Wall clock time and date at job start Tue Mar 31 2020 22:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00307 * 2 1 4 4 H 1.48502 * 109.47371 * 270.00198 * 3 2 1 5 5 H 1.48508 * 109.47236 * 30.00266 * 3 2 1 6 6 H 1.48502 * 109.47343 * 149.99877 * 3 2 1 7 7 C 1.38699 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00013 * 0.02562 * 7 2 1 9 9 O 1.34814 * 120.00081 * 179.97438 * 7 2 1 10 10 C 1.35517 * 116.99912 * 173.49550 * 9 7 2 11 11 C 1.38824 * 120.16300 * 352.14206 * 10 9 7 12 12 C 1.38034 * 120.07444 * 180.02562 * 11 10 9 13 13 C 1.38578 * 120.40210 * 359.97169 * 12 11 10 14 14 C 1.37820 * 120.32441 * 0.02562 * 13 12 11 15 15 C 1.39682 * 119.92112 * 359.97438 * 14 13 12 16 16 C 1.47506 * 120.19812 * 179.97438 * 15 14 13 17 17 O 1.21602 * 119.99672 * 172.54712 * 16 15 14 18 18 N 1.34768 * 120.00195 * 352.54701 * 16 15 14 19 19 C 1.46538 * 124.97091 * 5.34941 * 18 16 15 20 20 C 1.53753 * 105.19329 * 179.89249 * 19 18 16 21 21 H 1.08994 * 110.32588 * 119.07655 * 20 19 18 22 22 C 1.52993 * 110.60596 * 241.48367 * 20 19 18 23 23 O 1.42902 * 109.47193 * 181.71046 * 22 20 19 24 24 C 1.51219 * 104.56752 * 0.35258 * 20 19 18 25 25 C 1.38178 * 130.97637 * 179.80003 * 24 20 19 26 26 C 1.38225 * 120.14763 * 179.97438 * 25 24 20 27 27 C 1.38293 * 119.83551 * 0.02562 * 26 25 24 28 28 C 1.37834 * 120.22922 * 359.97438 * 27 26 25 29 29 C 1.38582 * 108.55026 * 359.77377 * 24 20 19 30 30 H 0.97005 * 119.99584 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.96684 * 359.97107 * 11 10 9 32 32 H 1.07996 * 119.79806 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.83711 * 180.02562 * 13 12 11 34 34 H 1.08001 * 120.04381 * 179.72554 * 14 13 12 35 35 H 1.08993 * 110.29886 * 298.94608 * 19 18 16 36 36 H 1.08998 * 110.30110 * 61.08895 * 19 18 16 37 37 H 1.09000 * 109.47668 * 301.71113 * 22 20 19 38 38 H 1.09003 * 109.47594 * 61.71409 * 22 20 19 39 39 H 0.96693 * 114.00039 * 179.97438 * 23 22 20 40 40 H 1.07998 * 119.92377 * 359.97438 * 25 24 20 41 41 H 1.08007 * 120.07783 * 180.02562 * 26 25 24 42 42 H 1.07999 * 119.89032 * 179.97438 * 27 26 25 43 43 H 1.07997 * 119.86290 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0086 -1.2012 -0.0005 8 1 1.4686 -2.1365 -0.0014 9 8 3.3568 -1.2013 -0.0011 10 6 3.9719 -2.4011 0.1352 11 6 3.2292 -3.5363 0.4298 12 6 3.8578 -4.7574 0.5688 13 6 5.2312 -4.8607 0.4153 14 6 5.9845 -3.7443 0.1227 15 6 5.3624 -2.5019 -0.0209 16 6 6.1629 -1.3031 -0.3335 17 8 5.6084 -0.2520 -0.5912 18 7 7.5088 -1.3726 -0.3335 19 6 8.2864 -2.6009 -0.1495 20 6 9.7578 -2.1626 -0.2320 21 1 10.2726 -2.3869 0.7021 22 6 10.4593 -2.8497 -1.4053 23 8 11.8329 -2.4565 -1.4354 24 6 9.6975 -0.6682 -0.4553 25 6 10.7037 0.2672 -0.6034 26 6 10.3901 1.5988 -0.8008 27 6 9.0657 1.9939 -0.8495 28 6 8.0585 1.0645 -0.7024 29 6 8.3672 -0.2829 -0.5031 30 1 -0.4850 0.8401 0.0004 31 1 2.1585 -3.4640 0.5514 32 1 3.2757 -5.6376 0.7984 33 1 5.7135 -5.8206 0.5256 34 1 7.0551 -3.8292 0.0084 35 1 8.0748 -3.0399 0.8254 36 1 8.0611 -3.3136 -0.9429 37 1 10.3935 -3.9311 -1.2852 38 1 9.9774 -2.5578 -2.3383 39 1 12.3404 -2.8553 -2.1553 40 1 11.7375 -0.0429 -0.5647 41 1 11.1775 2.3290 -0.9168 42 1 8.8197 3.0342 -1.0033 43 1 7.0262 1.3795 -0.7418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817790222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:46 Heat of formation + Delta-G solvation = -16.141718 kcal Electronic energy + Delta-G solvation = -29316.211847 eV Core-core repulsion = 25293.618273 eV Total energy + Delta-G solvation = -4022.593574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31889 -39.48600 -37.97926 -37.26054 -36.68410 -35.99722 -32.58547 -32.50236 -31.38695 -29.75308 -29.31341 -29.08802 -26.17338 -25.42942 -23.78344 -23.35338 -21.97051 -21.29470 -20.67559 -19.72253 -18.11104 -17.72190 -17.28970 -16.69427 -16.48167 -16.30053 -15.80518 -15.16110 -14.81499 -14.68856 -14.42365 -14.19621 -13.94821 -13.84741 -13.75558 -13.55884 -13.15730 -12.86247 -12.65852 -12.53548 -12.39795 -12.34977 -11.91853 -11.63814 -11.55440 -11.47254 -11.27192 -10.87464 -10.78967 -10.51056 -10.23170 -10.16305 -10.08346 -9.72033 -9.22297 -8.95595 -8.70078 -8.49510 -7.72795 -7.50426 -6.54909 -4.19576 1.23808 1.49139 1.68046 2.10255 2.91866 3.26821 3.31269 3.34455 3.55485 3.71308 3.94386 4.26799 4.28620 4.35092 4.52445 4.63584 4.80160 4.90672 5.00298 5.01761 5.04484 5.15293 5.21793 5.27199 5.30975 5.34602 5.49837 5.55461 5.60876 5.70678 5.79832 5.83907 5.96558 6.14727 6.26172 6.38297 6.49686 6.57099 6.60191 6.69012 6.76770 6.93773 7.07139 7.20040 7.32272 7.39126 7.54431 7.64899 7.86713 8.53037 8.79963 9.41962 10.50173 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.004219 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.099448 B = 6634.442377 C = 8793.494341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.395 4.395 8 H 0.109 0.891 9 O -0.166 6.166 10 C 0.203 3.797 11 C -0.224 4.224 12 C -0.049 4.049 13 C -0.220 4.220 14 C -0.080 4.080 15 C -0.227 4.227 16 C 0.571 3.429 17 O -0.493 6.493 18 N -0.559 5.559 19 C 0.102 3.898 20 C -0.057 4.057 21 H 0.102 0.898 22 C 0.089 3.911 23 O -0.568 6.568 24 C -0.140 4.140 25 C -0.063 4.063 26 C -0.157 4.157 27 C -0.091 4.091 28 C -0.139 4.139 29 C 0.162 3.838 30 H 0.283 0.717 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.147 0.853 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.379 0.621 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.332 -6.732 -1.408 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.469 4.469 8 H 0.126 0.874 9 O -0.066 6.066 10 C 0.145 3.855 11 C -0.243 4.243 12 C -0.068 4.068 13 C -0.239 4.239 14 C -0.097 4.097 15 C -0.232 4.232 16 C 0.365 3.635 17 O -0.367 6.367 18 N -0.283 5.283 19 C -0.020 4.020 20 C -0.076 4.076 21 H 0.120 0.880 22 C 0.011 3.989 23 O -0.373 6.373 24 C -0.143 4.143 25 C -0.081 4.081 26 C -0.176 4.176 27 C -0.110 4.110 28 C -0.160 4.160 29 C 0.066 3.934 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.226 0.774 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 20.457 -5.485 -1.044 21.206 hybrid contribution 0.051 0.121 -0.467 0.485 sum 20.508 -5.364 -1.511 21.252 Atomic orbital electron populations 1.69637 1.05782 1.29073 1.45602 1.24512 0.94995 0.99318 0.94553 0.86132 0.80674 0.80483 0.79692 1.19586 1.21092 1.17129 1.20925 0.76963 0.96820 1.52229 0.87386 1.83781 1.22281 1.25253 1.75299 1.19007 0.89923 0.86118 0.90488 1.21287 1.01502 0.92263 1.09286 1.21029 0.94510 0.96550 0.94664 1.20590 0.94106 0.97906 1.11266 1.22139 1.00849 0.91312 0.95414 1.18604 0.91197 0.93223 1.20186 1.18237 0.79091 0.89227 0.76913 1.90817 1.69356 1.30744 1.45798 1.45833 1.05374 1.06968 1.70135 1.22560 0.88765 0.87613 1.03041 1.20750 0.94743 0.92148 0.99930 0.88031 1.22142 0.82289 0.97055 0.97368 1.86458 1.21464 1.73599 1.55773 1.19776 0.92128 0.94569 1.07831 1.20360 0.98378 0.91660 0.97746 1.20968 0.96270 0.95701 1.04702 1.20923 0.92414 0.99085 0.98545 1.21031 1.01381 0.90235 1.03354 1.18439 0.89033 0.88872 0.97033 0.90693 0.84314 0.86742 0.86850 0.83603 0.88384 0.88966 0.92880 0.93189 0.77377 0.85558 0.86089 0.85830 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.90 13.96 55.48 0.77 -24.12 16 2 C 0.07 2.06 5.49 -17.51 -0.10 1.96 16 3 Si 0.91 23.17 28.62 -169.99 -4.86 18.31 16 4 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.25 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.39 -11.18 9.87 30.90 0.30 -10.87 16 8 H 0.11 3.04 5.61 -52.49 -0.29 2.75 16 9 O -0.17 -4.54 6.70 -20.91 -0.14 -4.68 16 10 C 0.20 4.74 6.65 -38.60 -0.26 4.48 16 11 C -0.22 -4.64 9.10 -39.44 -0.36 -5.00 16 12 C -0.05 -0.81 10.03 -39.53 -0.40 -1.21 16 13 C -0.22 -3.25 10.02 -39.61 -0.40 -3.65 16 14 C -0.08 -1.24 8.56 -39.20 -0.34 -1.57 16 15 C -0.23 -4.62 5.89 -104.81 -0.62 -5.23 16 16 C 0.57 11.99 7.74 -12.49 -0.10 11.89 16 17 O -0.49 -12.33 13.39 -16.45 -0.22 -12.55 16 18 N -0.56 -9.37 3.13 -120.59 -0.38 -9.75 16 19 C 0.10 1.18 4.70 -3.63 -0.02 1.16 16 20 C -0.06 -0.60 3.31 -91.13 -0.30 -0.90 16 21 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 22 C 0.09 0.73 6.27 37.15 0.23 0.97 16 23 O -0.57 -4.55 12.59 -35.23 -0.44 -4.99 16 24 C -0.14 -1.88 5.51 -104.26 -0.57 -2.46 16 25 C -0.06 -0.78 9.59 -39.61 -0.38 -1.16 16 26 C -0.16 -1.90 10.06 -39.57 -0.40 -2.30 16 27 C -0.09 -1.26 10.02 -39.71 -0.40 -1.65 16 28 C -0.14 -2.38 9.46 -39.20 -0.37 -2.75 16 29 C 0.16 2.68 6.62 -83.59 -0.55 2.13 16 30 H 0.28 7.52 8.31 -40.82 -0.34 7.19 16 31 H 0.14 2.98 5.78 -52.48 -0.30 2.68 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.15 1.70 2.73 -61.40 -0.17 1.54 16 35 H 0.10 1.00 6.70 -51.93 -0.35 0.65 16 36 H 0.09 0.90 6.33 -51.93 -0.33 0.57 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.38 1.37 9.12 45.56 0.42 1.79 16 40 H 0.13 1.36 7.54 -52.49 -0.40 0.97 16 41 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.14 2.75 6.29 -52.49 -0.33 2.42 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -34.39 353.65 -8.80 -43.19 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.85 Total: 5.43 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -5.01 Total: -16.16 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.40 Total: -33.87 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.80 Total: -22.22 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.86 Total: 18.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.39 -8.80 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817790222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.046 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds