Wall clock time and date at job start Tue Mar 31 2020 22:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35468 * 117.00224 * 2 1 4 4 N 1.32403 * 119.07338 * 359.97438 * 3 2 1 5 5 C 1.32576 * 120.89139 * 180.02562 * 4 3 2 6 6 O 1.35502 * 120.45866 * 179.97438 * 5 4 3 7 7 C 1.39668 * 119.08837 * 359.74559 * 5 4 3 8 8 C 1.39145 * 118.32216 * 0.51307 * 7 5 4 9 9 C 1.48371 * 120.48963 * 179.76349 * 8 7 5 10 10 O 1.21393 * 119.99695 * 359.72179 * 9 8 7 11 11 O 1.34647 * 120.00182 * 179.71937 * 9 8 7 12 12 C 1.45194 * 116.99921 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47239 * 330.00027 * 12 11 9 14 14 C 1.52997 * 109.47339 * 90.00270 * 12 11 9 15 15 C 1.50708 * 109.47032 * 210.00370 * 12 11 9 16 16 O 1.21280 * 119.99888 * 354.99873 * 15 12 11 17 17 N 1.34777 * 119.99928 * 174.99982 * 15 12 11 18 18 C 1.46496 * 119.99889 * 359.97438 * 17 15 12 19 19 C 1.46500 * 119.99779 * 179.97438 * 17 15 12 20 20 C 1.50694 * 109.46954 * 89.99836 * 19 17 15 21 21 H 1.08003 * 120.00102 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99994 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00205 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00154 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46987 * 90.00313 * 24 22 20 26 26 H 1.48498 * 109.47209 * 210.00317 * 24 22 20 27 27 H 1.48500 * 109.47126 * 330.00657 * 24 22 20 28 28 N 1.32048 * 119.07874 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46921 * 60.00064 * 1 2 3 30 30 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47539 * 300.00558 * 1 2 3 32 32 H 0.96701 * 114.00315 * 89.99609 * 6 5 4 33 33 H 1.07999 * 120.84312 * 180.28059 * 7 5 4 34 34 H 1.09002 * 109.47153 * 59.99705 * 14 12 11 35 35 H 1.09001 * 109.46832 * 299.99896 * 14 12 11 36 36 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 37 37 H 1.09003 * 109.47373 * 90.00178 * 18 17 15 38 38 H 1.09005 * 109.46584 * 209.99714 * 18 17 15 39 39 H 1.08999 * 109.47384 * 329.99408 * 18 17 15 40 40 H 1.08993 * 109.47001 * 209.99914 * 19 17 15 41 41 H 1.09002 * 109.47216 * 330.00108 * 19 17 15 42 42 H 0.97004 * 120.00789 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3051 2.3057 -0.0005 5 6 1.8693 3.5054 -0.0010 6 8 1.1046 4.6240 -0.0021 7 6 3.2627 3.6005 0.0044 8 6 4.0047 2.4234 -0.0008 9 6 5.4878 2.4684 -0.0007 10 8 6.0625 3.5377 -0.0012 11 8 6.1961 1.3233 -0.0001 12 6 7.6431 1.4433 0.0006 13 1 7.9319 2.3602 -0.5134 14 6 8.1507 1.4858 1.4433 15 6 8.2457 0.2584 -0.7094 16 8 7.5339 -0.6466 -1.0904 17 7 9.5757 0.2044 -0.9207 18 6 10.4355 1.2978 -0.4608 19 6 10.1616 -0.9478 -1.6103 20 6 10.1910 -0.6836 -3.0936 21 1 9.8117 0.2493 -3.4837 22 6 10.7032 -1.6326 -3.9528 23 7 11.1656 -2.7684 -3.4779 24 14 10.7404 -1.3049 -5.7915 25 1 12.0223 -0.6471 -6.1512 26 1 10.6204 -2.5900 -6.5259 27 1 9.6082 -0.4171 -6.1591 28 7 3.3637 1.2549 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.8821 4.9493 0.8810 33 1 3.7520 4.5633 0.0086 34 1 7.8619 0.5690 1.9572 35 1 7.7148 2.3429 1.9567 36 1 9.2371 1.5754 1.4437 37 1 10.7727 1.0922 0.5551 38 1 11.2993 1.3825 -1.1202 39 1 9.8742 2.2320 -0.4754 40 1 11.1774 -1.1090 -1.2497 41 1 9.5602 -1.8348 -1.4111 42 1 11.5256 -3.4363 -4.0824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770519859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:05 Heat of formation + Delta-G solvation = -147.096884 kcal Electronic energy + Delta-G solvation = -29149.499640 eV Core-core repulsion = 24710.378160 eV Total energy + Delta-G solvation = -4439.121480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85749 -41.89556 -40.58245 -39.86126 -38.51161 -37.85249 -36.71292 -34.95503 -34.71923 -33.02549 -32.50223 -29.63007 -28.63171 -27.70237 -27.25409 -25.93486 -25.22315 -24.27416 -22.69875 -20.72972 -20.47977 -20.14915 -18.94862 -18.71762 -18.37525 -18.20040 -17.81300 -17.35311 -17.27472 -17.04571 -16.69165 -16.42941 -16.21597 -15.90162 -15.64149 -14.98780 -14.84884 -14.60131 -14.33475 -14.14004 -13.71456 -13.52115 -13.46529 -13.32937 -13.06769 -13.00114 -12.83524 -12.63514 -12.52241 -12.38121 -12.32015 -12.22161 -12.15604 -12.07093 -12.02254 -11.72716 -10.79938 -10.65220 -10.62868 -10.35652 -9.51858 -8.24409 -6.38881 -1.06774 -0.43304 0.79692 1.00205 1.31229 1.35365 1.38845 1.48707 1.61676 1.97872 2.20842 2.32145 2.39391 2.97124 3.05612 3.06747 3.37847 3.48137 3.67266 3.81060 3.91269 3.96024 4.34218 4.35624 4.36072 4.50074 4.56870 4.61477 4.69033 4.71369 4.85615 4.92872 5.01728 5.11425 5.20123 5.23759 5.50885 5.76795 5.77831 6.02967 6.17884 6.40098 6.59024 6.66234 6.69979 7.20544 7.35607 8.82995 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.002644 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.645342 B =10586.821549 C =11401.842521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.302 6.302 3 C 0.518 3.482 4 N -0.567 5.567 5 C 0.420 3.580 6 O -0.460 6.460 7 C -0.198 4.198 8 C 0.186 3.814 9 C 0.527 3.473 10 O -0.483 6.483 11 O -0.322 6.322 12 C 0.075 3.925 13 H 0.127 0.873 14 C -0.162 4.162 15 C 0.497 3.503 16 O -0.579 6.579 17 N -0.599 5.599 18 C 0.067 3.933 19 C 0.260 3.740 20 C -0.547 4.547 21 H 0.052 0.948 22 C 0.009 3.991 23 N -0.926 5.926 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.280 1.280 27 H -0.276 1.276 28 N -0.522 5.522 29 H 0.067 0.933 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.440 0.560 33 H 0.199 0.801 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.036 0.964 41 H -0.001 1.001 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.261 18.168 13.840 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.203 6.203 3 C 0.215 3.785 4 N -0.309 5.309 5 C 0.230 3.770 6 O -0.273 6.273 7 C -0.222 4.222 8 C 0.042 3.958 9 C 0.368 3.632 10 O -0.369 6.369 11 O -0.236 6.236 12 C 0.017 3.983 13 H 0.144 0.856 14 C -0.219 4.219 15 C 0.284 3.716 16 O -0.458 6.458 17 N -0.331 5.331 18 C -0.075 4.075 19 C 0.139 3.861 20 C -0.585 4.585 21 H 0.070 0.930 22 C -0.190 4.190 23 N -0.566 5.566 24 Si 0.791 3.209 25 H -0.185 1.185 26 H -0.206 1.206 27 H -0.201 1.201 28 N -0.252 5.252 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.094 0.906 32 H 0.306 0.694 33 H 0.216 0.784 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.053 0.947 41 H 0.017 0.983 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.658 16.655 13.034 28.203 hybrid contribution 0.267 0.337 -0.744 0.859 sum -18.392 16.992 12.290 27.893 Atomic orbital electron populations 1.23387 0.72917 1.05875 1.03527 1.86198 1.26001 1.21694 1.86398 1.20248 0.84698 0.84850 0.88657 1.67559 1.42758 0.99366 1.21216 1.18914 0.86438 0.84871 0.86826 1.84731 1.70232 1.35370 1.36945 1.22971 0.93951 1.00983 1.04298 1.20011 0.90944 0.88617 0.96247 1.20710 0.87297 0.82196 0.72994 1.90833 1.70637 1.30141 1.45284 1.86796 1.20792 1.33864 1.82135 1.22780 0.76543 0.98000 1.00935 0.85572 1.22328 1.04606 1.04419 0.90561 1.20643 0.82927 0.87961 0.80052 1.90701 1.61129 1.41076 1.52902 1.48044 1.05856 1.22977 1.56204 1.22233 0.95554 0.88705 1.00960 1.18847 0.92682 0.83522 0.91064 1.21695 1.40945 1.02910 0.92958 0.92969 1.25834 0.94611 0.94496 1.04060 1.70036 1.41675 1.07768 1.37103 0.85429 0.78887 0.77706 0.78868 1.18460 1.20577 1.20128 1.67491 1.09032 1.30097 1.18613 0.91471 0.85083 0.90557 0.69359 0.78382 0.91633 0.88657 0.86831 0.89577 0.90624 0.89096 0.94652 0.98274 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.36 113.37 1.17 1.70 16 2 O -0.30 -7.63 10.56 -87.67 -0.93 -8.56 16 3 C 0.52 13.77 8.48 180.62 1.53 15.30 16 4 N -0.57 -11.72 9.22 -426.43 -3.93 -15.65 16 5 C 0.42 6.75 7.83 84.93 0.67 7.42 16 6 O -0.46 -4.10 13.57 -88.03 -1.19 -5.30 16 7 C -0.20 -3.51 9.67 22.83 0.22 -3.28 16 8 C 0.19 4.92 6.78 41.84 0.28 5.21 16 9 C 0.53 15.60 7.94 70.52 0.56 16.16 16 10 O -0.48 -13.30 15.67 20.18 0.32 -12.99 16 11 O -0.32 -11.63 9.27 -49.19 -0.46 -12.08 16 12 C 0.08 2.45 2.17 29.85 0.06 2.52 16 13 H 0.13 3.62 6.15 -2.39 -0.01 3.60 16 14 C -0.16 -3.76 9.28 71.98 0.67 -3.10 16 15 C 0.50 22.21 7.10 87.66 0.62 22.83 16 16 O -0.58 -32.88 16.09 15.72 0.25 -32.62 16 17 N -0.60 -25.69 2.86 -851.14 -2.43 -28.12 16 18 C 0.07 1.90 8.92 127.77 1.14 3.04 16 19 C 0.26 14.15 5.16 85.63 0.44 14.59 16 20 C -0.55 -32.03 9.39 25.60 0.24 -31.79 16 21 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 22 C 0.01 0.54 5.46 84.66 0.46 1.00 16 23 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 24 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 25 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 N -0.52 -16.33 10.27 -302.96 -3.11 -19.44 16 29 H 0.07 0.92 8.09 -2.38 -0.02 0.90 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 32 H 0.44 -1.31 9.06 -74.06 -0.67 -1.98 16 33 H 0.20 2.42 7.72 -2.91 -0.02 2.40 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 2.10 5.12 -2.38 -0.01 2.08 16 37 H 0.09 1.88 7.02 -2.39 -0.02 1.86 16 38 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 39 H 0.09 2.00 6.08 -2.39 -0.01 1.99 16 40 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 41 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -88.45 371.63 -0.67 -89.12 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 0.42 Total: 2.56 kcal Atomic # 6 Polarization: 43.53 SS G_CDS: 8.07 Total: 51.60 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -9.19 Total: -119.45 kcal Atomic # 8 Polarization: -69.54 SS G_CDS: -2.01 Total: -71.55 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -88.45 -0.67 -89.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770519859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.977 kcal (2) G-P(sol) polarization free energy of solvation -88.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds