Wall clock time and date at job start Tue Mar 31 2020 22:07:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 N 1.46500 * 109.47034 * 2 1
4 4 C 1.46507 * 120.00147 * 270.00028 * 3 2 1
5 5 C 1.50694 * 109.46930 * 270.00156 * 4 3 2
6 6 H 1.08003 * 120.00351 * 359.97438 * 5 4 3
7 7 C 1.37882 * 119.99841 * 180.02562 * 5 4 3
8 8 N 1.31509 * 119.99777 * 359.97438 * 7 5 4
9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 4
10 10 H 1.48506 * 109.47276 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47445 * 119.99508 * 9 7 5
12 12 H 1.48494 * 109.47126 * 240.00048 * 9 7 5
13 13 C 1.34771 * 119.99867 * 89.99895 * 3 2 1
14 14 O 1.21285 * 119.99959 * 180.02562 * 13 3 2
15 15 C 1.50695 * 120.00260 * 0.02562 * 13 3 2
16 16 O 1.45205 * 109.47702 * 180.02562 * 15 13 3
17 17 C 1.34638 * 117.00324 * 180.02562 * 16 15 13
18 18 O 1.21393 * 119.99875 * 359.97438 * 17 16 15
19 19 C 1.48374 * 120.00025 * 180.27072 * 17 16 15
20 20 C 1.39176 * 120.49076 * 179.44556 * 19 17 16
21 21 C 1.39626 * 118.32466 * 179.73804 * 20 19 17
22 22 O 1.35509 * 120.45516 * 180.25916 * 21 20 19
23 23 N 1.32608 * 119.09109 * 0.53798 * 21 20 19
24 24 C 1.32378 * 120.88982 * 359.72226 * 23 21 20
25 25 O 1.35467 * 119.07273 * 180.02562 * 24 23 21
26 26 C 1.42893 * 117.00124 * 359.97438 * 25 24 23
27 27 N 1.32080 * 121.84789 * 0.02562 * 24 23 21
28 28 H 1.08996 * 109.47077 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.46842 * 299.99969 * 1 2 3
30 30 H 1.09000 * 109.47195 * 59.99778 * 1 2 3
31 31 H 1.08999 * 109.46842 * 240.00031 * 2 1 3
32 32 H 1.08996 * 109.46757 * 120.00066 * 2 1 3
33 33 H 1.09003 * 109.46719 * 30.00301 * 4 3 2
34 34 H 1.08999 * 109.46859 * 150.00021 * 4 3 2
35 35 H 0.96997 * 120.00169 * 180.02562 * 8 7 5
36 36 H 1.08997 * 109.47553 * 59.99845 * 15 13 3
37 37 H 1.09010 * 109.47374 * 299.99590 * 15 13 3
38 38 H 1.08000 * 120.83850 * 359.97438 * 20 19 17
39 39 H 0.96698 * 114.00258 * 270.27810 * 22 21 20
40 40 H 1.08996 * 109.47514 * 60.00166 * 26 25 24
41 41 H 1.09004 * 109.47397 * 180.02562 * 26 25 24
42 42 H 1.09009 * 109.47412 * 300.00360 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2626 2.0719 -1.2688
5 6 3.6858 1.8351 -1.7038
6 1 4.3429 1.2309 -1.0958
7 6 4.1494 2.3906 -2.8775
8 7 3.3494 3.1267 -3.6175
9 14 5.9138 2.0977 -3.4164
10 1 6.6015 1.2424 -2.4159
11 1 5.9218 1.4191 -4.7372
12 1 6.6210 3.3990 -3.5240
13 6 2.2430 2.0165 1.1672
14 8 2.6468 3.1602 1.1672
15 6 1.9924 1.3060 2.4722
16 8 2.3061 2.1958 3.5760
17 6 2.1355 1.7103 4.8201
18 8 1.7352 0.5753 4.9791
19 6 2.4303 2.5646 5.9968
20 6 2.2466 2.0770 7.2873
21 6 2.5434 2.9179 8.3618
22 8 2.3853 2.4856 9.6363
23 7 2.9768 4.1471 8.1178
24 6 3.1344 4.5783 6.8762
25 8 3.5799 5.8408 6.6694
26 6 3.8521 6.6308 7.8285
27 7 2.8694 3.8122 5.8335
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 1.8934 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 1.5817 1.6878 -2.0284
34 1 2.0956 3.1411 -1.1384
35 1 3.6754 3.5172 -4.4434
36 1 2.6229 0.4187 2.5299
37 1 0.9444 1.0114 2.5303
38 1 1.8871 1.0722 7.4536
39 1 1.5061 2.6532 10.0023
40 1 4.6210 6.1435 8.4280
41 1 4.2004 7.6173 7.5224
42 1 2.9420 6.7345 8.4196
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000770515835.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:31
Heat of formation + Delta-G solvation = -151.148238 kcal
Electronic energy + Delta-G solvation = -28791.338978 eV
Core-core repulsion = 24352.041818 eV
Total energy + Delta-G solvation = -4439.297160 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.135 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.83346 -41.73820 -40.57727 -39.85417 -38.49277 -37.81684 -36.98082 -34.94027
-34.72006 -32.53163 -31.73629 -30.76411 -28.76594 -28.42062 -26.82931 -25.21082
-24.82376 -24.12428 -22.85697 -20.73725 -20.23942 -20.14812 -18.93423 -18.67870
-18.31725 -18.11476 -17.99805 -17.62998 -17.32735 -17.04989 -16.69752 -16.29776
-16.18657 -15.98915 -15.63705 -14.94305 -14.85494 -14.63730 -14.47877 -13.94721
-13.92764 -13.59274 -13.45240 -13.27484 -13.06139 -12.99297 -12.69178 -12.50393
-12.37717 -12.33323 -12.23433 -12.14026 -12.08225 -12.06212 -11.80854 -11.68989
-10.80821 -10.70185 -10.64772 -10.34307 -9.53176 -8.23054 -6.37187 -1.05244
-0.42121 0.81765 0.99683 1.31703 1.36468 1.39618 1.50799 1.63320
1.99541 2.22381 2.33330 2.40697 3.01282 3.07135 3.08628 3.41274
3.49836 3.82129 3.92692 3.96148 4.02034 4.17495 4.35691 4.36020
4.40792 4.57556 4.62136 4.71224 4.82522 4.96143 4.97580 5.05127
5.20964 5.24276 5.39541 5.55388 5.78219 5.80651 6.04841 6.18715
6.40599 6.61967 6.67614 6.72568 7.22858 7.37705 8.84684
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.013586 B = 0.002541 C = 0.002260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2060.410563 B =11017.085324 C =12383.885142
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.093 3.907
3 N -0.595 5.595
4 C 0.262 3.738
5 C -0.543 4.543
6 H 0.054 0.946
7 C 0.008 3.992
8 N -0.928 5.928
9 Si 0.968 3.032
10 H -0.267 1.267
11 H -0.267 1.267
12 H -0.283 1.283
13 C 0.497 3.503
14 O -0.577 6.577
15 C 0.058 3.942
16 O -0.327 6.327
17 C 0.529 3.471
18 O -0.481 6.481
19 C 0.186 3.814
20 C -0.196 4.196
21 C 0.419 3.581
22 O -0.461 6.461
23 N -0.567 5.567
24 C 0.518 3.482
25 O -0.303 6.303
26 C 0.037 3.963
27 N -0.523 5.523
28 H 0.099 0.901
29 H 0.059 0.941
30 H 0.042 0.958
31 H 0.081 0.919
32 H 0.102 0.898
33 H 0.031 0.969
34 H -0.002 1.002
35 H 0.267 0.733
36 H 0.128 0.872
37 H 0.133 0.867
38 H 0.200 0.800
39 H 0.440 0.560
40 H 0.069 0.931
41 H 0.130 0.870
42 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.547 -5.034 27.824 29.023
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.029 4.029
3 N -0.327 5.327
4 C 0.141 3.859
5 C -0.582 4.582
6 H 0.073 0.927
7 C -0.191 4.191
8 N -0.567 5.567
9 Si 0.792 3.208
10 H -0.191 1.191
11 H -0.192 1.192
12 H -0.209 1.209
13 C 0.284 3.716
14 O -0.457 6.457
15 C -0.018 4.018
16 O -0.241 6.241
17 C 0.371 3.629
18 O -0.367 6.367
19 C 0.042 3.958
20 C -0.221 4.221
21 C 0.229 3.771
22 O -0.273 6.273
23 N -0.310 5.310
24 C 0.215 3.785
25 O -0.204 6.204
26 C -0.057 4.057
27 N -0.253 5.253
28 H 0.118 0.882
29 H 0.078 0.922
30 H 0.061 0.939
31 H 0.100 0.900
32 H 0.120 0.880
33 H 0.049 0.951
34 H 0.016 0.984
35 H 0.076 0.924
36 H 0.146 0.854
37 H 0.151 0.849
38 H 0.217 0.783
39 H 0.306 0.694
40 H 0.087 0.913
41 H 0.148 0.852
42 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -5.560 -3.796 27.251 28.071
hybrid contribution 0.199 -0.219 -0.471 0.557
sum -5.361 -4.016 26.780 27.605
Atomic orbital electron populations
1.22185 0.94262 1.03844 1.01871 1.21900 0.95606 0.80816 1.04577
1.48204 1.63655 1.15345 1.05519 1.18792 0.95599 0.91641 0.79824
1.21737 0.97828 1.32060 1.06534 0.92734 1.25847 1.02365 0.94452
0.96464 1.70049 1.37691 1.34168 1.14838 0.85368 0.79030 0.77962
0.78445 1.19130 1.19247 1.20944 1.20545 0.78484 0.86679 0.85904
1.90720 1.46941 1.20293 1.87696 1.23062 1.05540 0.91893 0.81334
1.86737 1.77885 1.45031 1.14464 1.20627 0.74680 0.84850 0.82779
1.90855 1.41663 1.17685 1.86535 1.20020 0.95208 0.88798 0.91765
1.22961 1.04096 1.05476 0.89525 1.18925 0.86941 0.84809 0.86454
1.84726 1.41629 1.79138 1.21821 1.67562 1.21004 1.19335 1.23057
1.20245 0.88544 0.87087 0.82590 1.86200 1.77964 1.18723 1.37493
1.23381 1.02507 0.94312 0.85487 1.67510 1.17015 1.05905 1.34907
0.88249 0.92226 0.93891 0.90037 0.88037 0.95095 0.98402 0.92374
0.85425 0.84906 0.78262 0.69394 0.91272 0.85184 0.90708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.84 10.24 71.98 0.74 -3.11 16
2 C 0.09 2.71 5.93 86.38 0.51 3.22 16
3 N -0.59 -25.25 2.46 -826.15 -2.03 -27.28 16
4 C 0.26 14.24 5.16 85.63 0.44 14.68 16
5 C -0.54 -31.59 9.39 25.60 0.24 -31.35 16
6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16
7 C 0.01 0.45 5.46 84.66 0.46 0.91 16
8 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16
9 Si 0.97 45.57 29.54 68.60 2.03 47.59 16
10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16
13 C 0.50 21.61 7.75 87.66 0.68 22.29 16
14 O -0.58 -32.15 16.08 15.75 0.25 -31.90 16
15 C 0.06 1.78 4.50 71.23 0.32 2.10 16
16 O -0.33 -11.37 9.61 -49.08 -0.47 -11.84 16
17 C 0.53 14.72 7.97 70.52 0.56 15.28 16
18 O -0.48 -12.32 16.20 20.18 0.33 -12.00 16
19 C 0.19 4.70 6.78 41.85 0.28 4.98 16
20 C -0.20 -3.24 9.67 22.83 0.22 -3.02 16
21 C 0.42 6.38 7.83 84.91 0.67 7.05 16
22 O -0.46 -3.77 13.57 -88.11 -1.20 -4.96 16
23 N -0.57 -11.40 9.22 -426.43 -3.93 -15.33 16
24 C 0.52 13.53 8.48 180.62 1.53 15.06 16
25 O -0.30 -7.64 10.55 -87.66 -0.93 -8.57 16
26 C 0.04 0.53 10.36 113.37 1.17 1.70 16
27 N -0.52 -16.02 10.27 -302.93 -3.11 -19.13 16
28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16
29 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16
30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
31 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16
32 H 0.10 2.23 6.44 -2.39 -0.02 2.21 16
33 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16
34 H 0.00 -0.14 7.42 -2.39 -0.02 -0.15 16
35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16
36 H 0.13 3.21 7.40 -2.39 -0.02 3.19 16
37 H 0.13 3.15 7.18 -2.38 -0.02 3.14 16
38 H 0.20 2.16 7.72 -2.91 -0.02 2.13 16
39 H 0.44 -1.48 9.06 -74.06 -0.67 -2.15 16
40 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16
41 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16
42 H 0.07 0.89 8.09 -2.38 -0.02 0.87 16
Total: -1.00 -87.53 376.95 -0.53 -88.06
By element:
Atomic # 1 Polarization: 1.47 SS G_CDS: 0.41 Total: 1.88 kcal
Atomic # 6 Polarization: 41.99 SS G_CDS: 7.83 Total: 49.82 kcal
Atomic # 7 Polarization: -109.30 SS G_CDS: -8.79 Total: -118.09 kcal
Atomic # 8 Polarization: -67.26 SS G_CDS: -2.01 Total: -69.27 kcal
Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal
Total: -87.53 -0.53 -88.06 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000770515835.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.088 kcal
(2) G-P(sol) polarization free energy of solvation -87.531 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.618 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.060 kcal
(6) G-S(sol) free energy of system = (1) + (5) -151.148 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds