Wall clock time and date at job start Tue Mar 31 2020 22:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86798 * 120.00552 * 2 1 4 4 H 1.48494 * 109.47190 * 275.40536 * 3 2 1 5 5 H 1.48504 * 109.46678 * 35.40505 * 3 2 1 6 6 H 1.48496 * 109.47290 * 155.40140 * 3 2 1 7 7 C 1.39948 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00330 * 342.01384 * 7 2 1 9 9 C 1.41397 * 120.00082 * 162.01372 * 7 2 1 10 10 C 1.40737 * 120.24495 * 329.99325 * 9 7 2 11 11 C 1.37601 * 119.74420 * 180.31821 * 10 9 7 12 12 C 1.38650 * 120.24925 * 359.66478 * 11 10 9 13 13 C 1.38614 * 120.50064 * 0.02562 * 12 11 10 14 14 C 1.37632 * 120.25049 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.12924 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.46906 * 265.00072 * 15 14 13 17 17 O 1.20823 * 120.00787 * 0.02562 * 16 15 14 18 18 O 1.34234 * 119.99722 * 179.97438 * 16 15 14 19 19 C 1.45199 * 117.00182 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47032 * 180.02562 * 19 18 16 21 21 C 1.38378 * 119.92670 * 269.72476 * 20 19 18 22 22 C 1.38337 * 120.29158 * 179.72559 * 21 20 19 23 23 C 1.37977 * 120.14322 * 0.55306 * 22 21 20 24 24 C 1.39556 * 119.85373 * 359.72842 * 23 22 21 25 25 C 1.47842 * 120.14503 * 180.02562 * 24 23 22 26 26 N 1.34777 * 120.00297 * 359.97305 * 25 24 23 27 27 O 1.21551 * 120.00072 * 179.97438 * 25 24 23 28 28 C 1.37930 * 119.92903 * 90.00547 * 20 19 18 29 29 H 0.97004 * 119.99666 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.12650 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.86908 * 179.68465 * 11 10 9 32 32 H 1.07998 * 119.74881 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.87219 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.46848 * 25.00512 * 15 14 13 35 35 H 1.09000 * 109.46536 * 145.00060 * 15 14 13 36 36 H 1.08994 * 109.47162 * 300.00089 * 19 18 16 37 37 H 1.09006 * 109.46914 * 60.00256 * 19 18 16 38 38 H 1.07999 * 119.85671 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.93126 * 180.25851 * 22 21 20 40 40 H 1.08010 * 120.07388 * 179.75137 * 23 22 21 41 41 H 0.97004 * 119.99772 * 359.97438 * 26 25 24 42 42 H 0.96996 * 120.00502 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.07539 * 359.97093 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3757 2.1122 -1.3938 5 1 1.5015 2.6169 0.8112 6 1 3.5922 1.4097 0.5828 7 6 2.0078 -1.2120 -0.0005 8 1 1.5074 -2.1246 0.2878 9 6 3.3700 -1.2419 -0.3787 10 6 3.8681 -0.3104 -1.3087 11 6 5.1939 -0.3530 -1.6743 12 6 6.0398 -1.3043 -1.1249 13 6 5.5615 -2.2226 -0.2032 14 6 4.2388 -2.1993 0.1764 15 6 3.7216 -3.1993 1.1782 16 6 3.1185 -4.3732 0.4508 17 8 3.1099 -4.3958 -0.7572 18 8 2.5917 -5.3942 1.1449 19 6 2.0277 -6.4909 0.3785 20 6 1.4874 -7.5362 1.3201 21 6 2.3043 -8.5676 1.7487 22 6 1.8178 -9.5280 2.6175 23 6 0.5100 -9.4693 3.0534 24 6 -0.3208 -8.4350 2.6204 25 6 -1.7230 -8.3655 3.0838 26 7 -2.2017 -9.3026 3.9259 27 8 -2.4442 -7.4632 2.7054 28 6 0.1781 -7.4659 1.7482 29 1 -0.4850 0.8401 0.0004 30 1 3.2111 0.4320 -1.7374 31 1 5.5772 0.3577 -2.3917 32 1 7.0791 -1.3302 -1.4173 33 1 6.2294 -2.9590 0.2186 34 1 4.5439 -3.5439 1.8053 35 1 2.9615 -2.7288 1.8019 36 1 1.2201 -6.1169 -0.2507 37 1 2.8024 -6.9320 -0.2488 38 1 3.3273 -8.6209 1.4066 39 1 2.4617 -10.3282 2.9516 40 1 0.1302 -10.2219 3.7285 41 1 -1.6262 -10.0229 4.2277 42 1 -3.1217 -9.2573 4.2297 43 1 -0.4596 -6.6627 1.4098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777162421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:15 Heat of formation + Delta-G solvation = -84.223579 kcal Electronic energy + Delta-G solvation = -27662.954735 eV Core-core repulsion = 23637.408910 eV Total energy + Delta-G solvation = -4025.545826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.46555 -39.86987 -38.53205 -37.83217 -35.88105 -34.19004 -33.60028 -32.32562 -31.81439 -31.32417 -30.34452 -27.67155 -26.23145 -24.84739 -24.42583 -22.18551 -21.52981 -21.05455 -20.47490 -19.41338 -18.39147 -17.36763 -17.11551 -17.06206 -16.32414 -16.16607 -15.97392 -15.54122 -14.99349 -14.95445 -14.72065 -14.41680 -14.08504 -13.95142 -13.73068 -13.34495 -12.98237 -12.78873 -12.61995 -12.28917 -12.16474 -11.90926 -11.85885 -11.44085 -11.35339 -11.17334 -10.81630 -10.75340 -10.36846 -10.26654 -10.25165 -10.02233 -9.85249 -9.71958 -9.58251 -9.24627 -9.16783 -9.12451 -7.63375 -7.53939 -6.93397 -4.49449 0.53625 0.98287 2.43387 2.59909 2.70801 2.93135 3.12896 3.15020 3.20411 3.31533 3.33372 3.74571 3.99345 4.38902 4.45147 4.51870 4.55338 4.79073 4.97861 5.03688 5.28790 5.33469 5.41315 5.54056 5.65977 5.68928 5.83552 5.95808 5.96989 6.01453 6.06748 6.17368 6.26478 6.29248 6.43958 6.54956 6.56473 6.70554 6.90530 6.95264 6.99911 7.19089 7.42356 7.63862 7.73157 7.88507 7.96634 8.12372 8.34019 8.44967 8.65945 8.80812 10.08439 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.002730 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.122482 B =10253.467600 C =11912.120341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.243 1.243 7 C -0.445 4.445 8 H 0.089 0.911 9 C 0.110 3.890 10 C -0.233 4.233 11 C -0.076 4.076 12 C -0.245 4.245 13 C -0.064 4.064 14 C -0.182 4.182 15 C -0.044 4.044 16 C 0.461 3.539 17 O -0.491 6.491 18 O -0.361 6.361 19 C 0.104 3.896 20 C -0.094 4.094 21 C -0.068 4.068 22 C -0.131 4.131 23 C -0.081 4.081 24 C -0.144 4.144 25 C 0.563 3.437 26 N -0.853 5.853 27 O -0.532 6.532 28 C -0.033 4.033 29 H 0.285 0.715 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.400 0.600 42 H 0.405 0.595 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -18.879 8.697 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.473 4.473 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.252 4.252 11 C -0.095 4.095 12 C -0.264 4.264 13 C -0.082 4.082 14 C -0.183 4.183 15 C -0.081 4.081 16 C 0.303 3.697 17 O -0.376 6.376 18 O -0.280 6.280 19 C 0.031 3.969 20 C -0.094 4.094 21 C -0.087 4.087 22 C -0.149 4.149 23 C -0.100 4.100 24 C -0.147 4.147 25 C 0.349 3.651 26 N -0.417 5.417 27 O -0.409 6.409 28 C -0.052 4.052 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.229 0.771 42 H 0.236 0.764 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.114 -18.171 7.980 19.877 hybrid contribution 0.022 0.248 0.037 0.252 sum 1.136 -17.923 8.017 19.667 Atomic orbital electron populations 1.69707 1.08120 1.30280 1.34608 1.26176 0.94693 1.01758 0.90832 0.86321 0.81343 0.79757 0.78832 1.19709 1.21867 1.16587 1.19445 0.93030 0.95867 1.38949 0.89334 1.17486 0.92581 0.90168 0.89047 1.21008 0.95591 1.04556 1.04018 1.20621 0.93855 0.97114 0.97871 1.20330 0.98273 1.01901 1.05891 1.20446 0.94462 0.96849 0.96426 1.19058 0.93309 1.02016 1.03914 1.20001 1.00875 0.89665 0.97583 1.24373 0.75085 0.82554 0.87661 1.90654 1.53351 1.78068 1.15563 1.86595 1.70238 1.29224 1.41899 1.21677 0.98708 0.84833 0.91724 1.19595 0.93798 0.96127 0.99893 1.21350 0.99549 0.92972 0.94780 1.21071 0.95526 0.99693 0.98622 1.21291 0.93951 0.96597 0.98129 1.19837 0.93886 0.98526 1.02490 1.18285 0.87194 0.81431 0.78202 1.43735 1.17208 1.30222 1.50583 1.90870 1.59258 1.34186 1.56581 1.21296 0.94781 0.96531 0.92547 0.90423 0.88210 0.88899 0.88881 0.88912 0.89081 0.87009 0.90060 0.90367 0.85093 0.85021 0.85571 0.77097 0.76398 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.72 13.93 55.55 0.77 -20.94 16 2 C 0.08 2.24 5.41 -17.34 -0.09 2.15 16 3 Si 0.91 20.93 24.52 -169.99 -4.17 16.76 16 4 H -0.27 -6.10 6.71 56.52 0.38 -5.72 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.24 -5.65 6.85 56.52 0.39 -5.26 16 7 C -0.44 -12.04 8.56 -37.74 -0.32 -12.37 16 8 H 0.09 2.53 6.99 -52.49 -0.37 2.16 16 9 C 0.11 2.82 5.10 -106.82 -0.54 2.28 16 10 C -0.23 -5.77 7.17 -38.87 -0.28 -6.04 16 11 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 12 C -0.24 -5.19 10.05 -39.29 -0.39 -5.58 16 13 C -0.06 -1.35 9.66 -39.66 -0.38 -1.73 16 14 C -0.18 -4.16 4.43 -103.91 -0.46 -4.62 16 15 C -0.04 -0.86 5.30 -29.03 -0.15 -1.01 16 16 C 0.46 9.32 7.55 36.00 0.27 9.59 16 17 O -0.49 -11.50 15.78 -18.75 -0.30 -11.80 16 18 O -0.36 -6.30 10.20 -39.27 -0.40 -6.70 16 19 C 0.10 1.53 5.59 36.01 0.20 1.73 16 20 C -0.09 -1.16 5.51 -104.68 -0.58 -1.74 16 21 C -0.07 -0.66 9.69 -39.49 -0.38 -1.04 16 22 C -0.13 -0.99 10.03 -39.64 -0.40 -1.39 16 23 C -0.08 -0.62 9.54 -39.19 -0.37 -0.99 16 24 C -0.14 -1.58 5.87 -104.97 -0.62 -2.20 16 25 C 0.56 6.53 8.05 -12.33 -0.10 6.43 16 26 N -0.85 -5.58 8.82 30.53 0.27 -5.32 16 27 O -0.53 -8.72 17.18 5.32 0.09 -8.63 16 28 C -0.03 -0.43 9.24 -39.19 -0.36 -0.79 16 29 H 0.29 6.99 8.30 -40.82 -0.34 6.66 16 30 H 0.10 2.47 4.74 -52.48 -0.25 2.22 16 31 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.09 1.44 8.05 -51.93 -0.42 1.03 16 35 H 0.11 2.22 7.15 -51.93 -0.37 1.85 16 36 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 37 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.49 6.41 -52.48 -0.34 0.15 16 41 H 0.40 1.29 6.86 -40.82 -0.28 1.01 16 42 H 0.40 2.19 8.93 -40.82 -0.36 1.82 16 43 H 0.14 2.07 7.65 -52.48 -0.40 1.67 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -34.30 369.40 -8.44 -42.74 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.91 Total: 7.74 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -5.37 Total: -19.42 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 1.04 Total: -26.26 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.61 Total: -27.13 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.17 Total: 16.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.30 -8.44 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.485 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds