Wall clock time and date at job start Tue Mar 31 2020 22:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34854 * 125.52881 * 2 1 4 4 C 1.36569 * 108.61571 * 180.27955 * 3 2 1 5 5 C 1.48501 * 126.28264 * 179.74908 * 4 3 2 6 6 N 1.34044 * 126.66994 * 359.68470 * 5 4 3 7 7 N 1.28986 * 107.26704 * 179.86920 * 6 5 4 8 8 N 1.28731 * 108.94321 * 0.39977 * 7 6 5 9 9 H 0.96999 * 125.34170 * 179.77192 * 8 7 6 10 10 N 1.28878 * 109.31308 * 359.74507 * 8 7 6 11 11 C 1.40796 * 107.43896 * 359.72494 * 4 3 2 12 12 C 1.36700 * 107.05263 * 0.02562 * 11 4 3 13 13 C 1.46668 * 126.03015 * 180.02562 * 12 11 4 14 14 O 1.21698 * 120.00388 * 184.69841 * 13 12 11 15 15 N 1.34784 * 119.99943 * 4.69822 * 13 12 11 16 16 C 1.39351 * 120.00032 * 174.93922 * 15 13 12 17 17 C 1.38633 * 119.58290 * 174.71483 * 16 15 13 18 18 C 1.40799 * 118.79538 * 180.02562 * 17 16 15 19 19 C 1.41542 * 120.99572 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00112 * 205.16535 * 19 18 17 21 21 C 1.40028 * 120.00041 * 25.16392 * 19 18 17 22 22 N 1.30747 * 119.99887 * 10.45533 * 21 19 18 23 23 Si 1.86804 * 119.99998 * 190.44843 * 21 19 18 24 24 H 1.48495 * 109.46867 * 90.00315 * 23 21 19 25 25 H 1.48503 * 109.47148 * 210.00040 * 23 21 19 26 26 H 1.48502 * 109.47165 * 330.00394 * 23 21 19 27 27 C 1.41185 * 118.01028 * 0.02562 * 18 17 16 28 28 C 1.37588 * 119.02045 * 0.02562 * 27 18 17 29 29 N 1.32092 * 121.10956 * 359.97438 * 28 27 18 30 30 H 1.08996 * 109.47287 * 271.11841 * 1 2 3 31 31 H 1.09004 * 109.47105 * 31.11990 * 1 2 3 32 32 H 1.09004 * 109.46929 * 151.11352 * 1 2 3 33 33 H 1.07998 * 125.68882 * 0.02562 * 3 2 1 34 34 H 1.07995 * 126.47385 * 179.97438 * 11 4 3 35 35 H 0.96997 * 119.99851 * 354.94162 * 15 13 12 36 36 H 1.08000 * 120.60441 * 0.02627 * 17 16 15 37 37 H 0.96999 * 119.99777 * 179.97438 * 22 21 19 38 38 H 1.08000 * 120.49016 * 180.02562 * 27 18 17 39 39 H 1.07993 * 119.44206 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2486 1.0975 0.0000 4 6 3.5552 0.7002 -0.0063 5 6 4.7442 1.5898 -0.0138 6 7 4.7410 2.9302 -0.0215 7 7 5.9718 3.3160 -0.0233 8 7 6.7348 2.2791 -0.0256 9 1 7.7046 2.2961 -0.0304 10 7 6.0078 1.2150 -0.0198 11 6 3.5682 -0.7077 -0.0039 12 6 2.2650 -1.1206 0.0032 13 6 1.8008 -2.5119 0.0085 14 8 0.6115 -2.7569 -0.0716 15 7 2.6915 -3.5191 0.1020 16 6 2.2463 -4.8349 0.2133 17 6 3.1659 -5.8722 0.1982 18 6 2.6977 -7.1953 0.3112 19 6 3.5955 -8.2895 0.3005 20 1 3.2550 -9.2643 -0.0162 21 6 4.9251 -8.1083 0.7007 22 7 5.2885 -6.9911 1.2745 23 14 6.1794 -9.4627 0.4147 24 1 6.8147 -9.2763 -0.9145 25 1 7.2197 -9.4054 1.4730 26 1 5.5010 -10.7829 0.4584 27 6 1.3059 -7.3979 0.4344 28 6 0.4701 -6.3050 0.4385 29 7 0.9494 -5.0788 0.3301 30 1 -0.3633 0.0201 1.0274 31 1 -0.3633 0.8798 -0.5311 32 1 -0.3633 -0.8998 -0.4965 33 1 1.9009 2.1199 0.0004 34 1 4.4424 -1.3417 -0.0079 35 1 3.6425 -3.3281 0.0919 36 1 4.2222 -5.6692 0.1015 37 1 6.2095 -6.8657 1.5520 38 1 0.9033 -8.3960 0.5240 39 1 -0.5956 -6.4521 0.5320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822645906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:34 Heat of formation + Delta-G solvation = 182.048838 kcal Electronic energy + Delta-G solvation = -27406.822638 eV Core-core repulsion = 23353.868410 eV Total energy + Delta-G solvation = -4052.954228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.46734 -41.58707 -39.31254 -37.61311 -34.69267 -34.38059 -33.99544 -33.68062 -32.17872 -30.60744 -29.93233 -28.18843 -26.91966 -26.03189 -24.74672 -23.86250 -23.02566 -21.97049 -20.89744 -20.37721 -19.61183 -18.77553 -17.79730 -17.58746 -17.17572 -15.99763 -15.66627 -15.62371 -15.20900 -14.71534 -14.30342 -14.21997 -14.14625 -13.93985 -13.81707 -13.33873 -12.87723 -12.78744 -12.66336 -12.61528 -12.30971 -12.26830 -12.11435 -11.45066 -11.42725 -11.23209 -11.15478 -11.01598 -10.93869 -10.31546 -10.15900 -9.82156 -9.55304 -9.42458 -8.75971 -8.29422 -8.02657 -7.80091 -7.07746 -6.77645 -4.65623 0.96447 1.45912 1.59840 2.15279 2.58594 2.67373 2.77688 3.00816 3.03997 3.04758 3.22760 3.55108 3.78786 3.83577 3.87781 4.14493 4.66915 4.78668 4.86810 4.92104 5.20637 5.23785 5.32852 5.46069 5.62902 5.64558 5.79083 5.87821 6.07096 6.29543 6.43543 6.53188 6.62782 6.75842 6.78977 6.92339 7.00225 7.10402 7.33882 7.42233 7.73293 7.90847 8.11473 8.15551 8.37812 8.65440 8.72564 8.79166 9.62836 10.06447 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.002887 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.271248 B = 9694.769625 C =12083.185432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.401 5.401 3 C 0.071 3.929 4 C -0.120 4.120 5 C 0.266 3.734 6 N -0.281 5.281 7 N -0.057 5.057 8 N -0.232 5.232 9 H 0.474 0.526 10 N -0.298 5.298 11 C -0.105 4.105 12 C -0.034 4.034 13 C 0.574 3.426 14 O -0.488 6.488 15 N -0.642 5.642 16 C 0.336 3.664 17 C -0.237 4.237 18 C 0.141 3.859 19 C -0.452 4.452 20 H 0.082 0.918 21 C 0.075 3.925 22 N -0.792 5.792 23 Si 0.915 3.085 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.281 4.281 28 C 0.118 3.882 29 N -0.554 5.554 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.181 0.819 34 H 0.154 0.846 35 H 0.411 0.589 36 H 0.136 0.864 37 H 0.282 0.718 38 H 0.102 0.898 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.412 15.778 -2.008 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.073 5.073 3 C -0.070 4.070 4 C -0.130 4.130 5 C -0.014 4.014 6 N -0.154 5.154 7 N -0.052 5.052 8 N -0.078 5.078 9 H 0.327 0.673 10 N -0.150 5.150 11 C -0.131 4.131 12 C -0.146 4.146 13 C 0.360 3.640 14 O -0.361 6.361 15 N -0.288 5.288 16 C 0.112 3.888 17 C -0.262 4.262 18 C 0.132 3.868 19 C -0.483 4.483 20 H 0.100 0.900 21 C -0.143 4.143 22 N -0.418 5.418 23 Si 0.739 3.261 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.305 4.305 28 C -0.037 4.037 29 N -0.273 5.273 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.199 0.801 34 H 0.172 0.828 35 H 0.247 0.753 36 H 0.153 0.847 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.048 17.019 -1.946 17.162 hybrid contribution 2.269 -1.498 0.050 2.719 sum 3.316 15.521 -1.896 15.985 Atomic orbital electron populations 1.22441 0.75099 1.05964 1.04417 1.43680 1.07417 1.04592 1.51571 1.21806 0.89114 0.92105 1.04023 1.16232 0.87612 0.91115 1.18065 1.22825 0.90206 0.88738 0.99598 1.76043 1.10133 1.10263 1.18977 1.78842 0.96407 1.14889 1.15084 1.47696 1.12685 1.00856 1.46542 0.67261 1.75006 1.03759 1.13244 1.22955 1.21085 0.95347 0.93372 1.03337 1.19989 0.89755 0.88358 1.16521 1.16969 0.86313 0.82729 0.78020 1.90844 1.15137 1.83879 1.46249 1.43028 1.09777 1.04425 1.71542 1.18107 0.90524 0.82474 0.97694 1.21706 0.99621 0.91585 1.13281 1.17589 0.91170 0.92308 0.85703 1.19598 0.93567 0.96359 1.38821 0.90012 1.25960 0.99393 0.96721 0.92251 1.69733 1.19267 1.25027 1.27821 0.86194 0.79580 0.81331 0.78949 1.19210 1.20184 1.18548 1.21923 0.94889 0.98243 1.15470 1.21739 0.98066 0.87467 0.96386 1.67165 1.12901 1.23619 1.23651 0.90174 0.89708 0.86901 0.80142 0.82840 0.75292 0.84690 0.90718 0.87937 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 10.63 59.85 0.64 1.26 16 2 N -0.40 -5.05 3.14 -120.43 -0.38 -5.43 16 3 C 0.07 0.80 11.32 -16.83 -0.19 0.60 16 4 C -0.12 -1.53 6.10 -105.30 -0.64 -2.17 16 5 C 0.27 3.37 8.17 -156.30 -1.28 2.10 16 6 N -0.28 -3.52 12.53 32.16 0.40 -3.11 16 7 N -0.06 -0.61 13.47 60.35 0.81 0.20 16 8 N -0.23 -1.98 7.90 60.35 0.48 -1.51 16 9 H 0.47 1.75 8.96 -340.37 -3.05 -1.30 16 10 N -0.30 -3.44 12.40 32.18 0.40 -3.04 16 11 C -0.10 -1.42 10.28 -39.17 -0.40 -1.82 16 12 C -0.03 -0.51 6.83 -82.39 -0.56 -1.07 16 13 C 0.57 10.82 7.73 -12.85 -0.10 10.72 16 14 O -0.49 -10.53 12.86 5.19 0.07 -10.46 16 15 N -0.64 -12.57 5.37 -12.69 -0.07 -12.64 16 16 C 0.34 7.99 7.40 -154.79 -1.15 6.85 16 17 C -0.24 -5.88 8.62 -38.47 -0.33 -6.21 16 18 C 0.14 3.63 5.61 -106.55 -0.60 3.03 16 19 C -0.45 -11.39 9.14 -37.65 -0.34 -11.74 16 20 H 0.08 1.97 7.87 -52.48 -0.41 1.56 16 21 C 0.08 1.78 5.31 -17.34 -0.09 1.68 16 22 N -0.79 -19.09 10.66 55.55 0.59 -18.50 16 23 Si 0.92 17.67 29.57 -169.99 -5.03 12.65 16 24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 25 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 27 C -0.28 -6.75 9.90 -38.70 -0.38 -7.14 16 28 C 0.12 2.75 11.15 -17.68 -0.20 2.56 16 29 N -0.55 -13.75 7.88 -12.54 -0.10 -13.85 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 1.44 6.14 -51.93 -0.32 1.12 16 33 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.15 1.88 7.41 -52.49 -0.39 1.49 16 35 H 0.41 6.79 7.55 -40.82 -0.31 6.48 16 36 H 0.14 3.34 6.05 -52.49 -0.32 3.02 16 37 H 0.28 6.15 8.29 -40.82 -0.34 5.82 16 38 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 348.01 15.07 5.24 5.24 Total: -1.00 -33.07 348.01 -9.25 -42.33 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.05 Total: 9.47 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -5.63 Total: -1.35 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 2.14 Total: -57.88 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.07 -9.25 -42.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822645906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.375 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds