Wall clock time and date at job start Tue Mar 31 2020 22:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46978 * 2 1 4 4 C 1.34727 * 116.99553 * 180.02562 * 3 2 1 5 5 O 1.21476 * 120.00190 * 359.97438 * 4 3 2 6 6 C 1.47646 * 119.99862 * 179.97438 * 4 3 2 7 7 C 1.40971 * 127.55518 * 359.68000 * 6 4 3 8 8 N 1.30671 * 107.55287 * 179.88420 * 7 6 4 9 9 N 1.28342 * 111.32996 * 0.40048 * 8 7 6 10 10 C 1.46493 * 124.94058 * 179.76837 * 9 8 7 11 11 C 1.35811 * 110.11649 * 359.74028 * 9 8 7 12 12 C 1.47353 * 126.94347 * 180.02562 * 11 9 8 13 13 O 1.21505 * 119.99692 * 179.97438 * 12 11 9 14 14 O 1.34784 * 120.00070 * 359.95750 * 12 11 9 15 15 C 1.45198 * 116.99722 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46951 * 179.97438 * 15 14 12 17 17 O 1.21285 * 119.99917 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00175 * 180.02562 * 16 15 14 19 19 C 1.46507 * 120.00009 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.46954 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99759 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99825 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00143 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47129 * 90.00242 * 24 22 20 26 26 H 1.48501 * 109.47037 * 210.00718 * 24 22 20 27 27 H 1.48499 * 109.47249 * 330.00290 * 24 22 20 28 28 H 1.08998 * 109.47020 * 300.00153 * 1 2 3 29 29 H 1.09006 * 109.46668 * 60.00004 * 1 2 3 30 30 H 1.08999 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47020 * 239.99847 * 2 1 3 32 32 H 1.08994 * 109.47099 * 119.99837 * 2 1 3 33 33 H 1.08001 * 126.21990 * 359.97438 * 7 6 4 34 34 H 1.09001 * 109.47427 * 269.96942 * 10 9 8 35 35 H 1.09002 * 109.47476 * 29.96929 * 10 9 8 36 36 H 1.09001 * 109.47298 * 149.96985 * 10 9 8 37 37 H 1.08995 * 109.47316 * 299.99662 * 15 14 12 38 38 H 1.09004 * 109.47425 * 60.00288 * 15 14 12 39 39 H 0.96997 * 120.00159 * 359.97438 * 18 16 15 40 40 H 1.08995 * 109.47177 * 300.00081 * 19 18 16 41 41 H 1.09004 * 109.46645 * 60.00144 * 19 18 16 42 42 H 0.96991 * 119.99957 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0896 0.5820 -0.0005 6 6 3.9140 2.9097 -0.0011 7 6 3.2098 4.1309 -0.0075 8 7 4.0921 5.0947 -0.0031 9 7 5.2891 4.6318 -0.0029 10 6 6.5048 5.4492 -0.0034 11 6 5.2648 3.2739 -0.0017 12 6 6.4264 2.3673 -0.0006 13 8 6.2578 1.1640 0.0010 14 8 7.6758 2.8728 -0.0017 15 6 8.7721 1.9207 -0.0011 16 6 10.0830 2.6641 -0.0031 17 8 10.0924 3.8769 -0.0053 18 7 11.2450 1.9812 -0.0034 19 6 12.5194 2.7039 -0.0060 20 6 13.6572 1.7158 -0.0052 21 1 13.4515 0.6555 -0.0027 22 6 14.9606 2.1653 -0.0067 23 7 15.9536 1.3030 -0.0066 24 14 15.3161 3.9991 -0.0104 25 1 15.4111 4.4877 1.3886 26 1 16.6002 4.2530 -0.7118 27 1 14.2196 4.7145 -0.7112 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1362 4.2485 -0.0133 34 1 6.8066 5.6510 -1.0312 35 1 6.3097 6.3909 0.5095 36 1 7.3028 4.9138 0.5111 37 1 8.7099 1.2955 0.8896 38 1 8.7092 1.2935 -0.8904 39 1 11.2375 1.0112 -0.0020 40 1 12.5809 3.3288 -0.8969 41 1 12.5829 3.3313 0.8831 42 1 16.8705 1.6192 -0.0080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845185708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:19 Heat of formation + Delta-G solvation = -114.957536 kcal Electronic energy + Delta-G solvation = -28677.088782 eV Core-core repulsion = 24239.360969 eV Total energy + Delta-G solvation = -4437.727813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.19905 -40.52523 -40.28169 -38.93089 -36.86587 -36.37536 -34.47624 -34.00853 -32.50455 -32.16860 -31.64101 -29.62714 -27.96391 -27.27535 -25.21064 -23.73659 -22.87648 -22.15897 -21.39552 -20.30555 -20.18196 -18.74759 -17.89603 -17.66059 -17.29337 -17.00648 -16.68751 -16.42506 -16.27735 -15.93698 -15.29328 -15.21610 -14.77914 -14.50810 -14.32096 -14.06221 -13.74801 -13.40690 -13.28983 -13.12233 -13.05440 -12.95416 -12.63696 -12.44827 -12.22390 -12.17197 -11.97794 -11.65617 -11.13132 -10.95915 -10.89080 -10.83484 -10.76809 -10.41431 -10.06094 -9.84079 -9.63026 -9.60883 -9.47675 -8.87740 -8.36665 -6.29012 -4.32620 0.27210 1.67425 1.70410 2.04379 2.31373 2.45774 2.89065 2.92617 3.20535 3.27676 3.34140 3.65056 4.00157 4.19415 4.25699 4.45807 4.55944 4.60680 4.65164 4.88062 4.91392 4.95036 4.99849 5.02518 5.04071 5.07445 5.11871 5.38586 5.41873 5.42514 5.60643 5.72344 5.93687 6.10034 6.20383 6.64438 6.93187 6.98643 7.24682 7.30076 7.44473 7.67310 7.96266 8.33662 8.57908 8.72140 9.29438 10.82746 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.002130 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.043314 B =13142.521318 C =14376.208407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.527 3.473 5 O -0.463 6.463 6 C -0.174 4.174 7 C 0.055 3.945 8 N -0.272 5.272 9 N -0.242 5.242 10 C 0.074 3.926 11 C 0.053 3.947 12 C 0.518 3.482 13 O -0.434 6.434 14 O -0.334 6.334 15 C 0.051 3.949 16 C 0.504 3.496 17 O -0.540 6.540 18 N -0.697 5.697 19 C 0.223 3.777 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.889 5.889 24 Si 0.877 3.123 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.261 1.261 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.205 0.795 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.400 0.600 40 H 0.028 0.972 41 H 0.024 0.976 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.726 2.881 0.052 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.273 6.273 4 C 0.368 3.632 5 O -0.347 6.347 6 C -0.187 4.187 7 C -0.121 4.121 8 N -0.104 5.104 9 N -0.029 5.029 10 C -0.064 4.064 11 C -0.078 4.078 12 C 0.356 3.644 13 O -0.315 6.315 14 O -0.250 6.250 15 C -0.026 4.026 16 C 0.287 3.713 17 O -0.418 6.418 18 N -0.347 5.347 19 C 0.101 3.899 20 C -0.586 4.586 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.526 5.526 24 Si 0.704 3.296 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.185 1.185 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.221 0.779 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.234 0.766 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -29.015 4.241 0.050 29.323 hybrid contribution 0.387 -0.709 -0.008 0.808 sum -28.627 3.533 0.042 28.845 Atomic orbital electron populations 1.21808 0.92530 1.03022 1.03533 1.23031 0.95207 0.79794 1.02876 1.86494 1.23409 1.32546 1.84892 1.19779 0.80824 0.88102 0.74506 1.91043 1.59508 1.41199 1.42978 1.19429 0.90407 0.93091 1.15775 1.23959 1.00339 0.86392 1.01425 1.73217 0.89485 1.27790 1.19876 1.45844 1.06952 1.03636 1.46510 1.22719 0.81249 0.96252 1.06217 1.20554 0.92638 0.84411 1.10180 1.19642 0.82076 0.86810 0.75838 1.91108 1.85299 1.13610 1.41509 1.86557 1.14019 1.40063 1.84358 1.22918 0.83459 0.90836 1.05430 1.19856 0.84769 0.88235 0.78396 1.90674 1.87484 1.13506 1.50168 1.46077 1.05772 1.10737 1.72114 1.19569 0.79781 0.93443 0.97090 1.21062 0.89348 0.94344 1.53840 0.90087 1.24793 0.95806 0.98190 0.93771 1.69872 0.99407 1.34372 1.48958 0.86811 0.78434 0.85316 0.79082 1.19791 1.20810 1.18516 0.91430 0.91437 0.90181 0.91080 0.91077 0.77870 0.88375 0.87704 0.86041 0.87837 0.87833 0.76571 0.95365 0.95827 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.54 10.12 -40.57 -0.41 -3.95 16 4 C 0.53 6.62 7.97 34.57 0.28 6.89 16 5 O -0.46 -7.26 13.30 -27.38 -0.36 -7.62 16 6 C -0.17 -2.05 6.28 -104.40 -0.66 -2.71 16 7 C 0.06 0.51 11.95 -17.01 -0.20 0.31 16 8 N -0.27 -2.85 11.85 30.83 0.37 -2.49 16 9 N -0.24 -2.65 3.72 -63.61 -0.24 -2.88 16 10 C 0.07 0.65 10.78 59.84 0.64 1.30 16 11 C 0.05 0.67 6.99 -81.78 -0.57 0.10 16 12 C 0.52 7.26 7.94 34.44 0.27 7.54 16 13 O -0.43 -7.07 13.29 -27.41 -0.36 -7.44 16 14 O -0.33 -4.59 7.18 -47.40 -0.34 -4.93 16 15 C 0.05 0.68 5.96 36.01 0.21 0.89 16 16 C 0.50 8.77 7.91 -10.98 -0.09 8.69 16 17 O -0.54 -11.10 16.50 -14.11 -0.23 -11.34 16 18 N -0.70 -13.03 5.55 -61.47 -0.34 -13.37 16 19 C 0.22 5.17 4.50 -5.19 -0.02 5.14 16 20 C -0.55 -14.47 9.83 -34.44 -0.34 -14.81 16 21 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 22 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 23 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 24 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.12 1.24 6.11 -51.93 -0.32 0.93 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.40 6.50 8.32 -40.82 -0.34 6.16 16 40 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 41 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -34.81 372.40 -5.39 -40.21 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.23 Total: 1.41 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 0.04 Total: 15.78 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.56 Total: -43.75 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.71 Total: -35.28 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.81 -5.39 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845185708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.751 kcal (2) G-P(sol) polarization free energy of solvation -34.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds