Wall clock time and date at job start Tue Mar 31 2020 22:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34854 * 125.52881 * 2 1 4 4 C 1.36569 * 108.61571 * 180.27955 * 3 2 1 5 5 C 1.48501 * 126.28264 * 179.74908 * 4 3 2 6 6 N 1.34044 * 126.66994 * 359.68470 * 5 4 3 7 7 N 1.28986 * 107.26704 * 179.86920 * 6 5 4 8 8 N 1.28731 * 108.94321 * 0.39977 * 7 6 5 9 9 H 0.96999 * 125.34170 * 179.77192 * 8 7 6 10 10 N 1.28878 * 109.31308 * 359.74507 * 8 7 6 11 11 C 1.40796 * 107.43896 * 359.72494 * 4 3 2 12 12 C 1.36700 * 107.05263 * 0.02562 * 11 4 3 13 13 C 1.46668 * 126.03015 * 180.02562 * 12 11 4 14 14 O 1.21698 * 120.00388 * 184.69841 * 13 12 11 15 15 N 1.34784 * 119.99943 * 4.69822 * 13 12 11 16 16 C 1.39351 * 120.00032 * 174.93922 * 15 13 12 17 17 C 1.38633 * 119.58290 * 174.71483 * 16 15 13 18 18 C 1.40799 * 118.79538 * 180.02562 * 17 16 15 19 19 C 1.41542 * 120.99572 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00112 * 205.16535 * 19 18 17 21 21 C 1.40028 * 120.00041 * 25.16392 * 19 18 17 22 22 N 1.30747 * 119.99887 * 10.45533 * 21 19 18 23 23 Si 1.86804 * 119.99998 * 190.44843 * 21 19 18 24 24 H 1.48495 * 109.46867 * 90.00315 * 23 21 19 25 25 H 1.48503 * 109.47148 * 210.00040 * 23 21 19 26 26 H 1.48502 * 109.47165 * 330.00394 * 23 21 19 27 27 C 1.41185 * 118.01028 * 0.02562 * 18 17 16 28 28 C 1.37588 * 119.02045 * 0.02562 * 27 18 17 29 29 N 1.32092 * 121.10956 * 359.97438 * 28 27 18 30 30 H 1.08996 * 109.47287 * 271.11841 * 1 2 3 31 31 H 1.09004 * 109.47105 * 31.11990 * 1 2 3 32 32 H 1.09004 * 109.46929 * 151.11352 * 1 2 3 33 33 H 1.07998 * 125.68882 * 0.02562 * 3 2 1 34 34 H 1.07995 * 126.47385 * 179.97438 * 11 4 3 35 35 H 0.96997 * 119.99851 * 354.94162 * 15 13 12 36 36 H 1.08000 * 120.60441 * 0.02627 * 17 16 15 37 37 H 0.96999 * 119.99777 * 179.97438 * 22 21 19 38 38 H 1.08000 * 120.49016 * 180.02562 * 27 18 17 39 39 H 1.07993 * 119.44206 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2486 1.0975 0.0000 4 6 3.5552 0.7002 -0.0063 5 6 4.7442 1.5898 -0.0138 6 7 4.7410 2.9302 -0.0215 7 7 5.9718 3.3160 -0.0233 8 7 6.7348 2.2791 -0.0256 9 1 7.7046 2.2961 -0.0304 10 7 6.0078 1.2150 -0.0198 11 6 3.5682 -0.7077 -0.0039 12 6 2.2650 -1.1206 0.0032 13 6 1.8008 -2.5119 0.0085 14 8 0.6115 -2.7569 -0.0716 15 7 2.6915 -3.5191 0.1020 16 6 2.2463 -4.8349 0.2133 17 6 3.1659 -5.8722 0.1982 18 6 2.6977 -7.1953 0.3112 19 6 3.5955 -8.2895 0.3005 20 1 3.2550 -9.2643 -0.0162 21 6 4.9251 -8.1083 0.7007 22 7 5.2885 -6.9911 1.2745 23 14 6.1794 -9.4627 0.4147 24 1 6.8147 -9.2763 -0.9145 25 1 7.2197 -9.4054 1.4730 26 1 5.5010 -10.7829 0.4584 27 6 1.3059 -7.3979 0.4344 28 6 0.4701 -6.3050 0.4385 29 7 0.9494 -5.0788 0.3301 30 1 -0.3633 0.0201 1.0274 31 1 -0.3633 0.8798 -0.5311 32 1 -0.3633 -0.8998 -0.4965 33 1 1.9009 2.1199 0.0004 34 1 4.4424 -1.3417 -0.0079 35 1 3.6425 -3.3281 0.0919 36 1 4.2222 -5.6692 0.1015 37 1 6.2095 -6.8657 1.5520 38 1 0.9033 -8.3960 0.5240 39 1 -0.5956 -6.4521 0.5320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822645906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:33 Heat of formation + Delta-G solvation = 160.483064 kcal Electronic energy + Delta-G solvation = -27407.757800 eV Core-core repulsion = 23353.868410 eV Total energy + Delta-G solvation = -4053.889390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.31278 -42.64729 -40.93829 -39.28734 -36.19572 -35.66294 -35.34890 -34.73351 -33.14655 -32.44474 -31.27789 -29.70227 -27.90584 -27.79993 -25.68384 -24.84935 -24.31222 -23.80051 -22.39788 -21.38133 -20.84977 -19.89586 -19.40457 -18.80654 -18.01583 -17.57758 -17.17824 -16.75920 -16.75217 -16.03514 -15.75471 -15.72110 -15.57503 -15.28902 -14.81897 -14.62596 -14.46008 -14.33665 -14.14239 -13.68192 -13.45790 -13.19508 -13.14498 -13.01871 -12.87135 -12.68949 -12.28243 -12.08281 -12.02932 -11.89856 -11.87576 -11.52346 -11.19206 -11.09545 -9.93181 -9.76767 -9.63770 -9.31596 -8.85329 -8.56759 -6.56569 0.13345 0.29235 0.61170 0.96101 1.01760 1.42377 1.42913 1.55295 1.59142 1.63016 2.03936 2.21476 2.25988 2.39167 2.85314 2.91021 3.23688 3.58556 3.76097 3.97997 4.06633 4.21213 4.25306 4.43695 4.44204 4.56857 4.74258 4.77772 4.82089 4.85533 4.92742 5.06622 5.10070 5.26112 5.44455 5.49097 5.63234 5.70165 5.75026 5.94248 6.08054 6.15370 6.45629 6.56940 6.80383 6.85248 7.20562 7.25724 7.80756 8.29819 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.002887 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.271248 B = 9694.769625 C =12083.185432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.402 5.402 3 C 0.100 3.900 4 C -0.137 4.137 5 C 0.256 3.744 6 N -0.296 5.296 7 N -0.059 5.059 8 N -0.206 5.206 9 H 0.492 0.508 10 N -0.309 5.309 11 C -0.093 4.093 12 C -0.064 4.064 13 C 0.574 3.426 14 O -0.521 6.521 15 N -0.640 5.640 16 C 0.335 3.665 17 C -0.255 4.255 18 C 0.111 3.889 19 C -0.481 4.481 20 H 0.084 0.916 21 C 0.037 3.963 22 N -0.815 5.815 23 Si 0.989 3.011 24 H -0.261 1.261 25 H -0.267 1.267 26 H -0.259 1.259 27 C -0.295 4.295 28 C 0.113 3.887 29 N -0.576 5.576 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.217 0.783 34 H 0.160 0.840 35 H 0.422 0.578 36 H 0.131 0.869 37 H 0.292 0.708 38 H 0.117 0.883 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 17.180 -2.067 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.073 5.073 3 C -0.043 4.043 4 C -0.147 4.147 5 C -0.024 4.024 6 N -0.169 5.169 7 N -0.054 5.054 8 N -0.056 5.056 9 H 0.351 0.649 10 N -0.162 5.162 11 C -0.120 4.120 12 C -0.176 4.176 13 C 0.362 3.638 14 O -0.396 6.396 15 N -0.287 5.287 16 C 0.110 3.890 17 C -0.281 4.281 18 C 0.103 3.897 19 C -0.512 4.512 20 H 0.102 0.898 21 C -0.180 4.180 22 N -0.441 5.441 23 Si 0.810 3.190 24 H -0.186 1.186 25 H -0.192 1.192 26 H -0.183 1.183 27 C -0.319 4.319 28 C -0.040 4.040 29 N -0.296 5.296 30 H 0.105 0.895 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.234 0.766 34 H 0.177 0.823 35 H 0.260 0.740 36 H 0.148 0.852 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.199 18.453 -2.004 18.691 hybrid contribution 1.968 -1.796 0.084 2.666 sum 4.167 16.656 -1.920 17.277 Atomic orbital electron populations 1.22565 0.73844 1.06473 1.05148 1.43872 1.08238 1.04102 1.51053 1.22366 0.88372 0.92908 1.00648 1.16340 0.88580 0.90669 1.19065 1.22812 0.90411 0.88903 1.00295 1.76018 1.10903 1.10122 1.19829 1.78786 0.96258 1.15176 1.15156 1.47735 1.13532 0.99791 1.44563 0.64946 1.74967 1.03797 1.14195 1.23212 1.21214 0.94924 0.94211 1.01657 1.19434 0.90744 0.87151 1.20272 1.17418 0.85718 0.83934 0.76708 1.90819 1.16406 1.84666 1.47745 1.43017 1.10705 1.03377 1.71555 1.18318 0.90200 0.83987 0.96515 1.21679 0.99536 0.91922 1.14928 1.18024 0.92314 0.93091 0.86251 1.19879 0.94869 0.96404 1.40030 0.89836 1.26814 1.00667 0.99175 0.91320 1.69774 1.20273 1.26545 1.27462 0.85084 0.76805 0.78037 0.79091 1.18568 1.19195 1.18327 1.22109 0.94552 0.99197 1.16053 1.22219 0.99457 0.87060 0.95303 1.67299 1.13371 1.24257 1.24624 0.89489 0.85639 0.89741 0.76596 0.82294 0.73975 0.85184 0.89746 0.86537 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.13 10.63 127.77 1.36 2.49 16 2 N -0.40 -9.50 3.14 -534.94 -1.68 -11.18 16 3 C 0.10 1.97 11.32 83.84 0.95 2.91 16 4 C -0.14 -3.25 6.10 -20.30 -0.12 -3.37 16 5 C 0.26 6.00 8.17 137.40 1.12 7.12 16 6 N -0.30 -6.79 12.53 -52.16 -0.65 -7.44 16 7 N -0.06 -1.14 13.47 37.02 0.50 -0.64 16 8 N -0.21 -3.09 7.90 37.02 0.29 -2.79 16 9 H 0.49 2.52 8.96 -347.54 -3.12 -0.60 16 10 N -0.31 -6.60 12.40 -52.11 -0.65 -7.24 16 11 C -0.09 -2.45 10.28 22.54 0.23 -2.22 16 12 C -0.06 -1.92 6.83 40.07 0.27 -1.64 16 13 C 0.57 22.14 7.73 86.44 0.67 22.81 16 14 O -0.52 -23.14 12.86 -4.34 -0.06 -23.20 16 15 N -0.64 -25.82 5.37 -312.26 -1.68 -27.49 16 16 C 0.34 16.44 7.40 132.80 0.98 17.42 16 17 C -0.26 -13.12 8.62 22.99 0.20 -12.92 16 18 C 0.11 5.92 5.61 -21.11 -0.12 5.80 16 19 C -0.48 -24.69 9.14 23.52 0.21 -24.48 16 20 H 0.08 4.10 7.87 -2.91 -0.02 4.08 16 21 C 0.04 1.74 5.31 85.29 0.45 2.19 16 22 N -0.81 -39.53 10.66 21.84 0.23 -39.30 16 23 Si 0.99 35.73 29.57 68.60 2.03 37.76 16 24 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 25 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 26 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 27 C -0.30 -14.49 9.90 22.84 0.23 -14.27 16 28 C 0.11 5.39 11.15 84.50 0.94 6.33 16 29 N -0.58 -29.25 7.88 -193.59 -1.53 -30.78 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.08 2.17 6.14 -2.38 -0.01 2.15 16 33 H 0.22 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.16 3.85 7.41 -2.91 -0.02 3.83 16 35 H 0.42 14.42 7.55 -92.71 -0.70 13.72 16 36 H 0.13 6.67 6.05 -2.91 -0.02 6.66 16 37 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 38 H 0.12 5.20 8.06 -2.91 -0.02 5.18 16 39 H 0.15 6.11 8.06 -2.91 -0.02 6.09 16 Total: -1.00 -72.68 348.01 1.54 -71.14 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -2.65 Total: 32.98 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 7.38 Total: 8.18 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -5.16 Total: -126.87 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Total: -72.68 1.54 -71.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822645906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.624 kcal (2) G-P(sol) polarization free energy of solvation -72.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds