Wall clock time and date at job start Tue Mar 31 2020 22:07:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 N 1.46500 * 109.47034 * 2 1
4 4 C 1.46507 * 120.00147 * 270.00028 * 3 2 1
5 5 C 1.50694 * 109.46930 * 270.00156 * 4 3 2
6 6 H 1.08003 * 120.00351 * 359.97438 * 5 4 3
7 7 C 1.37882 * 119.99841 * 180.02562 * 5 4 3
8 8 N 1.31509 * 119.99777 * 359.97438 * 7 5 4
9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 4
10 10 H 1.48506 * 109.47276 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47445 * 119.99508 * 9 7 5
12 12 H 1.48494 * 109.47126 * 240.00048 * 9 7 5
13 13 C 1.34771 * 119.99867 * 89.99895 * 3 2 1
14 14 O 1.21285 * 119.99959 * 180.02562 * 13 3 2
15 15 C 1.50695 * 120.00260 * 0.02562 * 13 3 2
16 16 O 1.45205 * 109.47702 * 180.02562 * 15 13 3
17 17 C 1.34638 * 117.00324 * 180.02562 * 16 15 13
18 18 O 1.21393 * 119.99875 * 359.97438 * 17 16 15
19 19 C 1.48374 * 120.00025 * 180.27072 * 17 16 15
20 20 C 1.39176 * 120.49076 * 179.44556 * 19 17 16
21 21 C 1.39626 * 118.32466 * 179.73804 * 20 19 17
22 22 O 1.35509 * 120.45516 * 180.25916 * 21 20 19
23 23 N 1.32608 * 119.09109 * 0.53798 * 21 20 19
24 24 C 1.32378 * 120.88982 * 359.72226 * 23 21 20
25 25 O 1.35467 * 119.07273 * 180.02562 * 24 23 21
26 26 C 1.42893 * 117.00124 * 359.97438 * 25 24 23
27 27 N 1.32080 * 121.84789 * 0.02562 * 24 23 21
28 28 H 1.08996 * 109.47077 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.46842 * 299.99969 * 1 2 3
30 30 H 1.09000 * 109.47195 * 59.99778 * 1 2 3
31 31 H 1.08999 * 109.46842 * 240.00031 * 2 1 3
32 32 H 1.08996 * 109.46757 * 120.00066 * 2 1 3
33 33 H 1.09003 * 109.46719 * 30.00301 * 4 3 2
34 34 H 1.08999 * 109.46859 * 150.00021 * 4 3 2
35 35 H 0.96997 * 120.00169 * 180.02562 * 8 7 5
36 36 H 1.08997 * 109.47553 * 59.99845 * 15 13 3
37 37 H 1.09010 * 109.47374 * 299.99590 * 15 13 3
38 38 H 1.08000 * 120.83850 * 359.97438 * 20 19 17
39 39 H 0.96698 * 114.00258 * 270.27810 * 22 21 20
40 40 H 1.08996 * 109.47514 * 60.00166 * 26 25 24
41 41 H 1.09004 * 109.47397 * 180.02562 * 26 25 24
42 42 H 1.09009 * 109.47412 * 300.00360 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2626 2.0719 -1.2688
5 6 3.6858 1.8351 -1.7038
6 1 4.3429 1.2309 -1.0958
7 6 4.1494 2.3906 -2.8775
8 7 3.3494 3.1267 -3.6175
9 14 5.9138 2.0977 -3.4164
10 1 6.6015 1.2424 -2.4159
11 1 5.9218 1.4191 -4.7372
12 1 6.6210 3.3990 -3.5240
13 6 2.2430 2.0165 1.1672
14 8 2.6468 3.1602 1.1672
15 6 1.9924 1.3060 2.4722
16 8 2.3061 2.1958 3.5760
17 6 2.1355 1.7103 4.8201
18 8 1.7352 0.5753 4.9791
19 6 2.4303 2.5646 5.9968
20 6 2.2466 2.0770 7.2873
21 6 2.5434 2.9179 8.3618
22 8 2.3853 2.4856 9.6363
23 7 2.9768 4.1471 8.1178
24 6 3.1344 4.5783 6.8762
25 8 3.5799 5.8408 6.6694
26 6 3.8521 6.6308 7.8285
27 7 2.8694 3.8122 5.8335
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 1.8934 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 1.5817 1.6878 -2.0284
34 1 2.0956 3.1411 -1.1384
35 1 3.6754 3.5172 -4.4434
36 1 2.6229 0.4187 2.5299
37 1 0.9444 1.0114 2.5303
38 1 1.8871 1.0722 7.4536
39 1 1.5061 2.6532 10.0023
40 1 4.6210 6.1435 8.4280
41 1 4.2004 7.6173 7.5224
42 1 2.9420 6.7345 8.4196
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000770515835.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:31
Heat of formation + Delta-G solvation = -118.368526 kcal
Electronic energy + Delta-G solvation = -28789.917543 eV
Core-core repulsion = 24352.041818 eV
Total energy + Delta-G solvation = -4437.875725 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.135 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.98102 -40.58405 -39.17788 -38.94606 -37.77757 -36.61368 -35.30161 -33.90935
-32.82943 -31.71875 -30.18414 -29.35867 -27.94549 -26.86129 -25.71844 -24.37955
-23.08527 -22.71110 -21.81000 -19.87409 -19.28581 -18.69099 -18.10107 -17.41639
-16.97268 -16.85656 -16.67492 -16.36988 -16.17174 -15.82756 -15.52196 -15.33324
-14.92085 -14.68986 -14.28307 -13.94633 -13.51312 -13.36775 -12.98940 -12.86746
-12.64644 -12.36935 -12.16504 -12.05975 -11.68258 -11.64417 -11.43182 -11.25855
-11.23132 -11.21713 -10.95942 -10.87944 -10.65243 -10.54528 -10.13398 -9.92051
-9.63028 -9.55146 -8.99186 -8.43616 -7.74361 -6.04540 -4.09155 -0.16638
0.33362 1.79130 2.00843 2.22037 2.68678 3.18876 3.25849 3.31123
3.39228 3.43294 3.62068 3.85826 4.12259 4.28953 4.45607 4.56121
4.76577 4.82546 4.89115 4.91417 5.06391 5.15322 5.17529 5.30295
5.31654 5.34428 5.57720 5.72104 5.94219 5.99947 6.07908 6.19009
6.44144 6.53495 6.70825 6.98893 7.26909 7.41280 7.48485 7.53705
7.91724 8.21673 8.29894 8.86012 9.00674 9.55932 11.03729
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.013586 B = 0.002541 C = 0.002260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2060.410563 B =11017.085324 C =12383.885142
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.101 3.899
3 N -0.592 5.592
4 C 0.248 3.752
5 C -0.527 4.527
6 H 0.059 0.941
7 C 0.061 3.939
8 N -0.894 5.894
9 Si 0.899 3.101
10 H -0.273 1.273
11 H -0.284 1.284
12 H -0.282 1.282
13 C 0.506 3.494
14 O -0.511 6.511
15 C 0.046 3.954
16 O -0.296 6.296
17 C 0.525 3.475
18 O -0.485 6.485
19 C 0.208 3.792
20 C -0.219 4.219
21 C 0.404 3.596
22 O -0.467 6.467
23 N -0.571 5.571
24 C 0.527 3.473
25 O -0.276 6.276
26 C 0.042 3.958
27 N -0.474 5.474
28 H 0.062 0.938
29 H 0.050 0.950
30 H 0.063 0.937
31 H 0.088 0.912
32 H 0.064 0.936
33 H 0.036 0.964
34 H 0.046 0.954
35 H 0.263 0.737
36 H 0.100 0.900
37 H 0.099 0.901
38 H 0.174 0.826
39 H 0.414 0.586
40 H 0.065 0.935
41 H 0.109 0.891
42 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.449 -2.638 25.343 26.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.023 4.023
3 N -0.326 5.326
4 C 0.129 3.871
5 C -0.566 4.566
6 H 0.077 0.923
7 C -0.141 4.141
8 N -0.533 5.533
9 Si 0.726 3.274
10 H -0.198 1.198
11 H -0.210 1.210
12 H -0.208 1.208
13 C 0.290 3.710
14 O -0.386 6.386
15 C -0.032 4.032
16 O -0.208 6.208
17 C 0.366 3.634
18 O -0.371 6.371
19 C 0.061 3.939
20 C -0.244 4.244
21 C 0.214 3.786
22 O -0.275 6.275
23 N -0.312 5.312
24 C 0.225 3.775
25 O -0.177 6.177
26 C -0.053 4.053
27 N -0.203 5.203
28 H 0.081 0.919
29 H 0.069 0.931
30 H 0.082 0.918
31 H 0.106 0.894
32 H 0.082 0.918
33 H 0.054 0.946
34 H 0.064 0.936
35 H 0.073 0.927
36 H 0.118 0.882
37 H 0.117 0.883
38 H 0.191 0.809
39 H 0.274 0.726
40 H 0.084 0.916
41 H 0.127 0.873
42 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -5.405 -1.331 24.734 25.352
hybrid contribution 0.229 -0.957 0.149 0.996
sum -5.176 -2.288 24.882 25.518
Atomic orbital electron populations
1.22239 0.96545 1.01675 1.02442 1.21513 0.93739 0.83977 1.03048
1.48206 1.63968 1.13394 1.07058 1.19343 0.96493 0.93756 0.77488
1.21465 0.96841 1.31994 1.06310 0.92325 1.24931 0.97906 0.94859
0.96384 1.69935 1.35631 1.33401 1.14343 0.86431 0.84578 0.78094
0.78254 1.19784 1.20986 1.20843 1.19619 0.80010 0.87229 0.84151
1.90758 1.43991 1.17297 1.86550 1.23168 1.03022 0.92665 0.84302
1.86751 1.77072 1.43850 1.13176 1.20442 0.75003 0.84559 0.83408
1.90875 1.41641 1.17942 1.86680 1.20049 0.93548 0.89054 0.91199
1.22750 1.05929 1.04663 0.91026 1.18816 0.88627 0.85677 0.85431
1.84746 1.39440 1.79613 1.23683 1.67467 1.20918 1.18530 1.24312
1.20222 0.88083 0.86905 0.82311 1.86233 1.77902 1.18469 1.35051
1.23099 1.01874 0.94020 0.86337 1.67675 1.14985 1.04531 1.33123
0.91899 0.93133 0.91767 0.89383 0.91761 0.94596 0.93645 0.92733
0.88175 0.88280 0.80852 0.72552 0.91615 0.87285 0.91683
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16
2 C 0.10 1.56 5.93 -4.04 -0.02 1.54 16
3 N -0.59 -12.36 2.46 -175.06 -0.43 -12.79 16
4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16
5 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16
6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16
7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16
8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16
9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16
10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
13 C 0.51 10.76 7.75 -10.99 -0.09 10.67 16
14 O -0.51 -13.45 16.08 -14.11 -0.23 -13.67 16
15 C 0.05 0.73 4.50 36.00 0.16 0.89 16
16 O -0.30 -5.14 9.61 -47.00 -0.45 -5.59 16
17 C 0.53 7.58 7.97 34.90 0.28 7.86 16
18 O -0.48 -6.83 16.20 -19.18 -0.31 -7.14 16
19 C 0.21 2.69 6.78 -82.72 -0.56 2.13 16
20 C -0.22 -2.07 9.67 -38.72 -0.37 -2.45 16
21 C 0.40 3.59 7.83 -16.70 -0.13 3.46 16
22 O -0.47 -2.78 13.57 -18.22 -0.25 -3.02 16
23 N -0.57 -6.12 9.22 -14.80 -0.14 -6.25 16
24 C 0.53 6.85 8.48 -91.41 -0.78 6.07 16
25 O -0.28 -3.40 10.55 -18.09 -0.19 -3.59 16
26 C 0.04 0.31 10.36 101.05 1.05 1.36 16
27 N -0.47 -7.10 10.27 -11.36 -0.12 -7.22 16
28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16
30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
31 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16
32 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16
33 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16
34 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16
35 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16
36 H 0.10 1.40 7.40 -51.93 -0.38 1.01 16
37 H 0.10 1.32 7.18 -51.92 -0.37 0.94 16
38 H 0.17 1.27 7.72 -52.49 -0.41 0.86 16
39 H 0.41 0.16 9.06 45.56 0.41 0.57 16
40 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16
41 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16
42 H 0.06 0.41 8.09 -51.92 -0.42 -0.01 16
LS Contribution 376.95 15.07 5.68 5.68
Total: -1.00 -37.72 376.95 -5.58 -43.31
By element:
Atomic # 1 Polarization: 0.94 SS G_CDS: -4.34 Total: -3.39 kcal
Atomic # 6 Polarization: 23.07 SS G_CDS: -0.53 Total: 22.54 kcal
Atomic # 7 Polarization: -52.11 SS G_CDS: 0.05 Total: -52.06 kcal
Atomic # 8 Polarization: -31.59 SS G_CDS: -1.43 Total: -33.02 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -37.72 -5.58 -43.31 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000770515835.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.063 kcal
(2) G-P(sol) polarization free energy of solvation -37.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.787 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.369 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds