14 18 18 N 1.34777 * 119.99959 * 359.72488 * 16 15 14 19 19 C 1.46495 * 120.00161 * 179.97438 * 18 16 15 20 20 H 1.09005 * 110.73473 * 328.41603 * 19 18 16 21 21 C 1.54353 * 110.99422 * 91.94545 * 19 18 16 22 22 C 1.51384 * 105.16702 * 144.63626 * 21 19 18 23 23 C 1.38542 * 130.35690 * 162.78350 * 22 21 19 24 24 C 1.38133 * 120.32881 * 180.29897 * 23 22 21 25 25 C 1.38158 * 119.99865 * 359.45491 * 24 23 22 26 26 C 1.38596 * 119.87258 * 0.55814 * 25 24 23 27 27 O 1.35903 * 119.95552 * 179.73672 * 26 25 24 28 28 C 1.38122 * 109.75983 * 342.81669 * 22 21 19 29 29 C 1.51363 * 109.78764 * 359.97438 * 28 22 21 30 30 H 0.96992 * 120.00174 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.96312 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.79921 * 180.02562 * 12 11 10 33 33 H 1.08003 * 119.83708 * 180.02562 * 13 12 11 34 34 H 1.08003 * 120.04180 * 180.25685 * 14 13 12 35 35 H 0.97001 * 120.00093 * 0.02562 * 18 16 15 36 36 H 1.08998 * 110.29976 * 25.71611 * 21 19 18 37 37 H 1.09000 * 110.30442 * 263.55687 * 21 19 18 38 38 H 1.08002 * 119.83893 * 0.02562 * 23 22 21 39 39 H 1.07997 * 119.99765 * 179.74744 * 24 23 22 40 40 H 1.08007 * 120.06028 * 180.24528 * 25 24 23 41 41 H 0.96696 * 113.99509 * 269.97415 * 27 26 25 42 42 H 1.08997 * 110.30088 * 136.11151 * 29 28 22 43 43 H 1.08997 * 110.30377 * 258.16712 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0087 -1.2011 -0.0005 8 1 1.4688 -2.1364 -0.0005 9 8 3.3570 -1.2011 -0.0011 10 6 3.9721 -2.4039 -0.1078 11 6 3.2244 -3.5736 -0.0935 12 6 3.8529 -4.7976 -0.2029 13 6 5.2312 -4.8695 -0.3270 14 6 5.9890 -3.7185 -0.3480 15 6 5.3675 -2.4730 -0.2334 16 6 6.1732 -1.2372 -0.2504 17 8 5.6280 -0.1546 -0.1555 18 7 7.5137 -1.3083 -0.3712 19 6 8.3137 -0.0812 -0.3887 20 1 7.7542 0.7378 -0.8408 21 6 8.7823 0.2937 1.0334 22 6 10.1624 0.8889 0.8516 23 6 10.9215 1.6716 1.7063 24 6 12.1723 2.1135 1.3212 25 6 12.6767 1.7659 0.0829 26 6 11.9208 0.9834 -0.7756 27 8 12.4131 0.6449 -1.9962 28 6 10.6600 0.5436 -0.3897 29 6 9.6496 -0.3079 -1.1281 30 1 -0.4850 0.8400 0.0004 31 1 2.1499 -3.5257 0.0034 32 1 3.2670 -5.7047 -0.1916 33 1 5.7135 -5.8321 -0.4124 34 1 7.0626 -3.7798 -0.4491 35 1 7.9487 -2.1719 -0.4473 36 1 8.8338 -0.5957 1.6614 37 1 8.1081 1.0292 1.4722 38 1 10.5316 1.9413 2.6767 39 1 12.7578 2.7268 1.9901 40 1 13.6563 2.1077 -0.2176 41 1 12.1954 1.2751 -2.6966 42 1 9.5672 0.0170 -2.1653 43 1 9.9357 -1.3587 -1.0831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760608820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:06 Heat of formation + Delta-G solvation = -70.396817 kcal Electronic energy + Delta-G solvation = -28228.450328 eV Core-core repulsion = 24203.504076 eV Total energy + Delta-G solvation = -4024.946252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72646 -41.16745 -39.91963 -38.31260 -38.09613 -36.77505 -34.54099 -34.28799 -32.05635 -31.31825 -30.79230 -29.15772 -28.23181 -27.27857 -25.01644 -23.51151 -22.81875 -22.24068 -21.91313 -21.55569 -19.81458 -19.45696 -18.90268 -18.08761 -17.51577 -17.01686 -16.77980 -16.52633 -16.20005 -15.98800 -15.85301 -15.70924 -15.45442 -15.32322 -14.77567 -14.64439 -14.39009 -14.23448 -14.03512 -13.90527 -13.72721 -13.35110 -13.15066 -12.97211 -12.84524 -12.66477 -12.56714 -12.39289 -12.23517 -12.07340 -12.01944 -11.53136 -11.47442 -10.97474 -10.74084 -10.19137 -9.84379 -9.57687 -9.51991 -9.14768 -8.58314 -6.27052 0.05118 0.26936 0.30630 0.65327 1.24128 1.29300 1.57442 2.00594 2.13027 2.28871 2.62485 2.75575 3.01708 3.15782 3.30368 3.32997 3.54828 3.88106 3.97256 4.01825 4.04306 4.07595 4.19891 4.26759 4.45207 4.48783 4.54377 4.58041 4.64198 4.77412 4.79149 4.80815 4.92652 5.02398 5.07238 5.09567 5.28960 5.37158 5.45031 5.47857 5.52918 5.57861 5.62217 5.69969 5.83667 5.87949 6.15842 6.61764 6.78892 6.84608 7.37700 7.58609 8.52276 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.003043 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.743468 B = 9199.905195 C =10743.983351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.026 3.974 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.402 4.402 8 H 0.092 0.908 9 O -0.209 6.209 10 C 0.162 3.838 11 C -0.252 4.252 12 C -0.042 4.042 13 C -0.189 4.189 14 C -0.029 4.029 15 C -0.233 4.233 16 C 0.558 3.442 17 O -0.570 6.570 18 N -0.706 5.706 19 C 0.147 3.853 20 H 0.075 0.925 21 C -0.094 4.094 22 C -0.087 4.087 23 C -0.127 4.127 24 C -0.100 4.100 25 C -0.151 4.151 26 C 0.113 3.887 27 O -0.507 6.507 28 C -0.134 4.134 29 C -0.067 4.067 30 H 0.286 0.714 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.415 0.585 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.407 0.593 42 H 0.090 0.910 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.491 -3.110 -1.017 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.109 0.891 9 O -0.113 6.113 10 C 0.108 3.892 11 C -0.271 4.271 12 C -0.060 4.060 13 C -0.208 4.208 14 C -0.048 4.048 15 C -0.237 4.237 16 C 0.348 3.652 17 O -0.450 6.450 18 N -0.360 5.360 19 C 0.042 3.958 20 H 0.093 0.907 21 C -0.132 4.132 22 C -0.088 4.088 23 C -0.145 4.145 24 C -0.118 4.118 25 C -0.170 4.170 26 C 0.068 3.932 27 O -0.320 6.320 28 C -0.135 4.135 29 C -0.104 4.104 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.168 0.832 33 H 0.184 0.816 34 H 0.184 0.816 35 H 0.254 0.746 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.151 0.849 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.266 0.734 42 H 0.108 0.892 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 27.203 -2.455 -0.649 27.322 hybrid contribution -0.831 0.893 -0.189 1.234 sum 26.373 -1.562 -0.838 26.432 Atomic orbital electron populations 1.69680 1.06447 1.29561 1.49515 1.25034 0.95616 1.01407 0.95355 0.85415 0.79089 0.78538 0.79018 1.20199 1.19086 1.18992 1.20897 0.78408 0.96269 1.52264 0.89073 1.83769 1.20756 1.26941 1.79835 1.19774 0.92120 0.85672 0.91599 1.21333 1.00588 0.92981 1.12178 1.21445 0.95931 0.96179 0.92474 1.21237 0.93023 0.99425 1.07080 1.21363 1.00815 0.89323 0.93252 1.19261 0.89989 0.94947 1.19548 1.18383 0.82600 0.88655 0.75524 1.90846 1.72391 1.31206 1.50515 1.45587 1.04993 1.09824 1.75606 1.21442 0.91367 0.87623 0.95408 0.90666 1.21443 0.92645 1.01078 0.98014 1.20469 0.95788 0.97813 0.94697 1.20942 0.95064 0.98356 1.00178 1.21248 0.95019 0.99210 0.96291 1.21584 1.01326 0.98908 0.95142 1.18155 0.90445 0.96896 0.87660 1.84759 1.77384 1.52817 1.17021 1.20832 0.94754 1.01086 0.96853 1.21071 0.89501 1.00628 0.99226 0.90455 0.86770 0.83209 0.81595 0.81588 0.74630 0.88955 0.91909 0.84897 0.82731 0.83264 0.73385 0.89183 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.00 13.96 21.62 0.30 -55.70 16 2 C 0.03 1.59 5.49 84.85 0.47 2.05 16 3 Si 0.96 50.97 28.62 68.60 1.96 52.93 16 4 H -0.28 -14.54 7.11 99.48 0.71 -13.83 16 5 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -15.19 7.11 99.48 0.71 -14.48 16 7 C -0.40 -24.61 9.95 67.93 0.68 -23.93 16 8 H 0.09 5.64 5.44 -2.91 -0.02 5.62 16 9 O -0.21 -12.14 6.67 0.75 0.01 -12.13 16 10 C 0.16 7.76 6.66 22.91 0.15 7.92 16 11 C -0.25 -10.65 9.16 22.36 0.20 -10.44 16 12 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 13 C -0.19 -4.56 10.02 22.25 0.22 -4.34 16 14 C -0.03 -0.76 9.54 22.52 0.21 -0.55 16 15 C -0.23 -8.97 5.89 -19.99 -0.12 -9.09 16 16 C 0.56 21.86 7.76 86.70 0.67 22.53 16 17 O -0.57 -28.93 14.81 16.91 0.25 -28.68 16 18 N -0.71 -18.71 5.10 -441.33 -2.25 -20.96 16 19 C 0.15 3.74 3.44 45.91 0.16 3.89 16 20 H 0.08 2.37 7.54 -2.38 -0.02 2.35 16 21 C -0.09 -2.30 6.50 30.52 0.20 -2.10 16 22 C -0.09 -1.88 6.14 -19.60 -0.12 -2.00 16 23 C -0.13 -2.34 10.04 22.32 0.22 -2.12 16 24 C -0.10 -1.47 10.04 22.23 0.22 -1.25 16 25 C -0.15 -2.30 9.98 22.34 0.22 -2.07 16 26 C 0.11 2.02 6.70 22.54 0.15 2.17 16 27 O -0.51 -7.67 13.45 -92.46 -1.24 -8.91 16 28 C -0.13 -2.69 6.11 -19.50 -0.12 -2.81 16 29 C -0.07 -1.24 6.42 30.52 0.20 -1.05 16 30 H 0.29 16.15 8.31 -92.71 -0.77 15.38 16 31 H 0.11 5.31 5.64 -2.91 -0.02 5.30 16 32 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.17 2.59 6.40 -2.91 -0.02 2.58 16 35 H 0.41 7.49 6.46 -92.71 -0.60 6.89 16 36 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.41 2.61 9.06 -74.06 -0.67 1.94 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 1.57 7.81 -2.39 -0.02 1.55 16 Total: -1.00 -83.10 365.11 2.69 -80.41 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.18 Total: 17.27 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 3.85 Total: -24.23 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -1.95 Total: -76.66 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -0.99 Total: -49.72 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 1.96 Total: 52.93 kcal Total: -83.10 2.69 -80.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760608820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.014 kcal (2) G-P(sol) polarization free energy of solvation -83.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds