Wall clock time and date at job start Tue Mar 31 2020 22:35:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86799 * 119.99763 * 2 1
4 4 H 1.48508 * 109.46746 * 179.97438 * 3 2 1
5 5 H 1.48493 * 109.47174 * 299.99699 * 3 2 1
6 6 H 1.48502 * 109.47221 * 59.99933 * 3 2 1
7 7 C 1.37879 * 119.99802 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99613 * 179.97438 * 7 2 1
9 9 C 1.50695 * 120.00099 * 0.02562 * 7 2 1
10 10 C 1.52993 * 109.47075 * 179.97438 * 9 7 2
11 11 S 1.81406 * 109.47423 * 179.97438 * 10 9 7
12 12 O 1.42105 * 110.53947 * 68.37618 * 11 10 9
13 13 O 1.42097 * 110.54001 * 291.63089 * 11 10 9
14 14 N 1.65596 * 104.45314 * 180.02562 * 11 10 9
15 15 C 1.47425 * 125.65010 * 276.29537 * 14 11 10
16 16 C 1.54907 * 104.83569 * 155.91365 * 15 14 11
17 17 C 1.55154 * 101.58025 * 37.00886 * 16 15 14
18 18 C 1.47027 * 125.65052 * 96.34269 * 14 11 10
19 19 H 1.09000 * 110.00772 * 300.50835 * 18 14 11
20 20 C 1.53003 * 109.87701 * 61.59790 * 18 14 11
21 21 H 1.09004 * 109.47191 * 293.56349 * 20 18 14
22 22 O 1.42901 * 109.46518 * 173.57188 * 20 18 14
23 23 C 1.50690 * 109.47296 * 53.57060 * 20 18 14
24 24 C 1.38239 * 120.00183 * 267.79085 * 23 20 18
25 25 C 1.38231 * 120.00425 * 179.72959 * 24 23 20
26 26 C 1.38241 * 119.99586 * 0.26783 * 25 24 23
27 27 C 1.38228 * 120.00112 * 359.96353 * 26 25 24
28 28 C 1.38234 * 120.00383 * 0.02562 * 27 26 25
29 29 H 0.97000 * 119.99415 * 0.02562 * 1 2 3
30 30 H 1.09001 * 109.46994 * 59.99760 * 9 7 2
31 31 H 1.08999 * 109.47152 * 300.00181 * 9 7 2
32 32 H 1.09001 * 109.47105 * 60.00197 * 10 9 7
33 33 H 1.08999 * 109.47580 * 300.00288 * 10 9 7
34 34 H 1.09005 * 110.36625 * 37.07300 * 15 14 11
35 35 H 1.09004 * 110.45849 * 274.80478 * 15 14 11
36 36 H 1.08997 * 111.00193 * 278.93691 * 16 15 14
37 37 H 1.09003 * 111.03884 * 155.09768 * 16 15 14
38 38 H 1.08998 * 110.72174 * 206.13239 * 17 16 15
39 39 H 1.09001 * 110.72061 * 82.86196 * 17 16 15
40 40 H 0.96703 * 113.99833 * 299.99703 * 22 20 18
41 41 H 1.08005 * 119.99608 * 359.97438 * 24 23 20
42 42 H 1.07994 * 120.00368 * 180.25470 * 25 24 23
43 43 H 1.08004 * 119.99494 * 179.97438 * 26 25 24
44 44 H 1.08002 * 119.99760 * 179.97438 * 27 26 25
45 45 H 1.07994 * 120.00449 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1941 0.0001
9 6 1.2511 -2.4991 0.0005
10 6 2.2453 -3.6620 0.0005
11 16 1.3383 -5.2331 0.0013
12 8 0.6639 -5.4201 -1.2355
13 8 0.6647 -5.4193 1.2385
14 7 2.5204 -6.3927 0.0020
15 6 3.2258 -6.9013 -1.1885
16 6 4.5728 -7.4444 -0.6495
17 6 4.1408 -8.0552 0.7097
18 6 3.0396 -7.0865 1.1897
19 1 3.4605 -6.3642 1.8893
20 6 1.9146 -7.8717 1.8669
21 1 1.1777 -7.1767 2.2696
22 8 2.4561 -8.6598 2.9288
23 6 1.2543 -8.7749 0.8574
24 6 0.1497 -8.3334 0.1531
25 6 -0.4527 -9.1598 -0.7770
26 6 0.0462 -10.4298 -0.9988
27 6 1.1478 -10.8731 -0.2911
28 6 1.7503 -10.0466 0.6388
29 1 -0.4849 0.8401 -0.0004
30 1 0.6247 -2.5570 -0.8897
31 1 0.6241 -2.5567 0.8903
32 1 2.8719 -3.6043 0.8905
33 1 2.8720 -3.6043 -0.8894
34 1 3.3997 -6.0941 -1.9001
35 1 2.6540 -7.7023 -1.6570
36 1 5.2898 -6.6363 -0.5045
37 1 4.9786 -8.2101 -1.3107
38 1 4.9760 -8.0672 1.4100
39 1 3.7381 -9.0586 0.5710
40 1 3.1203 -9.3019 2.6429
41 1 -0.2402 -7.3413 0.3267
42 1 -1.3131 -8.8134 -1.3302
43 1 -0.4247 -11.0757 -1.7252
44 1 1.5372 -11.8655 -0.4642
45 1 2.6107 -10.3930 1.1920
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000867617464.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:32
Heat of formation + Delta-G solvation = -94.379914 kcal
Electronic energy + Delta-G solvation = -28878.724591 eV
Core-core repulsion = 24988.182305 eV
Total energy + Delta-G solvation = -3890.542286 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.45391 -38.21756 -36.76791 -36.36887 -35.55657 -33.93558 -31.83389 -31.19078
-31.17622 -30.68040 -29.34786 -25.69819 -25.46008 -22.75917 -22.53551 -21.71200
-21.41958 -20.68451 -18.58082 -18.09322 -17.64637 -16.61377 -16.37972 -16.00697
-15.66325 -15.51205 -15.12512 -14.81484 -14.58609 -14.24513 -13.93751 -13.66143
-13.54186 -13.38808 -13.25569 -12.97141 -12.57145 -12.53978 -12.41242 -11.82749
-11.74320 -11.67516 -11.62398 -11.45343 -11.30860 -11.20364 -11.11901 -11.03281
-10.93976 -10.69214 -10.43745 -10.40900 -10.31398 -9.80109 -9.35147 -8.95132
-8.88231 -8.64910 -8.53470 -6.15324 -4.21097 0.64421 1.27870 1.34546
2.94611 3.23617 3.30879 3.34273 3.69656 4.14175 4.19880 4.20948
4.35075 4.43747 4.58655 4.65093 4.71974 4.81579 4.90108 5.00555
5.07567 5.19819 5.21557 5.35902 5.42811 5.45401 5.50514 5.56677
5.60807 5.63849 5.67701 5.75605 5.83234 5.93738 6.00863 6.05274
6.15089 6.37633 6.40462 6.43308 6.48512 6.58670 6.93443 7.25108
7.30893 7.43949 7.77750 8.13917 8.82370 9.43919 10.95749
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.019429 B = 0.003377 C = 0.003207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1440.830319 B = 8289.673260 C = 8729.563374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.058 3.942
3 Si 0.900 3.100
4 H -0.272 1.272
5 H -0.281 1.281
6 H -0.281 1.281
7 C -0.520 4.520
8 H 0.062 0.938
9 C 0.028 3.972
10 C -0.589 4.589
11 S 2.597 3.403
12 O -0.956 6.956
13 O -0.960 6.960
14 N -1.007 6.007
15 C 0.124 3.876
16 C -0.126 4.126
17 C -0.139 4.139
18 C 0.131 3.869
19 H 0.088 0.912
20 C 0.116 3.884
21 H 0.141 0.859
22 O -0.546 6.546
23 C -0.097 4.097
24 C -0.108 4.108
25 C -0.109 4.109
26 C -0.125 4.125
27 C -0.119 4.119
28 C -0.120 4.120
29 H 0.265 0.735
30 H 0.033 0.967
31 H 0.034 0.966
32 H 0.120 0.880
33 H 0.119 0.881
34 H 0.074 0.926
35 H 0.068 0.932
36 H 0.077 0.923
37 H 0.080 0.920
38 H 0.082 0.918
39 H 0.082 0.918
40 H 0.366 0.634
41 H 0.121 0.879
42 H 0.124 0.876
43 H 0.120 0.880
44 H 0.120 0.880
45 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.543 -21.954 -0.773 23.571
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.145 4.145
3 Si 0.727 3.273
4 H -0.196 1.196
5 H -0.207 1.207
6 H -0.207 1.207
7 C -0.560 4.560
8 H 0.080 0.920
9 C -0.011 4.011
10 C -0.722 4.722
11 S 2.697 3.303
12 O -0.946 6.946
13 O -0.951 6.951
14 N -0.844 5.844
15 C -0.002 4.002
16 C -0.165 4.165
17 C -0.178 4.178
18 C 0.024 3.976
19 H 0.106 0.894
20 C 0.055 3.945
21 H 0.159 0.841
22 O -0.351 6.351
23 C -0.098 4.098
24 C -0.127 4.127
25 C -0.127 4.127
26 C -0.143 4.143
27 C -0.137 4.137
28 C -0.138 4.138
29 H 0.075 0.925
30 H 0.051 0.949
31 H 0.052 0.948
32 H 0.138 0.862
33 H 0.137 0.863
34 H 0.093 0.907
35 H 0.086 0.914
36 H 0.096 0.904
37 H 0.098 0.902
38 H 0.101 0.899
39 H 0.101 0.899
40 H 0.214 0.786
41 H 0.138 0.862
42 H 0.142 0.858
43 H 0.138 0.862
44 H 0.138 0.862
45 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 6.964 -21.636 -0.413 22.733
hybrid contribution 1.329 1.028 -0.478 1.746
sum 8.292 -20.609 -0.891 22.232
Atomic orbital electron populations
1.69967 1.06119 1.27145 1.49554 1.25077 0.94990 0.99581 0.94845
0.86407 0.79935 0.83109 0.77820 1.19618 1.20744 1.20728 1.21027
0.93099 0.89680 1.52170 0.91972 1.18976 0.92685 0.90597 0.98860
1.30486 1.13779 1.17901 1.10079 1.05575 0.74454 0.75973 0.74283
1.93561 1.70736 1.85117 1.45228 1.93500 1.71202 1.85115 1.45283
1.58872 1.58250 1.54517 1.12785 1.21915 0.92017 0.99106 0.87136
1.22734 0.96857 1.00694 0.96232 1.22891 0.97735 0.99355 0.97797
1.21920 0.93730 0.94538 0.87434 0.89414 1.21799 0.95060 0.91373
0.86248 0.84146 1.86706 1.60257 1.53785 1.34308 1.20405 0.96199
0.95203 0.97945 1.21167 0.95367 1.00110 0.96013 1.21197 0.99952
0.93983 0.97531 1.21133 0.96988 0.96180 0.99999 1.21035 0.96493
0.99412 0.96802 1.20785 1.00106 0.93826 0.99047 0.92536 0.94905
0.94789 0.86172 0.86307 0.90711 0.91378 0.90406 0.90157 0.89909
0.89938 0.78638 0.86151 0.85800 0.86195 0.86220 0.86325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16
4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16
8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16
9 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16
10 C -0.59 -11.44 6.12 37.15 0.23 -11.21 16
11 S 2.60 46.88 4.31 -107.50 -0.46 46.41 16
12 O -0.96 -19.57 17.53 -57.54 -1.01 -20.58 16
13 O -0.96 -19.04 13.83 -57.54 -0.80 -19.84 16
14 N -1.01 -13.65 2.37 -104.41 -0.25 -13.90 16
15 C 0.12 1.38 6.97 -2.53 -0.02 1.37 16
16 C -0.13 -1.01 7.08 -24.59 -0.17 -1.19 16
17 C -0.14 -1.11 5.36 -24.90 -0.13 -1.25 16
18 C 0.13 1.52 3.07 -66.95 -0.21 1.32 16
19 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
20 C 0.12 1.52 2.92 -27.89 -0.08 1.44 16
21 H 0.14 2.28 5.87 -51.93 -0.30 1.97 16
22 O -0.55 -6.32 13.05 -35.23 -0.46 -6.78 16
23 C -0.10 -1.26 4.37 -104.63 -0.46 -1.72 16
24 C -0.11 -1.62 8.79 -39.58 -0.35 -1.97 16
25 C -0.11 -1.42 10.05 -39.58 -0.40 -1.82 16
26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16
27 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16
28 C -0.12 -1.22 7.61 -39.58 -0.30 -1.53 16
29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
30 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16
31 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16
32 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16
33 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16
34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
39 H 0.08 0.59 4.29 -51.93 -0.22 0.37 16
40 H 0.37 2.73 6.12 45.56 0.28 3.01 16
41 H 0.12 2.06 5.50 -52.48 -0.29 1.78 16
42 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16
43 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16
44 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16
45 H 0.12 0.87 5.63 -52.49 -0.30 0.57 16
LS Contribution 366.27 15.07 5.52 5.52
Total: -1.00 -34.44 366.27 -10.85 -45.28
By element:
Atomic # 1 Polarization: 11.76 SS G_CDS: -5.87 Total: 5.89 kcal
Atomic # 6 Polarization: -29.22 SS G_CDS: -3.23 Total: -32.45 kcal
Atomic # 7 Polarization: -40.08 SS G_CDS: 0.49 Total: -39.59 kcal
Atomic # 8 Polarization: -44.94 SS G_CDS: -2.26 Total: -47.20 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal
Atomic # 16 Polarization: 46.88 SS G_CDS: -0.46 Total: 46.41 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -34.44 -10.85 -45.28 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000867617464.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.096 kcal
(2) G-P(sol) polarization free energy of solvation -34.439 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.535 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds