Wall clock time and date at job start Tue Mar 31 2020 22:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 C 1.53065 * 109.29648 * 305.57538 * 11 10 9 13 13 N 1.46503 * 109.44591 * 181.23295 * 12 11 10 14 14 C 1.34775 * 119.99376 * 84.79556 * 13 12 11 15 15 O 1.21587 * 120.00649 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99840 * 180.02562 * 14 13 12 17 17 N 1.40106 * 120.00134 * 0.02562 * 16 14 13 18 18 C 1.38991 * 120.00194 * 179.97438 * 17 16 14 19 19 C 1.39102 * 119.69784 * 179.73204 * 18 17 16 20 20 C 1.38343 * 119.12753 * 179.73746 * 19 18 17 21 21 C 1.38819 * 118.51833 * 0.52880 * 20 19 18 22 22 C 1.38196 * 119.31753 * 359.73288 * 21 20 19 23 23 Cl 1.73606 * 119.58482 * 179.97438 * 22 21 20 24 24 N 1.32058 * 120.82204 * 359.97438 * 22 21 20 25 25 C 1.53049 * 109.65631 * 61.15762 * 12 11 10 26 26 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 27 27 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 29 29 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 30 30 H 1.09005 * 109.49756 * 65.39178 * 11 10 9 31 31 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 32 32 H 1.08996 * 109.35399 * 301.12990 * 12 11 10 33 33 H 0.96995 * 120.00576 * 264.80141 * 13 12 11 34 34 H 0.96997 * 119.99918 * 180.02562 * 16 14 13 35 35 H 0.97004 * 119.99208 * 0.02562 * 17 16 14 36 36 H 1.08001 * 120.44048 * 0.02562 * 19 18 17 37 37 H 1.08004 * 120.73745 * 180.24170 * 20 19 18 38 38 H 1.08001 * 120.33988 * 179.75551 * 21 20 19 39 39 H 1.09002 * 109.49883 * 178.75013 * 25 12 11 40 40 H 1.08997 * 109.52642 * 58.66321 * 25 12 11 41 41 H 1.09007 * 109.58325 * 246.20224 * 26 9 7 42 42 H 1.08996 * 109.58499 * 6.48109 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 6 0.8120 -4.7008 1.8361 13 7 1.0399 -5.6475 2.9307 14 6 -0.0049 -6.2695 3.5120 15 8 -1.1365 -6.0453 3.1278 16 7 0.2046 -7.1400 4.5194 17 7 1.5084 -7.3980 4.9626 18 6 1.7244 -8.2954 6.0018 19 6 3.0219 -8.5510 6.4331 20 6 3.2229 -9.4422 7.4720 21 6 2.1163 -10.0587 8.0398 22 6 0.8553 -9.7625 7.5582 23 17 -0.5333 -10.5301 8.2628 24 7 0.6935 -8.9029 6.5689 25 6 2.0675 -4.6174 0.9647 26 6 1.8138 -3.6528 -0.1981 27 1 -0.4850 0.8400 -0.0004 28 1 0.0994 -1.3343 1.6687 29 1 -0.6774 -2.6381 0.7363 30 1 1.3429 -2.9692 3.0020 31 1 -0.3880 -3.3841 3.0518 32 1 -0.0282 -5.0410 1.2308 33 1 1.9426 -5.8266 3.2371 34 1 -0.5474 -7.5880 4.9375 35 1 2.2602 -6.9497 4.5446 36 1 3.8611 -8.0568 5.9662 37 1 4.2190 -9.6569 7.8302 38 1 2.2397 -10.7624 8.8498 39 1 2.3042 -5.6063 0.5721 40 1 2.9028 -4.2540 1.5632 41 1 1.0401 -4.0604 -0.8488 42 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814297028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:44 Heat of formation + Delta-G solvation = 47.728502 kcal Electronic energy + Delta-G solvation = -26325.836452 eV Core-core repulsion = 22368.165150 eV Total energy + Delta-G solvation = -3957.671301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69665 -41.02085 -39.14107 -37.88831 -37.21256 -36.06409 -33.97044 -33.44972 -33.05878 -31.70588 -31.05473 -29.45564 -26.93604 -24.77988 -24.05948 -23.93305 -23.85799 -21.91653 -21.26277 -19.95303 -19.68195 -18.71755 -17.85972 -17.14772 -16.93931 -16.78883 -16.64586 -16.26262 -15.92540 -15.75860 -15.63819 -15.34908 -15.27382 -14.75950 -14.43762 -14.17722 -14.04889 -13.61651 -13.19049 -13.04888 -13.01403 -12.68945 -12.54899 -12.33662 -12.31240 -12.13036 -12.08013 -11.88436 -11.66347 -11.55742 -11.28939 -10.94834 -10.73497 -10.58516 -10.42037 -10.05112 -8.70514 -8.57379 -7.86579 -5.32868 0.03483 0.33727 0.76371 0.87785 1.48054 1.49729 1.59275 1.87635 1.95842 2.52457 2.71568 3.20113 3.30301 3.67115 3.82216 3.87151 3.98265 4.07635 4.25346 4.32801 4.35302 4.46767 4.48185 4.67408 4.78040 4.83638 4.98151 5.04828 5.08259 5.13454 5.16687 5.23813 5.32820 5.44572 5.48188 5.57465 5.65101 5.70510 5.87768 6.19214 6.39597 6.69543 7.14090 7.15558 7.37751 7.85457 8.38059 9.20559 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.002004 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.216527 B =13968.187962 C =14339.274542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.057 4.057 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.259 4.259 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.182 3.818 11 C -0.131 4.131 12 C 0.179 3.821 13 N -0.718 5.718 14 C 0.709 3.291 15 O -0.620 6.620 16 N -0.525 5.525 17 N -0.514 5.514 18 C 0.404 3.596 19 C -0.214 4.214 20 C -0.009 4.009 21 C -0.207 4.207 22 C 0.201 3.799 23 Cl -0.043 7.043 24 N -0.576 5.576 25 C -0.120 4.120 26 C 0.140 3.860 27 H 0.249 0.751 28 H 0.054 0.946 29 H -0.012 1.012 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.406 0.594 34 H 0.438 0.562 35 H 0.444 0.556 36 H 0.177 0.823 37 H 0.189 0.811 38 H 0.164 0.836 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.011 0.989 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.300 -23.408 17.786 31.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.252 4.252 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.093 0.907 9 N -0.332 5.332 10 C 0.055 3.945 11 C -0.172 4.172 12 C 0.074 3.926 13 N -0.375 5.375 14 C 0.408 3.592 15 O -0.498 6.498 16 N -0.278 5.278 17 N -0.251 5.251 18 C 0.169 3.831 19 C -0.240 4.240 20 C -0.034 4.034 21 C -0.231 4.231 22 C 0.038 3.962 23 Cl -0.014 7.014 24 N -0.298 5.298 25 C -0.160 4.160 26 C 0.014 3.986 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.006 0.994 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.283 0.717 35 H 0.291 0.709 36 H 0.195 0.805 37 H 0.206 0.794 38 H 0.182 0.818 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.029 0.971 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.356 -22.855 17.063 30.344 hybrid contribution 0.250 0.905 0.237 0.969 sum 10.606 -21.949 17.300 29.892 Atomic orbital electron populations 1.70210 1.06944 1.25832 1.55564 1.25895 0.95984 1.01874 1.01406 0.85259 0.78134 0.79385 0.77551 1.21152 1.22409 1.18986 1.19561 0.93038 0.85711 1.40602 0.90674 1.44352 1.35634 1.02740 1.50515 1.20456 0.87882 0.97301 0.88818 1.22335 1.00370 0.95906 0.98549 1.20616 0.98899 0.86747 0.86342 1.45062 1.08048 1.45988 1.38368 1.15830 0.85002 0.78940 0.79416 1.91017 1.23478 1.68800 1.66461 1.44335 0.99827 1.47040 1.36566 1.43173 0.97547 1.47520 1.36827 1.18215 0.89719 0.88225 0.86975 1.21696 0.94938 1.04961 1.02412 1.21809 1.00400 0.90194 0.91026 1.21915 0.90099 1.05880 1.05207 1.21455 0.88775 0.93481 0.92494 1.98414 1.43857 1.78186 1.80988 1.65985 1.35834 1.13866 1.14093 1.22144 0.95984 1.00562 0.97261 1.21058 0.98015 0.85533 0.93953 0.94246 0.92730 0.99377 0.91780 0.93820 0.92341 0.75665 0.71731 0.70881 0.80544 0.79419 0.81805 0.88790 0.90138 0.97117 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.72 11.20 21.65 0.24 -56.48 16 2 C -0.06 -3.16 4.92 84.86 0.42 -2.74 16 3 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.26 -13.90 9.58 84.03 0.81 -13.09 16 8 H 0.08 3.82 7.89 -2.91 -0.02 3.79 16 9 N -0.61 -30.02 3.00 -699.10 -2.09 -32.11 16 10 C 0.18 9.13 5.30 86.36 0.46 9.59 16 11 C -0.13 -5.18 5.66 30.68 0.17 -5.01 16 12 C 0.18 5.84 2.41 45.03 0.11 5.95 16 13 N -0.72 -17.83 5.04 -457.63 -2.31 -20.14 16 14 C 0.71 21.08 8.64 179.05 1.55 22.62 16 15 O -0.62 -25.03 16.84 -3.99 -0.07 -25.09 16 16 N -0.52 -12.24 6.29 -184.74 -1.16 -13.40 16 17 N -0.51 -7.89 6.42 -55.45 -0.36 -8.25 16 18 C 0.40 6.19 7.59 133.06 1.01 7.20 16 19 C -0.21 -1.64 9.94 22.50 0.22 -1.42 16 20 C -0.01 -0.05 10.16 22.43 0.23 0.18 16 21 C -0.21 -2.04 9.87 22.40 0.22 -1.82 16 22 C 0.20 3.39 7.27 84.65 0.62 4.01 16 23 Cl -0.04 -0.73 29.10 -2.72 -0.08 -0.81 16 24 N -0.58 -11.51 9.35 -184.15 -1.72 -13.23 16 25 C -0.12 -3.41 5.55 30.67 0.17 -3.24 16 26 C 0.14 5.42 6.52 86.36 0.56 5.98 16 27 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.05 3.10 6.06 -2.39 -0.01 3.08 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 33 H 0.41 6.58 6.52 -92.71 -0.60 5.97 16 34 H 0.44 11.14 8.05 -213.32 -1.72 9.42 16 35 H 0.44 4.08 6.69 -213.31 -1.43 2.65 16 36 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 37 H 0.19 -0.46 8.06 -2.91 -0.02 -0.48 16 38 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 39 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 Total: -1.00 -77.23 363.60 -1.64 -78.87 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -2.66 Total: 15.89 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 6.54 Total: 28.22 kcal Atomic # 7 Polarization: -136.21 SS G_CDS: -7.40 Total: -143.61 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.07 Total: -25.09 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -77.23 -1.64 -78.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814297028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.598 kcal (2) G-P(sol) polarization free energy of solvation -77.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds