Wall clock time and date at job start Tue Mar 31 2020 22:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00221 * 2 1 4 4 H 1.48507 * 109.47003 * 272.54950 * 3 2 1 5 5 H 1.48498 * 109.47264 * 32.54723 * 3 2 1 6 6 H 1.48499 * 109.47446 * 152.55219 * 3 2 1 7 7 C 1.37879 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99877 * 354.69942 * 7 2 1 9 9 C 1.50703 * 120.00368 * 174.70221 * 7 2 1 10 10 C 1.53005 * 115.54876 * 88.54343 * 9 7 2 11 11 S 1.81400 * 109.47076 * 65.27477 * 10 9 7 12 12 O 1.42103 * 110.54381 * 62.24527 * 11 10 9 13 13 O 1.42098 * 110.54366 * 285.49990 * 11 10 9 14 14 N 1.65594 * 104.44956 * 173.87232 * 11 10 9 15 15 C 1.46502 * 119.99881 * 65.00186 * 14 11 10 16 16 C 1.53009 * 109.46961 * 164.99824 * 15 14 11 17 17 C 1.52998 * 109.46476 * 179.97438 * 16 15 14 18 18 H 1.09001 * 109.47562 * 305.00104 * 17 16 15 19 19 O 1.42904 * 109.47254 * 65.00746 * 17 16 15 20 20 C 1.50705 * 109.46785 * 185.00058 * 17 16 15 21 21 C 1.38234 * 119.99904 * 279.73447 * 20 17 16 22 22 C 1.38236 * 119.99987 * 179.78962 * 21 20 17 23 23 C 1.38237 * 119.99852 * 0.43438 * 22 21 20 24 24 C 1.38234 * 120.00086 * 359.81435 * 23 22 21 25 25 C 1.38235 * 119.99977 * 99.99735 * 20 17 16 26 26 C 1.52991 * 117.49829 * 234.21707 * 9 7 2 27 27 C 1.53000 * 117.49686 * 302.87808 * 9 7 2 28 28 H 0.97004 * 119.99628 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47121 * 305.27542 * 10 9 7 30 30 H 1.08999 * 109.46647 * 185.27338 * 10 9 7 31 31 H 0.96996 * 120.00112 * 244.99626 * 14 11 10 32 32 H 1.09001 * 109.46969 * 44.99979 * 15 14 11 33 33 H 1.08995 * 109.47087 * 284.99484 * 15 14 11 34 34 H 1.08999 * 109.46713 * 59.99970 * 16 15 14 35 35 H 1.08995 * 109.46942 * 299.99748 * 16 15 14 36 36 H 0.96700 * 114.00259 * 59.98837 * 19 17 16 37 37 H 1.07998 * 120.00314 * 359.97438 * 21 20 17 38 38 H 1.07996 * 120.00150 * 180.26982 * 22 21 20 39 39 H 1.08003 * 119.99924 * 179.84091 * 23 22 21 40 40 H 1.08003 * 120.00291 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.99651 * 359.97438 * 25 20 17 42 42 H 1.09005 * 117.49951 * 215.00245 * 26 9 7 43 43 H 1.08996 * 117.50315 * 0.02562 * 26 9 7 44 44 H 1.08997 * 117.49725 * 359.97195 * 27 9 7 45 45 H 1.09002 * 117.49797 * 144.97513 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4428 2.0775 -1.3988 5 1 1.4747 2.6365 0.7532 6 1 3.5727 1.4252 0.6453 7 6 2.0046 -1.1940 0.0005 8 1 1.4680 -2.1273 0.0874 9 6 3.5068 -1.1969 -0.1200 10 6 4.2748 -1.0988 1.1997 11 16 3.9656 -2.5860 2.1913 12 8 4.4403 -3.7430 1.5163 13 8 2.6605 -2.5490 2.7521 14 7 4.9749 -2.4307 3.4949 15 6 4.7727 -1.3402 4.4520 16 6 5.5677 -1.6270 5.7274 17 6 5.3569 -0.4878 6.7267 18 1 5.6168 0.4607 6.2566 19 8 3.9874 -0.4583 7.1336 20 6 6.2344 -0.7081 7.9320 21 6 5.8432 -1.5932 8.9191 22 6 6.6501 -1.7985 10.0226 23 6 7.8439 -1.1120 10.1433 24 6 8.2326 -0.2230 9.1586 25 6 7.4277 -0.0209 8.0530 26 6 4.1243 -2.0423 -1.2356 27 6 4.1184 -0.5155 -1.3457 28 1 -0.4850 0.8401 -0.0004 29 1 3.9407 -0.2193 1.7500 30 1 5.3418 -1.0149 0.9936 31 1 5.6999 -3.0618 3.6248 32 1 3.7129 -1.2615 4.6944 33 1 5.1156 -0.4033 4.0131 34 1 6.6275 -1.7058 5.4849 35 1 5.2248 -2.5639 6.1663 36 1 3.6864 -1.2720 7.5607 37 1 4.9087 -2.1266 8.8268 38 1 6.3467 -2.4933 10.7917 39 1 8.4731 -1.2705 11.0067 40 1 9.1654 0.3131 9.2527 41 1 7.7314 0.6734 7.2836 42 1 5.0778 -2.5286 -1.0296 43 1 3.4442 -2.5960 -1.8828 44 1 3.4343 -0.0655 -2.0651 45 1 5.0679 0.0030 -1.2119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830733069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:15 Heat of formation + Delta-G solvation = -104.906312 kcal Electronic energy + Delta-G solvation = -27170.096728 eV Core-core repulsion = 23279.097984 eV Total energy + Delta-G solvation = -3890.998745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60620 -38.84282 -38.32144 -37.94198 -36.82791 -36.27158 -34.28895 -32.91186 -31.73398 -30.71880 -30.07805 -27.60561 -26.22434 -23.60337 -23.34509 -23.15412 -21.94855 -21.33229 -20.22642 -18.68327 -18.61513 -18.29690 -17.35978 -17.07654 -16.87080 -16.79498 -16.61125 -16.06940 -15.67364 -15.55122 -15.39639 -14.82210 -14.69854 -14.59115 -14.48891 -14.18715 -13.94017 -13.83233 -13.38889 -13.21683 -12.97526 -12.92784 -12.67842 -12.66496 -12.54419 -12.41011 -12.37983 -12.04172 -12.01244 -11.79188 -11.75206 -11.67931 -11.01035 -10.96234 -10.72217 -10.54570 -10.09726 -9.81469 -9.64701 -8.31758 -6.45052 -0.56210 0.41024 0.50645 1.36095 1.37965 1.51174 2.02045 2.36420 2.84337 2.88693 3.01216 3.16493 3.39724 3.53354 3.61759 3.76862 3.92761 3.98672 4.12875 4.13398 4.18102 4.25373 4.32772 4.34128 4.38305 4.51141 4.61155 4.62073 4.68080 4.74383 4.78570 4.86313 5.04207 5.06809 5.09433 5.17810 5.22066 5.23363 5.45853 5.56896 5.62577 5.63528 5.66756 6.11105 6.18986 6.20473 6.66568 6.75667 7.27680 8.84688 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.002774 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.169696 B =10091.465523 C =10590.199598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.212 1.212 7 C -0.514 4.514 8 H 0.027 0.973 9 C -0.033 4.033 10 C -0.572 4.572 11 S 2.620 3.380 12 O -0.994 6.994 13 O -0.997 6.997 14 N -1.112 6.112 15 C 0.105 3.895 16 C -0.142 4.142 17 C 0.149 3.851 18 H 0.116 0.884 19 O -0.571 6.571 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.174 4.174 27 C -0.168 4.168 28 H 0.268 0.732 29 H 0.132 0.868 30 H 0.160 0.840 31 H 0.424 0.576 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.385 0.615 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.172 1.265 18.444 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.175 4.175 3 Si 0.757 3.243 4 H -0.188 1.188 5 H -0.222 1.222 6 H -0.134 1.134 7 C -0.551 4.551 8 H 0.045 0.955 9 C -0.036 4.036 10 C -0.705 4.705 11 S 2.717 3.283 12 O -0.984 6.984 13 O -0.986 6.986 14 N -0.874 5.874 15 C -0.021 4.021 16 C -0.181 4.181 17 C 0.089 3.911 18 H 0.134 0.866 19 O -0.379 6.379 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.211 4.211 27 C -0.207 4.207 28 H 0.077 0.923 29 H 0.150 0.850 30 H 0.178 0.822 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.235 0.765 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 21.280 1.326 18.046 27.933 hybrid contribution -0.195 0.201 0.059 0.286 sum 21.085 1.527 18.105 27.833 Atomic orbital electron populations 1.70073 1.08827 1.28458 1.50715 1.25986 0.95303 1.03529 0.92691 0.85958 0.81121 0.77591 0.79677 1.18788 1.22227 1.13420 1.20470 0.89319 0.93303 1.52042 0.95473 1.18773 0.92259 1.06077 0.86455 1.30157 1.09825 1.20242 1.10239 1.04379 0.73199 0.76530 0.74186 1.93471 1.81602 1.47584 1.75780 1.93523 1.40488 1.87562 1.77073 1.55404 1.49753 1.41574 1.40672 1.21472 1.01411 0.89295 0.89873 1.22418 1.02190 0.99503 0.93963 1.20853 0.80194 0.99651 0.90381 0.86622 1.86645 1.26380 1.43739 1.81134 1.20593 0.96646 0.98016 0.97166 1.21160 1.00443 0.98321 0.94472 1.21418 0.94945 1.00098 0.98169 1.21512 0.96978 0.96597 0.99697 1.21465 1.00417 0.98587 0.94065 1.21287 0.94080 0.99629 0.98915 1.23104 1.02191 0.93495 1.02324 1.23095 1.02182 0.95169 1.00206 0.92284 0.85006 0.82204 0.73981 0.91739 0.89760 0.88061 0.90264 0.76536 0.85136 0.84492 0.84298 0.84151 0.84437 0.86827 0.90323 0.90322 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.28 13.96 21.45 0.30 -59.98 16 2 C 0.02 1.39 5.47 84.66 0.46 1.85 16 3 Si 0.93 42.22 24.96 68.60 1.71 43.93 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.21 -7.99 5.68 99.48 0.57 -7.43 16 7 C -0.51 -29.76 8.77 25.60 0.22 -29.54 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C -0.03 -1.46 0.79 -52.93 -0.04 -1.50 16 10 C -0.57 -20.14 5.55 71.98 0.40 -19.74 16 11 S 2.62 99.15 5.19 -56.49 -0.29 98.86 16 12 O -0.99 -41.15 18.08 -127.65 -2.31 -43.46 16 13 O -1.00 -49.02 17.16 -127.65 -2.19 -51.21 16 14 N -1.11 -27.74 5.89 -187.48 -1.10 -28.84 16 15 C 0.11 2.32 6.03 86.38 0.52 2.84 16 16 C -0.14 -2.18 5.01 30.60 0.15 -2.03 16 17 C 0.15 2.38 3.21 29.85 0.10 2.48 16 18 H 0.12 1.70 8.00 -2.39 -0.02 1.68 16 19 O -0.57 -11.54 12.72 -148.98 -1.90 -13.43 16 20 C -0.12 -1.88 4.97 -19.86 -0.10 -1.97 16 21 C -0.13 -1.82 9.32 22.27 0.21 -1.61 16 22 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 23 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 24 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 25 C -0.12 -1.65 9.67 22.27 0.22 -1.43 16 26 C -0.17 -6.78 9.96 30.62 0.30 -6.48 16 27 C -0.17 -6.28 7.67 30.62 0.23 -6.05 16 28 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.13 4.51 6.53 -2.39 -0.02 4.49 16 30 H 0.16 3.90 8.09 -2.39 -0.02 3.88 16 31 H 0.42 8.15 8.62 -96.75 -0.83 7.31 16 32 H 0.06 1.79 7.38 -2.39 -0.02 1.77 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.38 5.59 7.50 -74.06 -0.56 5.03 16 37 H 0.13 1.49 6.78 -2.91 -0.02 1.47 16 38 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 40 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.14 1.38 8.04 -2.91 -0.02 1.36 16 42 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 43 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.08 3.17 7.34 -2.39 -0.02 3.15 16 45 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -84.64 382.08 -2.95 -87.59 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: -0.52 Total: 33.86 kcal Atomic # 6 Polarization: -70.66 SS G_CDS: 3.35 Total: -67.31 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -0.80 Total: -88.83 kcal Atomic # 8 Polarization: -101.71 SS G_CDS: -6.39 Total: -108.11 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.71 Total: 43.93 kcal Atomic # 16 Polarization: 99.15 SS G_CDS: -0.29 Total: 98.86 kcal Total: -84.64 -2.95 -87.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830733069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.312 kcal (2) G-P(sol) polarization free energy of solvation -84.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds