Wall clock time and date at job start Tue Mar 31 2020 22:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99598 * 2 1 4 4 H 1.48493 * 109.47164 * 269.99965 * 3 2 1 5 5 H 1.48501 * 109.47139 * 29.99945 * 3 2 1 6 6 H 1.48508 * 109.46857 * 149.99898 * 3 2 1 7 7 C 1.37873 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99917 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47115 * 179.97438 * 9 7 2 11 11 C 1.39676 * 119.99999 * 84.99601 * 10 9 7 12 12 C 1.38918 * 120.07049 * 155.25518 * 11 10 9 13 13 C 1.38104 * 119.92017 * 180.30184 * 12 11 10 14 14 C 1.38286 * 120.07376 * 359.44392 * 13 12 11 15 15 C 1.38289 * 120.15212 * 0.28357 * 14 13 12 16 16 C 1.38099 * 120.07123 * 359.97438 * 15 14 13 17 17 S 1.65608 * 120.00043 * 265.00023 * 10 9 7 18 18 O 1.42101 * 104.27331 * 26.07048 * 17 10 9 19 19 O 1.42096 * 104.27349 * 153.92581 * 17 10 9 20 20 C 1.81394 * 104.44827 * 269.99940 * 17 10 9 21 21 C 1.52998 * 109.47319 * 180.02562 * 20 17 10 22 22 H 1.09001 * 109.52264 * 54.99108 * 21 20 17 23 23 C 1.53171 * 109.52695 * 175.12538 * 21 20 17 24 24 C 1.53186 * 109.03401 * 176.82162 * 23 21 20 25 25 C 1.53092 * 109.21439 * 303.11531 * 24 23 21 26 26 O 1.42905 * 109.41639 * 57.57063 * 25 24 23 27 27 C 1.42897 * 114.09746 * 298.84688 * 26 25 24 28 28 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47034 * 59.99888 * 9 7 2 30 30 H 1.08995 * 109.47348 * 299.99361 * 9 7 2 31 31 H 1.07998 * 120.03882 * 0.02562 * 12 11 10 32 32 H 1.08002 * 119.96506 * 179.72934 * 13 12 11 33 33 H 1.08005 * 119.92310 * 180.30200 * 14 13 12 34 34 H 1.07997 * 119.96278 * 180.02562 * 15 14 13 35 35 H 1.08006 * 120.03438 * 180.02562 * 16 15 14 36 36 H 1.09001 * 109.47151 * 299.99978 * 20 17 10 37 37 H 1.08996 * 109.47485 * 60.00190 * 20 17 10 38 38 H 1.08997 * 109.54418 * 296.74983 * 23 21 20 39 39 H 1.09001 * 109.54199 * 57.01666 * 23 21 20 40 40 H 1.08998 * 109.52545 * 183.17786 * 24 23 21 41 41 H 1.08994 * 109.51952 * 63.04720 * 24 23 21 42 42 H 1.09009 * 109.48086 * 297.58956 * 25 24 23 43 43 H 1.08996 * 109.48436 * 177.55949 * 25 24 23 44 44 H 1.09005 * 109.48355 * 301.16830 * 27 26 25 45 45 H 1.09003 * 109.48916 * 181.14804 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.7372 -4.0748 1.2056 12 6 3.2005 -5.3806 1.3061 13 6 3.7222 -5.8363 2.5009 14 6 3.7942 -4.9909 3.5929 15 6 3.3390 -3.6888 3.4945 16 6 2.8113 -3.2283 2.3044 17 16 2.6462 -4.3232 -1.4282 18 8 2.4611 -3.3025 -2.3994 19 8 3.9354 -4.8608 -1.1671 20 6 1.4373 -5.6546 -1.6656 21 6 1.7440 -6.3957 -2.9685 22 1 2.7767 -6.7442 -2.9549 23 6 0.8010 -7.5944 -3.1098 24 6 1.0637 -8.2809 -4.4538 25 6 0.8848 -7.2629 -5.5831 26 8 1.7697 -6.1605 -5.3735 27 6 1.5388 -5.4505 -4.1552 28 1 -0.4851 0.8400 0.0004 29 1 0.6248 -2.5570 -0.8897 30 1 0.6242 -2.5568 0.8903 31 1 3.1488 -6.0399 0.4523 32 1 4.0787 -6.8526 2.5811 33 1 4.2071 -5.3484 4.5247 34 1 3.3970 -3.0311 4.3492 35 1 2.4563 -2.2111 2.2281 36 1 1.4953 -6.3513 -0.8294 37 1 0.4346 -5.2302 -1.7160 38 1 0.9823 -8.2987 -2.2979 39 1 -0.2329 -7.2513 -3.0726 40 1 0.3586 -9.1013 -4.5878 41 1 2.0819 -8.6693 -4.4715 42 1 -0.1452 -6.9059 -5.5909 43 1 1.1129 -7.7357 -6.5383 44 1 0.5175 -5.0697 -4.1442 45 1 2.2380 -4.6175 -4.0816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788139386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:12 Heat of formation + Delta-G solvation = -114.456810 kcal Electronic energy + Delta-G solvation = -28550.540448 eV Core-core repulsion = 24659.127563 eV Total energy + Delta-G solvation = -3891.412885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52452 -40.40603 -38.33393 -37.17131 -36.94276 -35.82288 -34.65365 -33.19699 -31.83298 -30.72911 -28.77488 -28.38349 -26.13868 -24.98354 -23.90545 -23.31286 -22.63882 -21.25194 -20.14865 -18.99884 -18.82565 -17.94739 -17.52846 -17.41520 -17.11566 -16.84895 -16.52286 -16.12462 -15.86200 -15.51155 -15.33292 -14.90075 -14.86291 -14.56058 -14.30269 -14.04604 -13.95456 -13.83604 -13.71754 -13.45339 -13.26323 -13.08274 -12.99860 -12.84148 -12.64383 -12.49536 -12.39555 -12.29465 -12.14403 -12.11248 -12.07299 -11.64033 -11.45817 -11.28692 -10.87109 -10.64201 -10.54073 -9.76564 -8.89141 -8.24750 -6.36175 -0.90447 0.55037 0.61963 1.35397 1.38177 1.46347 1.52912 2.36894 2.68837 2.76528 3.01383 3.03036 3.08064 3.36271 3.46760 3.61040 3.76291 3.97017 4.00860 4.08152 4.10993 4.20655 4.27048 4.39555 4.47079 4.49236 4.59028 4.61921 4.69808 4.74855 4.81921 4.90380 4.92107 5.02635 5.06726 5.10099 5.13513 5.28491 5.30750 5.55334 5.60991 5.73608 5.81818 5.85332 6.01078 6.12373 6.30430 6.68693 7.31411 8.81887 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.004693 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.041681 B = 5965.112149 C = 8028.300751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.540 4.540 8 H 0.045 0.955 9 C 0.263 3.737 10 N -0.936 5.936 11 C 0.161 3.839 12 C -0.184 4.184 13 C -0.089 4.089 14 C -0.149 4.149 15 C -0.099 4.099 16 C -0.167 4.167 17 S 2.581 3.419 18 O -0.973 6.973 19 O -0.978 6.978 20 C -0.600 4.600 21 C -0.112 4.112 22 H 0.092 0.908 23 C -0.108 4.108 24 C -0.154 4.154 25 C 0.041 3.959 26 O -0.397 6.397 27 C 0.032 3.968 28 H 0.269 0.731 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -19.514 -0.495 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.579 4.579 8 H 0.063 0.937 9 C 0.141 3.859 10 N -0.759 5.759 11 C 0.065 3.935 12 C -0.206 4.206 13 C -0.107 4.107 14 C -0.168 4.168 15 C -0.118 4.118 16 C -0.189 4.189 17 S 2.681 3.319 18 O -0.964 6.964 19 O -0.968 6.968 20 C -0.733 4.733 21 C -0.133 4.133 22 H 0.110 0.890 23 C -0.146 4.146 24 C -0.192 4.192 25 C -0.035 4.035 26 O -0.316 6.316 27 C -0.045 4.045 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.147 0.853 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.187 0.813 37 H 0.172 0.828 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.130 0.870 44 H 0.089 0.911 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.535 -18.984 -1.249 19.032 hybrid contribution -0.413 1.359 0.095 1.424 sum 0.121 -17.625 -1.154 17.663 Atomic orbital electron populations 1.69969 1.06932 1.28229 1.50687 1.25599 0.95733 1.02182 0.94413 0.85680 0.78967 0.79507 0.78368 1.20463 1.19491 1.19426 1.21558 0.93009 0.91992 1.51383 0.93711 1.18881 0.86811 0.82456 0.97787 1.55570 1.55907 1.44674 1.19748 1.17909 0.96106 0.93164 0.86358 1.21197 1.05779 0.92992 1.00602 1.21248 0.97107 1.01113 0.91213 1.21418 1.01994 0.93375 1.00052 1.21312 0.96896 0.97042 0.96534 1.21329 1.03677 1.00017 0.93867 1.05822 0.76741 0.76540 0.72786 1.93586 1.87126 1.56059 1.59608 1.93545 1.37916 1.81276 1.84066 1.30539 1.18090 1.16866 1.07804 1.21641 1.03240 0.97942 0.90454 0.88976 1.21679 0.98822 0.95001 0.99130 1.22241 1.03975 0.99002 0.93969 1.22989 0.93792 0.86675 1.00053 1.87952 1.59133 1.45644 1.38876 1.23099 1.02938 0.93988 0.84464 0.92175 0.94905 0.94733 0.85275 0.82335 0.82660 0.84111 0.86572 0.81296 0.82843 0.88707 0.90128 0.87667 0.90893 0.92103 0.86950 0.91107 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16 2 C 0.02 1.19 5.46 84.65 0.46 1.65 16 3 Si 0.95 45.05 29.54 68.60 2.03 47.07 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.54 -30.79 7.90 25.60 0.20 -30.59 16 8 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.26 13.33 4.38 85.63 0.38 13.70 16 10 N -0.94 -40.46 2.91 -343.13 -1.00 -41.46 16 11 C 0.16 6.44 6.05 38.21 0.23 6.67 16 12 C -0.18 -5.98 8.42 22.40 0.19 -5.79 16 13 C -0.09 -2.29 10.04 22.25 0.22 -2.07 16 14 C -0.15 -3.75 10.04 22.29 0.22 -3.52 16 15 C -0.10 -3.05 10.04 22.25 0.22 -2.82 16 16 C -0.17 -6.65 9.04 22.40 0.20 -6.45 16 17 S 2.58 100.74 4.39 -56.49 -0.25 100.49 16 18 O -0.97 -46.17 14.80 -127.65 -1.89 -48.06 16 19 O -0.98 -40.63 15.15 -127.65 -1.93 -42.57 16 20 C -0.60 -15.07 5.49 71.98 0.40 -14.67 16 21 C -0.11 -2.62 2.38 -10.70 -0.03 -2.65 16 22 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 23 C -0.11 -1.70 5.32 30.71 0.16 -1.54 16 24 C -0.15 -2.14 6.13 30.69 0.19 -1.95 16 25 C 0.04 0.72 6.84 72.01 0.49 1.21 16 26 O -0.40 -10.78 10.77 -148.98 -1.60 -12.38 16 27 C 0.03 0.92 5.74 72.01 0.41 1.33 16 28 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.03 1.72 7.61 -2.39 -0.02 1.71 16 30 H 0.03 1.79 7.74 -2.39 -0.02 1.77 16 31 H 0.13 3.71 5.13 -2.91 -0.01 3.70 16 32 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 35 H 0.12 5.33 6.17 -2.91 -0.02 5.31 16 36 H 0.17 3.15 7.20 -2.39 -0.02 3.14 16 37 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.08 2.80 5.79 -2.39 -0.01 2.79 16 Total: -1.00 -75.53 368.63 0.58 -74.95 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.98 Total: 22.19 kcal Atomic # 6 Polarization: -51.45 SS G_CDS: 3.96 Total: -47.49 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -0.71 Total: -94.21 kcal Atomic # 8 Polarization: -97.58 SS G_CDS: -5.43 Total: -103.01 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 100.74 SS G_CDS: -0.25 Total: 100.49 kcal Total: -75.53 0.58 -74.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788139386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.503 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds