Wall clock time and date at job start Tue Mar 31 2020 22:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 C 1.53065 * 109.29648 * 305.57538 * 11 10 9 13 13 N 1.46503 * 109.44591 * 181.23295 * 12 11 10 14 14 C 1.34775 * 119.99376 * 84.79556 * 13 12 11 15 15 O 1.21587 * 120.00649 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99840 * 180.02562 * 14 13 12 17 17 N 1.40106 * 120.00134 * 0.02562 * 16 14 13 18 18 C 1.38991 * 120.00194 * 179.97438 * 17 16 14 19 19 C 1.39102 * 119.69784 * 179.73204 * 18 17 16 20 20 C 1.38343 * 119.12753 * 179.73746 * 19 18 17 21 21 C 1.38819 * 118.51833 * 0.52880 * 20 19 18 22 22 C 1.38196 * 119.31753 * 359.73288 * 21 20 19 23 23 Cl 1.73606 * 119.58482 * 179.97438 * 22 21 20 24 24 N 1.32058 * 120.82204 * 359.97438 * 22 21 20 25 25 C 1.53049 * 109.65631 * 61.15762 * 12 11 10 26 26 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 27 27 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 29 29 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 30 30 H 1.09005 * 109.49756 * 65.39178 * 11 10 9 31 31 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 32 32 H 1.08996 * 109.35399 * 301.12990 * 12 11 10 33 33 H 0.96995 * 120.00576 * 264.80141 * 13 12 11 34 34 H 0.96997 * 119.99918 * 180.02562 * 16 14 13 35 35 H 0.97004 * 119.99208 * 0.02562 * 17 16 14 36 36 H 1.08001 * 120.44048 * 0.02562 * 19 18 17 37 37 H 1.08004 * 120.73745 * 180.24170 * 20 19 18 38 38 H 1.08001 * 120.33988 * 179.75551 * 21 20 19 39 39 H 1.09002 * 109.49883 * 178.75013 * 25 12 11 40 40 H 1.08997 * 109.52642 * 58.66321 * 25 12 11 41 41 H 1.09007 * 109.58325 * 246.20224 * 26 9 7 42 42 H 1.08996 * 109.58499 * 6.48109 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 6 0.8120 -4.7008 1.8361 13 7 1.0399 -5.6475 2.9307 14 6 -0.0049 -6.2695 3.5120 15 8 -1.1365 -6.0453 3.1278 16 7 0.2046 -7.1400 4.5194 17 7 1.5084 -7.3980 4.9626 18 6 1.7244 -8.2954 6.0018 19 6 3.0219 -8.5510 6.4331 20 6 3.2229 -9.4422 7.4720 21 6 2.1163 -10.0587 8.0398 22 6 0.8553 -9.7625 7.5582 23 17 -0.5333 -10.5301 8.2628 24 7 0.6935 -8.9029 6.5689 25 6 2.0675 -4.6174 0.9647 26 6 1.8138 -3.6528 -0.1981 27 1 -0.4850 0.8400 -0.0004 28 1 0.0994 -1.3343 1.6687 29 1 -0.6774 -2.6381 0.7363 30 1 1.3429 -2.9692 3.0020 31 1 -0.3880 -3.3841 3.0518 32 1 -0.0282 -5.0410 1.2308 33 1 1.9426 -5.8266 3.2371 34 1 -0.5474 -7.5880 4.9375 35 1 2.2602 -6.9497 4.5446 36 1 3.8611 -8.0568 5.9662 37 1 4.2190 -9.6569 7.8302 38 1 2.2397 -10.7624 8.8498 39 1 2.3042 -5.6063 0.5721 40 1 2.9028 -4.2540 1.5632 41 1 1.0401 -4.0604 -0.8488 42 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814297028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:45 Heat of formation + Delta-G solvation = 70.400144 kcal Electronic energy + Delta-G solvation = -26324.853336 eV Core-core repulsion = 22368.165150 eV Total energy + Delta-G solvation = -3956.688185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91615 -40.03444 -37.64922 -37.15067 -36.37622 -34.48359 -32.97874 -32.52176 -31.86671 -30.05204 -29.43363 -28.73948 -25.11082 -24.13341 -23.44759 -22.40064 -22.26279 -20.68012 -19.82327 -18.96418 -18.72684 -17.24235 -16.74008 -16.43953 -16.14259 -15.65006 -15.26362 -15.19323 -14.92477 -14.80764 -14.32816 -13.84420 -13.74952 -13.53573 -13.05801 -13.02550 -12.64156 -12.60737 -12.41498 -11.69005 -11.65202 -11.52684 -11.16679 -10.99142 -10.73315 -10.48435 -10.38958 -10.34979 -10.27596 -10.14662 -10.08408 -9.80042 -9.64976 -9.59973 -8.83640 -8.45618 -7.85096 -6.70400 -5.80190 -3.23534 0.55304 0.82969 1.34388 1.67229 2.92819 3.09986 3.28943 3.36226 3.43365 3.45016 3.92754 4.30175 4.44719 4.47717 4.65402 4.82909 5.02591 5.22317 5.36301 5.41103 5.42567 5.59325 5.67183 5.74678 5.77470 6.03714 6.16317 6.17384 6.25825 6.36219 6.50461 6.61818 6.67400 6.79342 6.89922 6.92964 7.02803 7.34581 7.39889 7.67106 7.77806 8.03835 8.43334 8.50814 9.19097 9.82375 10.38955 11.28381 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.002004 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.216527 B =13968.187962 C =14339.274542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.147 4.147 12 C 0.167 3.833 13 N -0.737 5.737 14 C 0.710 3.290 15 O -0.568 6.568 16 N -0.532 5.532 17 N -0.518 5.518 18 C 0.428 3.572 19 C -0.229 4.229 20 C -0.014 4.014 21 C -0.216 4.216 22 C 0.231 3.769 23 Cl -0.030 7.030 24 N -0.543 5.543 25 C -0.139 4.139 26 C 0.149 3.851 27 H 0.255 0.745 28 H 0.089 0.911 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.384 0.616 34 H 0.440 0.560 35 H 0.433 0.567 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.021 0.979 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.166 -21.774 16.463 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.188 4.188 12 C 0.063 3.937 13 N -0.392 5.392 14 C 0.409 3.591 15 O -0.441 6.441 16 N -0.289 5.289 17 N -0.250 5.250 18 C 0.191 3.809 19 C -0.255 4.255 20 C -0.040 4.040 21 C -0.241 4.241 22 C 0.066 3.934 23 Cl -0.002 7.002 24 N -0.264 5.264 25 C -0.179 4.179 26 C 0.021 3.979 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.217 0.783 34 H 0.286 0.714 35 H 0.277 0.723 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.135 -21.141 15.686 27.030 hybrid contribution 1.480 0.530 0.586 1.677 sum 7.615 -20.611 16.272 27.342 Atomic orbital electron populations 1.70031 1.05275 1.25614 1.53505 1.25074 0.95281 0.98488 1.00775 0.86312 0.79113 0.83690 0.77711 1.21369 1.21552 1.20527 1.19141 0.92502 0.84760 1.42100 0.91680 1.44103 1.35922 1.01518 1.49957 1.20758 0.88714 0.98081 0.87753 1.22597 1.00542 0.95099 1.00549 1.21014 0.98872 0.88013 0.85781 1.45582 1.07181 1.47088 1.39349 1.15812 0.85619 0.78635 0.79055 1.91048 1.21354 1.67008 1.64665 1.44669 0.97921 1.48434 1.37841 1.43191 0.99194 1.46534 1.36093 1.17844 0.88766 0.87717 0.86599 1.21268 0.95481 1.05769 1.03002 1.21284 0.99173 0.91500 0.92006 1.21544 0.90788 1.06346 1.05397 1.21196 0.88070 0.92448 0.91651 1.98426 1.42931 1.77966 1.80837 1.66142 1.34257 1.12881 1.13088 1.22352 0.96578 0.99817 0.99112 1.20834 0.98104 0.86730 0.92212 0.93533 0.89244 0.96027 0.92757 0.92665 0.89743 0.78298 0.71385 0.72264 0.83840 0.83414 0.83836 0.92582 0.91880 0.96110 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 11.20 55.49 0.62 -25.54 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.51 3.00 -172.32 -0.52 -15.03 16 10 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 11 C -0.15 -2.89 5.66 -26.60 -0.15 -3.04 16 12 C 0.17 2.81 2.41 -67.87 -0.16 2.64 16 13 N -0.74 -9.87 5.04 -58.62 -0.30 -10.16 16 14 C 0.71 10.71 8.64 -86.92 -0.75 9.96 16 15 O -0.57 -11.13 16.84 5.29 0.09 -11.04 16 16 N -0.53 -6.41 6.29 27.63 0.17 -6.23 16 17 N -0.52 -4.56 6.42 31.12 0.20 -4.36 16 18 C 0.43 3.77 7.59 -155.03 -1.18 2.59 16 19 C -0.23 -1.35 9.94 -39.22 -0.39 -1.74 16 20 C -0.01 -0.07 10.16 -39.33 -0.40 -0.47 16 21 C -0.22 -1.38 9.87 -39.38 -0.39 -1.77 16 22 C 0.23 2.08 7.27 -17.47 -0.13 1.96 16 23 Cl -0.03 -0.26 29.10 -51.86 -1.51 -1.77 16 24 N -0.54 -5.67 9.35 -9.56 -0.09 -5.76 16 25 C -0.14 -2.18 5.55 -26.61 -0.15 -2.33 16 26 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 33 H 0.38 3.80 6.52 -40.82 -0.27 3.54 16 34 H 0.44 5.55 8.05 -182.60 -1.47 4.08 16 35 H 0.43 2.73 6.69 -182.59 -1.22 1.51 16 36 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.15 0.27 8.06 -52.48 -0.42 -0.15 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -33.24 363.60 -12.28 -45.52 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.43 Total: 4.61 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -3.97 Total: 7.88 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: 0.09 Total: -67.09 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.51 Total: -1.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.24 -12.28 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814297028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.922 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds