Wall clock time and date at job start Tue Mar 31 2020 22:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86798 * 120.00552 * 2 1 4 4 H 1.48494 * 109.47190 * 275.40536 * 3 2 1 5 5 H 1.48504 * 109.46678 * 35.40505 * 3 2 1 6 6 H 1.48496 * 109.47290 * 155.40140 * 3 2 1 7 7 C 1.39948 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00330 * 342.01384 * 7 2 1 9 9 C 1.41397 * 120.00082 * 162.01372 * 7 2 1 10 10 C 1.40737 * 120.24495 * 329.99325 * 9 7 2 11 11 C 1.37601 * 119.74420 * 180.31821 * 10 9 7 12 12 C 1.38650 * 120.24925 * 359.66478 * 11 10 9 13 13 C 1.38614 * 120.50064 * 0.02562 * 12 11 10 14 14 C 1.37632 * 120.25049 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.12924 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.46906 * 265.00072 * 15 14 13 17 17 O 1.20823 * 120.00787 * 0.02562 * 16 15 14 18 18 O 1.34234 * 119.99722 * 179.97438 * 16 15 14 19 19 C 1.45199 * 117.00182 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47032 * 180.02562 * 19 18 16 21 21 C 1.38378 * 119.92670 * 269.72476 * 20 19 18 22 22 C 1.38337 * 120.29158 * 179.72559 * 21 20 19 23 23 C 1.37977 * 120.14322 * 0.55306 * 22 21 20 24 24 C 1.39556 * 119.85373 * 359.72842 * 23 22 21 25 25 C 1.47842 * 120.14503 * 180.02562 * 24 23 22 26 26 N 1.34777 * 120.00297 * 359.97305 * 25 24 23 27 27 O 1.21551 * 120.00072 * 179.97438 * 25 24 23 28 28 C 1.37930 * 119.92903 * 90.00547 * 20 19 18 29 29 H 0.97004 * 119.99666 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.12650 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.86908 * 179.68465 * 11 10 9 32 32 H 1.07998 * 119.74881 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.87219 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.46848 * 25.00512 * 15 14 13 35 35 H 1.09000 * 109.46536 * 145.00060 * 15 14 13 36 36 H 1.08994 * 109.47162 * 300.00089 * 19 18 16 37 37 H 1.09006 * 109.46914 * 60.00256 * 19 18 16 38 38 H 1.07999 * 119.85671 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.93126 * 180.25851 * 22 21 20 40 40 H 1.08010 * 120.07388 * 179.75137 * 23 22 21 41 41 H 0.97004 * 119.99772 * 359.97438 * 26 25 24 42 42 H 0.96996 * 120.00502 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.07539 * 359.97093 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3757 2.1122 -1.3938 5 1 1.5015 2.6169 0.8112 6 1 3.5922 1.4097 0.5828 7 6 2.0078 -1.2120 -0.0005 8 1 1.5074 -2.1246 0.2878 9 6 3.3700 -1.2419 -0.3787 10 6 3.8681 -0.3104 -1.3087 11 6 5.1939 -0.3530 -1.6743 12 6 6.0398 -1.3043 -1.1249 13 6 5.5615 -2.2226 -0.2032 14 6 4.2388 -2.1993 0.1764 15 6 3.7216 -3.1993 1.1782 16 6 3.1185 -4.3732 0.4508 17 8 3.1099 -4.3958 -0.7572 18 8 2.5917 -5.3942 1.1449 19 6 2.0277 -6.4909 0.3785 20 6 1.4874 -7.5362 1.3201 21 6 2.3043 -8.5676 1.7487 22 6 1.8178 -9.5280 2.6175 23 6 0.5100 -9.4693 3.0534 24 6 -0.3208 -8.4350 2.6204 25 6 -1.7230 -8.3655 3.0838 26 7 -2.2017 -9.3026 3.9259 27 8 -2.4442 -7.4632 2.7054 28 6 0.1781 -7.4659 1.7482 29 1 -0.4850 0.8401 0.0004 30 1 3.2111 0.4320 -1.7374 31 1 5.5772 0.3577 -2.3917 32 1 7.0791 -1.3302 -1.4173 33 1 6.2294 -2.9590 0.2186 34 1 4.5439 -3.5439 1.8053 35 1 2.9615 -2.7288 1.8019 36 1 1.2201 -6.1169 -0.2507 37 1 2.8024 -6.9320 -0.2488 38 1 3.3273 -8.6209 1.4066 39 1 2.4617 -10.3282 2.9516 40 1 0.1302 -10.2219 3.7285 41 1 -1.6262 -10.0229 4.2277 42 1 -3.1217 -9.2573 4.2297 43 1 -0.4596 -6.6627 1.4098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777162421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:14 Heat of formation + Delta-G solvation = -107.325353 kcal Electronic energy + Delta-G solvation = -27663.956503 eV Core-core repulsion = 23637.408910 eV Total energy + Delta-G solvation = -4026.547594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63958 -41.12239 -39.74169 -39.30134 -37.40851 -35.52528 -35.05323 -33.76394 -32.99091 -32.20229 -32.10564 -29.22212 -27.52141 -26.64842 -25.26119 -23.38011 -23.02668 -22.59811 -21.37071 -21.11099 -19.29527 -19.17221 -18.65343 -18.01247 -17.69900 -17.43122 -17.11046 -17.00891 -16.26291 -16.08974 -15.92306 -15.71712 -15.61040 -15.47619 -14.79587 -14.63076 -14.42793 -14.12984 -14.03037 -13.79444 -13.76899 -13.32329 -13.13722 -12.85193 -12.73798 -12.71931 -12.53775 -12.21815 -12.01186 -11.75735 -11.56335 -11.49404 -11.41186 -11.26875 -10.99298 -10.81236 -10.02892 -10.02128 -9.42904 -9.35919 -8.89401 -6.50418 -0.26404 0.13084 0.72940 0.88539 1.25584 1.30540 1.38987 1.48735 1.65370 2.00873 2.12029 2.44563 2.62320 2.83191 3.44070 3.57016 3.70412 3.79993 3.95555 4.01437 4.10161 4.14438 4.23659 4.28561 4.41543 4.46658 4.51112 4.53721 4.69696 4.73739 4.88995 4.89957 4.92419 5.13462 5.18489 5.28982 5.33738 5.39552 5.42224 5.64945 5.76803 5.83744 5.84267 5.91711 6.02013 6.25417 6.36972 6.42641 6.75069 6.85194 6.86881 7.23699 8.18911 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.002730 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.122482 B =10253.467600 C =11912.120341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.045 3.955 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.246 1.246 7 C -0.476 4.476 8 H 0.051 0.949 9 C 0.084 3.916 10 C -0.255 4.255 11 C -0.086 4.086 12 C -0.228 4.228 13 C -0.070 4.070 14 C -0.186 4.186 15 C -0.046 4.046 16 C 0.465 3.535 17 O -0.531 6.531 18 O -0.358 6.358 19 C 0.102 3.898 20 C -0.113 4.113 21 C -0.065 4.065 22 C -0.117 4.117 23 C -0.060 4.060 24 C -0.159 4.159 25 C 0.557 3.443 26 N -0.823 5.823 27 O -0.596 6.596 28 C -0.063 4.063 29 H 0.292 0.708 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.420 0.580 42 H 0.413 0.587 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 -21.640 10.334 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.169 4.169 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.169 1.169 7 C -0.505 4.505 8 H 0.069 0.931 9 C 0.082 3.918 10 C -0.274 4.274 11 C -0.104 4.104 12 C -0.247 4.247 13 C -0.088 4.088 14 C -0.188 4.188 15 C -0.083 4.083 16 C 0.310 3.690 17 O -0.420 6.420 18 O -0.276 6.276 19 C 0.029 3.971 20 C -0.113 4.113 21 C -0.083 4.083 22 C -0.135 4.135 23 C -0.078 4.078 24 C -0.162 4.162 25 C 0.344 3.656 26 N -0.388 5.388 27 O -0.478 6.478 28 C -0.083 4.083 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.170 0.830 39 H 0.195 0.805 40 H 0.192 0.808 41 H 0.253 0.747 42 H 0.246 0.754 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.072 -21.001 9.670 23.670 hybrid contribution -1.024 0.833 -0.448 1.394 sum 4.048 -20.167 9.222 22.542 Atomic orbital electron populations 1.69759 1.09351 1.31314 1.37521 1.26880 0.95263 1.04396 0.90336 0.85454 0.79880 0.76414 0.79125 1.19034 1.20516 1.16930 1.19357 0.94366 0.95050 1.41742 0.93126 1.17724 0.92336 0.91845 0.89898 1.21149 0.97053 1.04764 1.04465 1.21027 0.92893 0.98131 0.98302 1.20916 0.99950 0.99993 1.03864 1.20935 0.94080 0.97573 0.96179 1.19474 0.94100 1.01452 1.03731 1.20075 1.02069 0.88961 0.97169 1.24432 0.74438 0.83056 0.87094 1.90626 1.55165 1.79047 1.17154 1.86569 1.69636 1.29447 1.41930 1.21859 0.98286 0.84501 0.92456 1.19422 0.93924 0.96882 1.01061 1.21654 1.00046 0.92075 0.94526 1.21593 0.95754 0.99512 0.96622 1.21799 0.93472 0.95501 0.97062 1.19888 0.94181 0.99393 1.02714 1.18536 0.87292 0.81377 0.78387 1.43488 1.17886 1.29110 1.48334 1.90842 1.60763 1.36992 1.59212 1.21144 0.95169 0.97166 0.94772 0.89779 0.89038 0.85761 0.84910 0.84888 0.84511 0.88184 0.92694 0.88728 0.82957 0.80493 0.80812 0.74682 0.75435 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.42 13.93 21.83 0.30 -49.11 16 2 C 0.05 2.54 5.41 85.26 0.46 3.00 16 3 Si 0.97 44.59 24.52 68.60 1.68 46.27 16 4 H -0.26 -11.75 6.71 99.48 0.67 -11.08 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.25 -11.28 6.85 99.48 0.68 -10.60 16 7 C -0.48 -27.59 8.56 23.46 0.20 -27.39 16 8 H 0.05 3.20 6.99 -2.91 -0.02 3.18 16 9 C 0.08 4.44 5.10 -21.29 -0.11 4.33 16 10 C -0.26 -12.64 7.17 22.73 0.16 -12.47 16 11 C -0.09 -3.59 10.02 22.22 0.22 -3.37 16 12 C -0.23 -8.73 10.05 22.46 0.23 -8.50 16 13 C -0.07 -2.73 9.66 22.22 0.21 -2.51 16 14 C -0.19 -8.44 4.43 -19.40 -0.09 -8.53 16 15 C -0.05 -1.80 5.30 29.10 0.15 -1.64 16 16 C 0.47 19.51 7.55 71.23 0.54 20.05 16 17 O -0.53 -26.00 15.78 21.97 0.35 -25.66 16 18 O -0.36 -13.07 10.20 -51.46 -0.53 -13.60 16 19 C 0.10 3.22 5.59 71.24 0.40 3.61 16 20 C -0.11 -2.88 5.51 -19.90 -0.11 -2.99 16 21 C -0.06 -1.08 9.69 22.33 0.22 -0.87 16 22 C -0.12 -1.22 10.03 22.23 0.22 -1.00 16 23 C -0.06 -0.68 9.54 22.53 0.21 -0.47 16 24 C -0.16 -3.44 5.87 -20.09 -0.12 -3.56 16 25 C 0.56 13.19 8.05 86.79 0.70 13.89 16 26 N -0.82 -9.27 8.82 -175.61 -1.55 -10.82 16 27 O -0.60 -21.29 17.18 -3.88 -0.07 -21.36 16 28 C -0.06 -1.81 9.24 22.52 0.21 -1.60 16 29 H 0.29 15.25 8.30 -92.71 -0.77 14.48 16 30 H 0.09 4.59 4.74 -2.91 -0.01 4.57 16 31 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 33 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 34 H 0.14 4.01 8.05 -2.39 -0.02 3.99 16 35 H 0.10 4.20 7.15 -2.39 -0.02 4.18 16 36 H 0.05 1.97 8.07 -2.39 -0.02 1.95 16 37 H 0.09 2.60 8.08 -2.38 -0.02 2.58 16 38 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.17 0.25 6.41 -2.91 -0.02 0.23 16 41 H 0.42 1.11 6.86 -92.71 -0.64 0.47 16 42 H 0.41 3.86 8.93 -92.71 -0.83 3.03 16 43 H 0.10 3.61 7.65 -2.91 -0.02 3.59 16 Total: -1.00 -83.84 369.40 3.46 -80.38 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.44 Total: 23.92 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 3.72 Total: -30.02 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -1.25 Total: -59.93 kcal Atomic # 8 Polarization: -60.37 SS G_CDS: -0.24 Total: -60.62 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.68 Total: 46.27 kcal Total: -83.84 3.46 -80.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.949 kcal (2) G-P(sol) polarization free energy of solvation -83.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds