Wall clock time and date at job start Tue Mar 31 2020 22:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00221 * 2 1 4 4 H 1.48507 * 109.47003 * 272.54950 * 3 2 1 5 5 H 1.48498 * 109.47264 * 32.54723 * 3 2 1 6 6 H 1.48499 * 109.47446 * 152.55219 * 3 2 1 7 7 C 1.37879 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99877 * 354.69942 * 7 2 1 9 9 C 1.50703 * 120.00368 * 174.70221 * 7 2 1 10 10 C 1.53005 * 115.54876 * 88.54343 * 9 7 2 11 11 S 1.81400 * 109.47076 * 65.27477 * 10 9 7 12 12 O 1.42103 * 110.54381 * 62.24527 * 11 10 9 13 13 O 1.42098 * 110.54366 * 285.49990 * 11 10 9 14 14 N 1.65594 * 104.44956 * 173.87232 * 11 10 9 15 15 C 1.46502 * 119.99881 * 65.00186 * 14 11 10 16 16 C 1.53009 * 109.46961 * 164.99824 * 15 14 11 17 17 C 1.52998 * 109.46476 * 179.97438 * 16 15 14 18 18 H 1.09001 * 109.47562 * 305.00104 * 17 16 15 19 19 O 1.42904 * 109.47254 * 65.00746 * 17 16 15 20 20 C 1.50705 * 109.46785 * 185.00058 * 17 16 15 21 21 C 1.38234 * 119.99904 * 279.73447 * 20 17 16 22 22 C 1.38236 * 119.99987 * 179.78962 * 21 20 17 23 23 C 1.38237 * 119.99852 * 0.43438 * 22 21 20 24 24 C 1.38234 * 120.00086 * 359.81435 * 23 22 21 25 25 C 1.38235 * 119.99977 * 99.99735 * 20 17 16 26 26 C 1.52991 * 117.49829 * 234.21707 * 9 7 2 27 27 C 1.53000 * 117.49686 * 302.87808 * 9 7 2 28 28 H 0.97004 * 119.99628 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47121 * 305.27542 * 10 9 7 30 30 H 1.08999 * 109.46647 * 185.27338 * 10 9 7 31 31 H 0.96996 * 120.00112 * 244.99626 * 14 11 10 32 32 H 1.09001 * 109.46969 * 44.99979 * 15 14 11 33 33 H 1.08995 * 109.47087 * 284.99484 * 15 14 11 34 34 H 1.08999 * 109.46713 * 59.99970 * 16 15 14 35 35 H 1.08995 * 109.46942 * 299.99748 * 16 15 14 36 36 H 0.96700 * 114.00259 * 59.98837 * 19 17 16 37 37 H 1.07998 * 120.00314 * 359.97438 * 21 20 17 38 38 H 1.07996 * 120.00150 * 180.26982 * 22 21 20 39 39 H 1.08003 * 119.99924 * 179.84091 * 23 22 21 40 40 H 1.08003 * 120.00291 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.99651 * 359.97438 * 25 20 17 42 42 H 1.09005 * 117.49951 * 215.00245 * 26 9 7 43 43 H 1.08996 * 117.50315 * 0.02562 * 26 9 7 44 44 H 1.08997 * 117.49725 * 359.97195 * 27 9 7 45 45 H 1.09002 * 117.49797 * 144.97513 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4428 2.0775 -1.3988 5 1 1.4747 2.6365 0.7532 6 1 3.5727 1.4252 0.6453 7 6 2.0046 -1.1940 0.0005 8 1 1.4680 -2.1273 0.0874 9 6 3.5068 -1.1969 -0.1200 10 6 4.2748 -1.0988 1.1997 11 16 3.9656 -2.5860 2.1913 12 8 4.4403 -3.7430 1.5163 13 8 2.6605 -2.5490 2.7521 14 7 4.9749 -2.4307 3.4949 15 6 4.7727 -1.3402 4.4520 16 6 5.5677 -1.6270 5.7274 17 6 5.3569 -0.4878 6.7267 18 1 5.6168 0.4607 6.2566 19 8 3.9874 -0.4583 7.1336 20 6 6.2344 -0.7081 7.9320 21 6 5.8432 -1.5932 8.9191 22 6 6.6501 -1.7985 10.0226 23 6 7.8439 -1.1120 10.1433 24 6 8.2326 -0.2230 9.1586 25 6 7.4277 -0.0209 8.0530 26 6 4.1243 -2.0423 -1.2356 27 6 4.1184 -0.5155 -1.3457 28 1 -0.4850 0.8401 -0.0004 29 1 3.9407 -0.2193 1.7500 30 1 5.3418 -1.0149 0.9936 31 1 5.6999 -3.0618 3.6248 32 1 3.7129 -1.2615 4.6944 33 1 5.1156 -0.4033 4.0131 34 1 6.6275 -1.7058 5.4849 35 1 5.2248 -2.5639 6.1663 36 1 3.6864 -1.2720 7.5607 37 1 4.9087 -2.1266 8.8268 38 1 6.3467 -2.4933 10.7917 39 1 8.4731 -1.2705 11.0067 40 1 9.1654 0.3131 9.2527 41 1 7.7314 0.6734 7.2836 42 1 5.0778 -2.5286 -1.0296 43 1 3.4442 -2.5960 -1.8828 44 1 3.4343 -0.0655 -2.0651 45 1 5.0679 0.0030 -1.2119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830733069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:16 Heat of formation + Delta-G solvation = -76.006600 kcal Electronic energy + Delta-G solvation = -27168.843543 eV Core-core repulsion = 23279.097984 eV Total energy + Delta-G solvation = -3889.745559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.03142 -37.60721 -37.12811 -36.34548 -35.37706 -35.06545 -32.23884 -32.15282 -31.22146 -29.94423 -28.50910 -25.55286 -25.42651 -23.03116 -22.43177 -21.71897 -21.30547 -19.62160 -18.67702 -17.95587 -17.09752 -16.65666 -16.42545 -16.16002 -15.83925 -15.31552 -15.27750 -15.04251 -14.80612 -14.37017 -13.99821 -13.80934 -13.77809 -13.58644 -13.21724 -12.98787 -12.64985 -12.45278 -12.32752 -12.05241 -11.69480 -11.49598 -11.40518 -11.38042 -11.22208 -11.18228 -11.15181 -10.92839 -10.64961 -10.37128 -10.30562 -10.09586 -9.73843 -9.31693 -9.28465 -9.15655 -9.09066 -8.65419 -8.45612 -6.15936 -4.23451 0.90508 0.98881 1.03215 3.23204 3.29829 3.33047 3.35243 3.43066 4.14524 4.22794 4.35818 4.42198 4.46957 4.60830 4.72466 4.73031 4.78062 4.81883 4.89832 4.98640 5.08531 5.10571 5.19818 5.36168 5.38720 5.45849 5.58649 5.64902 5.70853 5.75808 5.86871 5.94345 6.03615 6.08121 6.13281 6.14655 6.19959 6.22617 6.42684 6.61445 6.65488 6.88192 7.06302 7.17422 7.36128 7.60326 8.37803 8.89477 9.45204 10.95592 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.002774 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.169696 B =10091.465523 C =10590.199598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.089 3.911 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.510 4.510 8 H 0.087 0.913 9 C 0.002 3.998 10 C -0.577 4.577 11 S 2.615 3.385 12 O -0.970 6.970 13 O -0.938 6.938 14 N -1.134 6.134 15 C 0.116 3.884 16 C -0.152 4.152 17 C 0.147 3.853 18 H 0.112 0.888 19 O -0.549 6.549 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.110 4.110 26 C -0.177 4.177 27 C -0.185 4.185 28 H 0.267 0.733 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.409 0.591 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.375 0.625 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.661 -0.375 17.696 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.181 1.181 7 C -0.547 4.547 8 H 0.105 0.895 9 C -0.001 4.001 10 C -0.709 4.709 11 S 2.710 3.290 12 O -0.960 6.960 13 O -0.928 6.928 14 N -0.891 5.891 15 C -0.011 4.011 16 C -0.191 4.191 17 C 0.087 3.913 18 H 0.130 0.870 19 O -0.355 6.355 20 C -0.113 4.113 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.128 4.128 26 C -0.214 4.214 27 C -0.224 4.224 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.241 0.759 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.224 0.776 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.736 -0.259 17.294 24.067 hybrid contribution 1.241 0.839 0.250 1.519 sum 17.977 0.580 17.544 25.126 Atomic orbital electron populations 1.69895 1.06412 1.27336 1.48079 1.24950 0.94534 0.98977 0.93158 0.86920 0.80731 0.83508 0.78679 1.20171 1.21626 1.18127 1.20342 0.85950 0.95532 1.52843 0.89522 1.18851 0.94897 1.02565 0.83783 1.30302 1.07144 1.20759 1.12662 1.04928 0.73811 0.76602 0.73626 1.93517 1.81516 1.46182 1.74802 1.93583 1.36649 1.86788 1.75774 1.56012 1.50322 1.40617 1.42169 1.21234 1.02099 0.89040 0.88697 1.22483 1.01629 0.99335 0.95664 1.20833 0.80807 0.99545 0.90134 0.87048 1.86683 1.25231 1.42705 1.80849 1.20596 0.96308 0.97287 0.97121 1.20924 0.99802 0.98076 0.94198 1.21143 0.94771 0.99701 0.97909 1.21192 0.96845 0.96934 0.99082 1.21168 0.99734 0.98499 0.94281 1.21037 0.94165 0.99424 0.98211 1.23023 1.01472 0.92835 1.04097 1.22986 1.01106 0.95249 1.03061 0.92272 0.85598 0.87522 0.75859 0.89123 0.91950 0.90138 0.90437 0.77644 0.86028 0.85929 0.86094 0.85951 0.85772 0.90033 0.88630 0.88914 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.81 13.96 55.43 0.77 -26.04 16 2 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 3 Si 0.87 21.02 24.96 -169.99 -4.24 16.78 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -5.63 5.68 56.52 0.32 -5.31 16 7 C -0.51 -14.27 8.77 -34.44 -0.30 -14.57 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 C 0.00 0.04 0.79 -155.66 -0.12 -0.08 16 10 C -0.58 -11.14 5.55 37.16 0.21 -10.94 16 11 S 2.62 50.44 5.19 -107.50 -0.56 49.88 16 12 O -0.97 -20.43 18.08 -57.54 -1.04 -21.47 16 13 O -0.94 -22.17 17.16 -57.54 -0.99 -23.16 16 14 N -1.13 -15.40 5.89 -10.61 -0.06 -15.46 16 15 C 0.12 1.40 6.03 -4.04 -0.02 1.38 16 16 C -0.15 -1.35 5.01 -26.73 -0.13 -1.49 16 17 C 0.15 1.31 3.21 -27.88 -0.09 1.22 16 18 H 0.11 0.95 8.00 -51.93 -0.42 0.53 16 19 O -0.55 -5.72 12.72 -35.23 -0.45 -6.17 16 20 C -0.11 -0.95 4.97 -104.62 -0.52 -1.47 16 21 C -0.11 -0.88 9.32 -39.58 -0.37 -1.25 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 25 C -0.11 -0.87 9.67 -39.58 -0.38 -1.26 16 26 C -0.18 -3.65 9.96 -26.70 -0.27 -3.92 16 27 C -0.19 -3.84 7.67 -26.69 -0.20 -4.04 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.13 2.40 6.53 -51.93 -0.34 2.06 16 30 H 0.11 1.65 8.09 -51.92 -0.42 1.23 16 31 H 0.41 4.51 8.62 -34.46 -0.30 4.22 16 32 H 0.09 1.27 7.38 -51.93 -0.38 0.89 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.38 2.76 7.50 45.56 0.34 3.10 16 37 H 0.12 0.75 6.78 -52.49 -0.36 0.39 16 38 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.12 0.79 8.04 -52.49 -0.42 0.37 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 44 H 0.09 2.00 7.34 -51.93 -0.38 1.62 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -36.43 382.08 -10.42 -46.85 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.12 Total: 10.81 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: -3.50 Total: -37.78 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.71 Total: -41.49 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -2.48 Total: -50.80 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.24 Total: 16.78 kcal Atomic # 16 Polarization: 50.44 SS G_CDS: -0.56 Total: 49.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.43 -10.42 -46.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830733069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.157 kcal (2) G-P(sol) polarization free energy of solvation -36.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds